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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112973 (132 seq.)
>WENV180124396
OASX01010790
[OASX] human gut metagenome; faeces
1167
1253
+
Leu
GAG
[ENA]
¢þ
>W141049529
AMUJ01000359
Gammaproteobacteria
Escherichia coli 5412 [AMUJ]
27796
27710
-
Leu
GAG
[ENA]
¡û
>W08008177
ABKX01000001
Gammaproteobacteria
Escherichia albertii TW07627 [ABKX]
146947
147033
+
Leu
GAG
[ENA]
¡û
>WENV183062852
OLIF01000030
[OLIF] metagenome; faeces
88799
88885
+
Leu
GAG
[ENA]
¢þ
>WENV170637549
JFBN01329887
[JFBN] chicken gut metagenome; ceca of Broiler chicken
684
770
+
Leu
GAG
[ENA]
¢þ
>C181000591
AP014855
Gammaproteobacteria
Escherichia albertii NIAH_Bird_3 [AP014855]
3215650
3215564
-
Leu
GAG
-
¡û
>C181000676
AP014856
Gammaproteobacteria
Escherichia albertii CB9786 [AP014856]
3293607
3293521
-
Leu
GAG
-
¡û
>C181098992
CP024282
Gammaproteobacteria
Escherichia albertii 2014C-4356 [CP024282]
2039797
2039883
+
Leu
GAG
-
¡û
>C181115974
CP025317
Gammaproteobacteria
Escherichia albertii 1551-2 [CP025317]
3334171
3334085
-
Leu
GAG
-
¡û
>C181121033
CP025676
Gammaproteobacteria
Escherichia albertii ChinaSP140150 [CP025676]
561818
561904
+
Leu
GAG
-
¡û
>C181192643
CP030778
Gammaproteobacteria
Escherichia albertii 05-3106 [CP030778]
3438501
3438587
+
Leu
GAG
-
¡û
>C181192765
CP030781
Gammaproteobacteria
Escherichia albertii 07-3866 [CP030781]
3289464
3289378
-
Leu
GAG
-
¡û
>C181192856
CP030783
Gammaproteobacteria
Escherichia albertii 2012EL-1823B [CP030783]
3578313
3578227
-
Leu
GAG
-
¡û
>C181192957
CP030787
Gammaproteobacteria
Escherichia albertii 2013C-4143 [CP030787]
4032553
4032467
-
Leu
GAG
-
¡û
>C191120620
CP034162
Gammaproteobacteria
Escherichia albertii 06-3542 [CP034162]
4142200
4142286
+
Leu
GAG
-
¡û
>C191120746
CP034166
Gammaproteobacteria
Escherichia albertii 2014C-4015 [CP034166]
1931152
1931066
-
Leu
GAG
-
¡û
>C191121563
CP034212
Gammaproteobacteria
Escherichia albertii 2010C-3449 [CP034212]
3137660
3137746
+
Leu
GAG
-
¡û
>C191121664
CP034213
Gammaproteobacteria
Escherichia albertii NCTC 9362 [CP034213]
3557441
3557527
+
Leu
GAG
-
¡û
>W1910075403
BFJS01000009
Gammaproteobacteria
Escherichia coli HH-NP005 [BFJS]
84879
84965
+
Leu
GAG
[ENA]
¡û
>W1910099473
BFWO01000099
Gammaproteobacteria
Escherichia coli KK-NP023 [BFWO]
54610
54524
-
Leu
GAG
[ENA]
¡û
>W1910109655
BGBN01000045
Gammaproteobacteria
Escherichia coli KS-P076 [BGBN]
214418
214332
-
Leu
GAG
[ENA]
¡û
>W1910123878
