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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113111 (25 seq.)
>W1711009053
LQQL01000376
Bacillota
Weissella sp. DD23 [LQQL]
4486
4571
+
Leu
AAG
[ENA]
¡û
>W1711168465
LVYB01000007
Bacillota
Weissella cibaria [LVYB]
101623
101538
-
Leu
AAG
[ENA]
¡û
>W1711999927
NDXJ01000020
Bacillota
Weissella cibaria [NDXJ]
9693
9778
+
Leu
AAG
[ENA]
¡û
>C171026234
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
2327148
2327063
-
Leu
AAG
-
¡û
>C171029836
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
1866502
1866417
-
Leu
AAG
-
¡û
>C171029922
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
1876984
1876899
-
Leu
AAG
-
¡û
>WENV170002171
AGFT01135075
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
116
30
-
Leu
AAG
[ENA]
¢þ
>C181047640
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
500353
500438
+
Leu
AAG
-
¡û
>C181069757
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
2205484
2205569
+
Leu
AAG
-
¡û
>C181152898
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
1118007
1117922
-
Leu
AAG
-
¡û
>C191137852
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
494454
494539
+
Leu
AAG
-
¡û
>C191188458
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
1964805
1964890
+
Leu
AAG
-
¡û
>W1910178104
BJEF01000007
Bacillota
Weissella cibaria JCM 12495 [BJEF]
9593
9678
+
Leu
AAG
[ENA]
¡û
>W1910638434
LRRC01000014
Bacillota
Weissella cibaria 110 [LRRC]
238529
238444
-
Leu
AAG
[ENA]
¡û
>W1810828856
QSKQ01000006
Bacillota
Weissella cibaria AM27-24 [QSKQ]
9478
9563
+
Leu
AAG
[ENA]
¡û
>W1810828913
QSKR01000005
Bacillota
Weissella cibaria AM27-22LB [QSKR]
227049
226964
-
Leu
AAG
[ENA]
¡û
>W1810842400
QSVX01000020
Bacillota
Weissella cibaria OF06-4 [QSVX]
7154
7069
-
Leu
AAG
[ENA]
¡û
>WENV11102243
AGFT01135075
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
116
30
-
Leu
AAG
[ENA]
¡û
>W1511479008
JWHT01000033
Bacillota
Weissella cibaria AB3b [JWHT]
35460
35375
-
Leu
AAG
[ENA]
¡û
>W1511479075
JWHU01000026
Bacillota
Weissella cibaria MG1 [JWHU]
10554
10469
-
Leu
AAG
[ENA]
¡û
>W1511479148
JWHV01000021
Bacillota
Weissella cibaria ff3PR [JWHV]
25376
25291
-
Leu
AAG
[ENA]
¡û
>W11140018
AEKT01000047
Bacillota
Weissella cibaria KACC 11862 [AEKT]
9459
9544
+
Leu
AAG
[ENA]
¡û
>C161046788
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
2418279
2418194
-
Leu
AAG
[Ensembl]
¡û
>W1610857573
LQQL01000376
Bacillota
Weissella sp. DD23 [LQQL]
4486
4571
+
Leu
AAG
[ENA]
¡û
>W1610978317
LVYB01000007
Bacillota
Weissella cibaria [LVYB]
101623
101538
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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