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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112815 (31 seq.)
>W1710943841
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
896933
897019
+
Leu
CAG
[ENA]
¡û
>W1711029706
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
896933
897019
+
Leu
CAG
[ENA]
¡û
>W1711126117
LUNZ01000046
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
3135
3049
-
Leu
CAG
[ENA]
¡û
>WENV181233533
OFET01000002
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
362072
361986
-
Leu
CAG
[ENA]
¢þ
>WENV181234190
OFEU01000002
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
362072
361986
-
Leu
CAG
[ENA]
¢þ
>WENV170112280
CEGE01000799
[CEGE] microbial mat metagenome; grass silage
15869
15955
+
Leu
CAG
[ENA]
¢þ
>WENV170112599
CEGF01005582
[CEGF] microbial mat metagenome; grass silage
87
1
-
Leu
CAG
[ENA]
¢þ
>WENV170307774
CESK01006439
[CESK] marine metagenome genome assembly TARA_078_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
30817
30731
-
Leu
CAG
[ENA]
¢þ
>WENV170744292
LULX01000138
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
3135
3049
-
Leu
CAG
[ENA]
¢þ
>WENV170884780
MDTC01189497
[MDTC] marine metagenome; seawater
76
162
+
Leu
CAG
[ENA]
¢þ
>C181059183
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
1651307
1651393
+
Leu
CAG
-
¡û
>C181110230
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
164617
164703
+
Leu
CAG
-
¡û
>C181146736
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
933253
933167
-
Leu
CAG
-
¡û
>W141804771
JPIN01000007
Gammaproteobacteria
Pseudidiomarina atlantica MCCC 1A10513 [JPIN]
116322
116408
+
Leu
CAG
[ENA]
¡û
>C141011997
FO203526
Gammaproteobacteria
Vibrio nigripulchritudo SFn1 [FO203526]
2853375
2853461
+
Leu
CAG
[Ensembl]
¡û
>W1911585180
PIPS01000001
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
358452
358538
+
Leu
CAG
[ENA]
¡û
>W1911585265
PIPT01000005
Gammaproteobacteria
Pseudidiomarina aquimaris SW15 [PIPT]
243570
243484
-
Leu
CAG
[ENA]
¡û
>W1911585437
PIPX01000001
Gammaproteobacteria
Pseudidiomarina homiensis PO-M2 [PIPX]
904397
904483
+
Leu
CAG
[ENA]
¡û
>W1911585604
PIQA01000001
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
81965
81879
-
Leu
CAG
[ENA]
¡û
>W1911585852
PIQF01000001
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
375515
375429
-
Leu
CAG
[ENA]
¡û
>W1511517947
JXXT01000039
Gammaproteobacteria
Vibrio nigripulchritudo S2604 [JXXT]
246
160
-
Leu
CAG
[ENA]
¡û
>W11175635
AFWJ01000244
Gammaproteobacteria
Vibrio nigripulchritudo ATCC 27043 [AFWJ]
163
249
+
Leu
CAG
[ENA]
¡û
>C161107812
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
1835410
1835324
-
Leu
CAG
-
¡û
>W1610621731
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
135812
135898
+
Leu
CAG
[ENA]
¡û
>W1610629359
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
361980
361894
-
Leu
CAG
[ENA]
¡û
>W1610800141
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
896933
897019
+
Leu
CAG
[ENA]
¡û
>W1610877974
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
896933
897019
+
Leu
CAG
[ENA]
¡û
>W1610937050
LUNZ01000046
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
3135
3049
-
Leu
CAG
[ENA]
¡û
>W1710515737
FNCB01000002
Gammaproteobacteria
Idiomarina zobellii [FNCB]
135685
135771
+
Leu
CAG
[ENA]
¡û
>W1710752604
LHSG01000002
Gammaproteobacteria
Idiomarina zobellii [LHSG]
135812
135898
+
Leu
CAG
[ENA]
¡û
>W1710760498
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
361980
361894
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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