BGIP01000070
Gammaproteobacteria
Escherichia coli SI-P038 [BGIP]
375292
375206
-
Leu
GAG
[ENA]
¡û
>W1910175823
BJCT01000012
Gammaproteobacteria
Escherichia albertii ZAH-1-3 [BJCT]
32454
32368
-
Leu
GAG
[ENA]
¡û
>W1910175907
BJCU01000004
Gammaproteobacteria
Escherichia albertii ZAI-5-1 [BJCU]
302534
302448
-
Leu
GAG
[ENA]
¡û
>W1910175958
BJCV01000004
Gammaproteobacteria
Escherichia albertii ZAI-52-1 [BJCV]
119443
119357
-
Leu
GAG
[ENA]
¡û
>W1910176027
BJCW01000001
Gammaproteobacteria
Escherichia albertii U350-1 [BJCW]
409384
409298
-
Leu
GAG
[ENA]
¡û
>W1910176115
BJCX01000004
Gammaproteobacteria
Escherichia albertii AZK-6-2 [BJCX]
119401
119315
-
Leu
GAG
[ENA]
¡û
>W1910176208
BJCY01000008
Gammaproteobacteria
Escherichia albertii AZN-8-1 [BJCY]
81677
81591
-
Leu
GAG
[ENA]
¡û
>W1910176288
BJCZ01000005
Gammaproteobacteria
Escherichia albertii Cyou_D3 [BJCZ]
128743
128657
-
Leu
GAG
[ENA]
¡û
>W1910176349
BJDA01000005
Gammaproteobacteria
Escherichia albertii Gyo_GY2 [BJDA]
118829
118743
-
Leu
GAG
[ENA]
¡û
>W1910176460
BJDB01000026
Gammaproteobacteria
Escherichia albertii Gifu_53 [BJDB]
369
283
-
Leu
GAG
[ENA]
¡û
>W1910176504
BJDC01000020
Gammaproteobacteria
Escherichia albertii Mkr3964 [BJDC]
30777
30691
-
Leu
GAG
[ENA]
¡û
>W1910176594
BJDD01000016
Gammaproteobacteria
Escherichia albertii Mkr3965 [BJDD]
32454
32368
-
Leu
GAG
[ENA]
¡û
>W1910176663
BJDE01000003
Gammaproteobacteria
Escherichia albertii Esc18014 [BJDE]
94596
94682
+
Leu
GAG
[ENA]
¡û
>C141011608
CP007025
Gammaproteobacteria
Escherichia albertii KF1 [CP007025]
2911129
2911215
+
Leu
GAG
[Ensembl]
¡û
>W1910534076
FZFM01000004
Gammaproteobacteria
Escherichia coli [FZFM]
105222
105136
-
Leu
GAG
[ENA]
¡û
>W1910537046
FZGW01000002
Gammaproteobacteria
Escherichia coli [FZGW]
53022
52936
-
Leu
GAG
[ENA]
¡û
>W1910542791
FZJO01000012
Gammaproteobacteria
Escherichia coli [FZJO]
94084
94170
+
Leu
GAG
[ENA]
¡û
>W1910543535
FZJX01000013
Gammaproteobacteria
Escherichia coli [FZJX]
94101
94187
+
Leu
GAG
[ENA]
¡û
>W1910543782
FZKA01000012
Gammaproteobacteria
Escherichia coli [FZKA]
94101
94187
+
Leu
GAG
[ENA]
¡û
>W1910961781
NJVH01000032
Gammaproteobacteria
Escherichia coli MOD1-EC1580 [NJVH]
46474
46560
+
Leu
GAG
[ENA]
¡û
>W1910967799
NJYI01000005
Gammaproteobacteria
Escherichia coli MOD1-EC1934 [NJYI]
94055
94141
+
Leu
GAG
[ENA]
¡û
>W1911007460
NLHN01000002
Gammaproteobacteria
Escherichia coli MOD1-EC5698 [NLHN]
669647
669561
-
Leu
GAG
[ENA]
¡û
>W1911007581
NLHO01000007
Gammaproteobacteria
Escherichia coli MOD1-EC5697 [NLHO]
90169
90083
-
Leu
GAG
[ENA]
¡û
>W1911007712
NLHQ01000080
Gammaproteobacteria
Escherichia coli MOD1-EC5695 [NLHQ]
51160
51074
-
Leu
GAG
[ENA]
¡û
>W1911009553
NLIO01000012
Gammaproteobacteria
Escherichia coli MOD1-EC5671 [NLIO]
72967
73053
+
Leu
GAG
[ENA]
¡û
>W1911009624
NLIP01000013
Gammaproteobacteria
Escherichia coli MOD1-EC5670 [NLIP]
72967
73053
+
Leu
GAG
[ENA]
¡û
>W1911018782
NLNJ01000014
Gammaproteobacteria
Escherichia coli MOD1-EC5507 [NLNJ]
94091
94177
+
Leu
GAG
[ENA]
¡û
>W1911028221
NLTC01000019
Gammaproteobacteria
Escherichia coli MOD1-EC5085 [NLTC]
3925
3839
-
Leu
GAG
[ENA]
¡û
>W1911032163
NLVG01000001
Gammaproteobacteria
Escherichia coli MOD1-EC6540 [NLVG]
94146
94232
+
Leu
GAG
[ENA]
¡û
>W1911089145
NNUQ01000008
Gammaproteobacteria
Escherichia coli MOD1-EC6627 [NNUQ]
72886
72972
+
Leu
GAG
[ENA]
¡û
>W1911092533
NNWL01000002
Gammaproteobacteria
Escherichia coli MOD1-EC6413 [NNWL]
520394
520308
-
Leu
GAG
[ENA]
¡û
>W1911112761
NOHK01000008
Gammaproteobacteria
Escherichia coli MOD1-EC5068 [NOHK]
93698
93784
+
Leu
GAG
[ENA]
¡û
>W1911275389
NTDZ01000042
Gammaproteobacteria
Escherichia coli KCJK3945 [NTDZ]
394688
394602
-
Leu
GAG
[ENA]
¡û
>W1810056998
PDHK01000004
Gammaproteobacteria
Escherichia albertii 403_13 [PDHK]
279686
279600
-
Leu
GAG
[ENA]
¡û
>W1810296843
PTLP01000002
Gammaproteobacteria
Escherichia albertii MBT-EA1 [PTLP]
88510
88596
+
Leu
GAG
[ENA]
¡û
>W1810307125
PTRR01000001
Gammaproteobacteria
Escherichia albertii MOD1-EC1724 [PTRR]
88864
88950
+
Leu
GAG
[ENA]
¡û
>W1810307212
PTRS01000004
Gammaproteobacteria
Escherichia albertii MOD1-EC1723 [PTRS]
91216
91302
+
Leu
GAG
[ENA]
¡û
>W1810307279
PTRT01000001
Gammaproteobacteria
Escherichia albertii MOD1-EC1698 [PTRT]
87196
87282
+
Leu
GAG
[ENA]
¡û
>W1810308447
PTSJ01000005
Gammaproteobacteria
Escherichia albertii MOD1-EC6145 [PTSJ]
277819
277733
-
Leu
GAG
[ENA]
¡û
>W1810308942
PTSQ01000001
Gammaproteobacteria
Escherichia albertii MOD1-EC5952 [PTSQ]
649563
649477
-
Leu
GAG
[ENA]
¡û
>W1810309313
PTSV01000001
Gammaproteobacteria
Escherichia albertii MOD1-EC5802 [PTSV]
553234
553148
-
Leu
GAG
[ENA]
¡û
>W1810309874
PTTD01000004
Gammaproteobacteria
Escherichia albertii MOD1-EC5045 [PTTD]
93910
93996
+
Leu
GAG
[ENA]
¡û
>W1810309956
PTTE01000012
Gammaproteobacteria
Escherichia albertii MOD1-EC1733 [PTTE]
93963
94049
+
Leu
GAG
[ENA]
¡û
>W1810310023
PTTF01000012
Gammaproteobacteria
Escherichia albertii MOD1-EC1732 [PTTF]
93963
94049
+
Leu
GAG
[ENA]
¡û
>W1810419696
PYQT01000013
Gammaproteobacteria
Escherichia albertii 20507-2 [PYQT]
124448
124362
-
Leu
GAG
[ENA]
¡û
>W1510011801
BBMY01000001
Gammaproteobacteria
Escherichia albertii NBRC 107761 [BBMY]
54309
54223
-
Leu
GAG
[ENA]
¡û
>W1510027473
CCBU01000516
Gammaproteobacteria
Escherichia coli [CCBU]
3245
3159
-
Leu
GAG
[ENA]
¡û
>W1510079942
CDRK01000489
Gammaproteobacteria
Escherichia coli 80B_L1 [CDRK]
1555
1641
+
Leu
GAG
[ENA]
¡û
>W1510728277
CYAL01000003
Gammaproteobacteria
Escherichia coli 402248_aEPEC [CYAL]
109730
109644
-
Leu
GAG
[ENA]
¡û
>W1510730608
CYBM01000002
Gammaproteobacteria
Escherichia coli 400654_aEPEC [CYBM]
94203
94289
+
Leu
GAG
[ENA]
¡û
>W1510732625
CYCK01000005
Gammaproteobacteria
Escherichia coli 102606_aEPEC [CYCK]
110574
110488
-
Leu
GAG
[ENA]
¡û
>W1510732780
CYCM01000004
Gammaproteobacteria
Escherichia coli 102366_aEPEC [CYCM]
109742
109656
-
Leu
GAG
[ENA]
¡û
>W1510733455
CYCU01000007
Gammaproteobacteria
Escherichia coli 201488_aEPEC [CYCU]
96684
96598
-
Leu
GAG
[ENA]
¡û
>W1510733708
CYCX01000002
Gammaproteobacteria
Escherichia coli 201589_aEPEC [CYCX]
109729
109643
-
Leu
GAG
[ENA]
¡û
>W1510737519
CYFE01000006
Gammaproteobacteria
Escherichia coli 402794 [CYFE]
60018
60104
+
Leu
GAG
[ENA]
¡û
>W1510740690
CYGS01000002
Gammaproteobacteria
Escherichia coli 200708_aEPEC [CYGS]
109738
109652
-
Leu
GAG
[ENA]
¡û
>W11139207
AEJU01000023
Gammaproteobacteria
Escherichia albertii TW08933 [AEJU]
54600
54686
+
Leu
GAG
[ENA]
¡û
>W11139305
AEJY01000110
Gammaproteobacteria
Escherichia albertii TW15818 [AEJY]
1989
1903
-
Leu
GAG
[ENA]
¡û
>C161001744
AP014857
Gammaproteobacteria
Escherichia albertii EC06-170 [AP014857]
3305729
3305643
-
Leu
GAG
[Ensembl]
¡û
>W121126273
BAGV01000052
Gammaproteobacteria
Enterobacteriaceae bacterium B14 [BAGV]
132748
132834
+
Leu
GAG
[ENA]
¡û
>W1610054848
BBVE01000010
Gammaproteobacteria
Escherichia albertii [BBVE]
94138
94224
+
Leu
GAG
[ENA]
¡û
>W1610054908
BBVF01000008
Gammaproteobacteria
Escherichia albertii [BBVF]
111828
111742
-
Leu
GAG
[ENA]
¡û
>W1610054985
BBVG01000008
Gammaproteobacteria
Escherichia albertii [BBVG]
121782
121696
-
Leu
GAG
[ENA]
¡û
>W1610055031
BBVH01000004
Gammaproteobacteria
Escherichia albertii [BBVH]
93278
93364
+
Leu
GAG
[ENA]
¡û
>W1610055083
BBVI01000009
Gammaproteobacteria
Escherichia albertii [BBVI]
93895
93981
+
Leu
GAG
[ENA]
¡û
>W1610055148
BBVJ01000010
Gammaproteobacteria
Escherichia albertii [BBVJ]
93231
93317
+
Leu
GAG
[ENA]
¡û
>W1610055185
BBVK01000001
Gammaproteobacteria
Escherichia albertii [BBVK]
404810
404724
-
Leu
GAG
[ENA]
¡û
>W1610055253
BBVL01000002
Gammaproteobacteria
Escherichia albertii [BBVL]
247761
247675
-
Leu
GAG
[ENA]
¡û
>W1610055321
BBVM01000003
Gammaproteobacteria
Escherichia albertii [BBVM]
266514
266428
-
Leu
GAG
[ENA]
¡û
>W1610055371
BBVN01000004
Gammaproteobacteria
Escherichia albertii [BBVN]
124582
124496
-
Leu
GAG
[ENA]
¡û
>W1610055405
BBVO01000001
Gammaproteobacteria
Escherichia albertii [BBVO]
88049
88135
+
Leu
GAG
[ENA]
¡û
>W1610055490
BBVP01000006
Gammaproteobacteria
Escherichia albertii [BBVP]
88378
88464
+
Leu
GAG
[ENA]
¡û
>W1610055557
BBVQ01000005
Gammaproteobacteria
Escherichia albertii [BBVQ]
64330
64244
-
Leu
GAG
[ENA]
¡û
>W1610055617
BBVR01000002
Gammaproteobacteria
Escherichia albertii [BBVR]
111747
111661
-
Leu
GAG
[ENA]
¡û
>W1610055686
BBVS01000004
Gammaproteobacteria
Escherichia albertii [BBVS]
122941
122855
-
Leu
GAG
[ENA]
¡û
>W1610055764
BBVT01000010
Gammaproteobacteria
Escherichia albertii [BBVT]
54626
54712
+
Leu
GAG
[ENA]
¡û
>W1610055803
BBVU01000004
Gammaproteobacteria
Escherichia albertii [BBVU]
93499
93585
+
Leu
GAG
[ENA]
¡û
>W1610055846
BBVV01000003
Gammaproteobacteria
Escherichia albertii [BBVV]
266699
266613
-
Leu
GAG
[ENA]
¡û
>W1610055924
BBVW01000007
Gammaproteobacteria
Escherichia albertii [BBVW]
119718
119632
-
Leu
GAG
[ENA]
¡û
>W1610055963
BBVX01000001
Gammaproteobacteria
Escherichia albertii [BBVX]
514872
514786
-
Leu
GAG
[ENA]
¡û
>W1610056048
BBVY01000011
Gammaproteobacteria
Escherichia albertii [BBVY]
118577
118491
-
Leu
GAG
[ENA]
¡û
>W1610056109
BBVZ01000004
Gammaproteobacteria
Escherichia albertii [BBVZ]
277595
277509
-
Leu
GAG
[ENA]
¡û
>W1610056254
BBWB01000003
Gammaproteobacteria
Escherichia albertii [BBWB]
122960
122874
-
Leu
GAG
[ENA]
¡û
>W1610056332
BBWC01000004
Gammaproteobacteria
Escherichia albertii [BBWC]
88445
88531
+
Leu
GAG
[ENA]
¡û
>W1610056408
BBWD01000007
Gammaproteobacteria
Escherichia albertii [BBWD]
120260
120174
-
Leu
GAG
[ENA]
¡û
>W1710002353
ADJH01000010
Gammaproteobacteria
Escherichia albertii B156 [ADJH]
665086
665000
-
Leu
GAG
[ENA]
¡û
>W1710051547
BBVE01000010
Gammaproteobacteria
Escherichia albertii [BBVE]
94138
94224
+
Leu
GAG
[ENA]
¡û
>W1710051607
BBVF01000008
Gammaproteobacteria
Escherichia albertii [BBVF]
111828
111742
-
Leu
GAG
[ENA]
¡û
>W1710051684
BBVG01000008
Gammaproteobacteria
Escherichia albertii [BBVG]
121782
121696
-
Leu
GAG
[ENA]
¡û
>W1710051730
BBVH01000004
Gammaproteobacteria
Escherichia albertii [BBVH]
93278
93364
+
Leu
GAG
[ENA]
¡û
>W1710051782
BBVI01000009
Gammaproteobacteria
Escherichia albertii [BBVI]
93895
93981
+
Leu
GAG
[ENA]
¡û
>W1710051847
BBVJ01000010
Gammaproteobacteria
Escherichia albertii [BBVJ]
93231
93317
+
Leu
GAG
[ENA]
¡û
>W1710051884
BBVK01000001
Gammaproteobacteria
Escherichia albertii [BBVK]
404810
404724
-
Leu
GAG
[ENA]
¡û
>W1710051952
BBVL01000002
Gammaproteobacteria
Escherichia albertii [BBVL]
247761
247675
-
Leu
GAG
[ENA]
¡û
>W1710052020
BBVM01000003
Gammaproteobacteria
Escherichia albertii [BBVM]
266514
266428
-
Leu
GAG
[ENA]
¡û
>W1710052070
BBVN01000004
Gammaproteobacteria
Escherichia albertii [BBVN]
124582
124496
-
Leu
GAG
[ENA]
¡û
>W1710052104
BBVO01000001
Gammaproteobacteria
Escherichia albertii [BBVO]
88049
88135
+
Leu
GAG
[ENA]
¡û
>W1710052189
BBVP01000006
Gammaproteobacteria
Escherichia albertii [BBVP]
88378
88464
+
Leu
GAG
[ENA]
¡û
>W1710052256
BBVQ01000005
Gammaproteobacteria
Escherichia albertii [BBVQ]
64330
64244
-
Leu
GAG
[ENA]
¡û
>W1710052316
BBVR01000002
Gammaproteobacteria
Escherichia albertii [BBVR]
111747
111661
-
Leu
GAG
[ENA]
¡û
>W1710052385
BBVS01000004
Gammaproteobacteria
Escherichia albertii [BBVS]
122941
122855
-
Leu
GAG
[ENA]
¡û
>W1710052463
BBVT01000010
Gammaproteobacteria
Escherichia albertii [BBVT]
54626
54712
+
Leu
GAG
[ENA]
¡û
>W1710052502
BBVU01000004
Gammaproteobacteria
Escherichia albertii [BBVU]
93499
93585
+
Leu
GAG
[ENA]
¡û
>W1710052545
BBVV01000003
Gammaproteobacteria
Escherichia albertii [BBVV]
266699
266613
-
Leu
GAG
[ENA]
¡û
>W1710052623
BBVW01000007
Gammaproteobacteria
Escherichia albertii [BBVW]
119718
119632
-
Leu
GAG
[ENA]
¡û
>W1710052662
BBVX01000001
Gammaproteobacteria
Escherichia albertii [BBVX]
514872
514786
-
Leu
GAG
[ENA]
¡û
>W1710052747
BBVY01000011
Gammaproteobacteria
Escherichia albertii [BBVY]
118577
118491
-
Leu
GAG
[ENA]
¡û
>W1710052808
BBVZ01000004
Gammaproteobacteria
Escherichia albertii [BBVZ]
277595
277509
-
Leu
GAG
[ENA]
¡û
>W1710052953
BBWB01000003
Gammaproteobacteria
Escherichia albertii [BBWB]
122960
122874
-
Leu
GAG
[ENA]
¡û
>W1710053031
BBWC01000004
Gammaproteobacteria
Escherichia albertii [BBWC]
88445
88531
+
Leu
GAG
[ENA]
¡û
>W1710053107
BBWD01000007
Gammaproteobacteria
Escherichia albertii [BBWD]
120260
120174
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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