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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113140 (75 seq.)
>W1711144062
LVHW01000001
Gammaproteobacteria
Pantoea agglomerans [LVHW]
1784146
1784060
-
Leu
TAA
[ENA]
¡û
>W1711223373
LXSW01000076
Gammaproteobacteria
Pantoea agglomerans pv. betae [LXSW]
1468903
1468989
+
Leu
TAA
[ENA]
¡û
>W1711223412
LXSX01000008
Gammaproteobacteria
Pantoea agglomerans pv. gypsophilae [LXSX]
233212
233298
+
Leu
TAA
[ENA]
¡û
>W1711318809
MAYS01000606
Gammaproteobacteria
Candidatus Erwinia dacicola [MAYS]
1290
1204
-
Leu
TAA
[ENA]
¡û
>W1711424789
MIEI01000056
Gammaproteobacteria
Pantoea brenneri [MIEI]
123
209
+
Leu
TAA
[ENA]
¡û
>W1711455304
MIZY01000001
Gammaproteobacteria
Pantoea brenneri conspicua [MIZY]
653069
653155
+
Leu
TAA
[ENA]
¡û
>W1711513191
MLFN01000064
Gammaproteobacteria
Pantoea conspicua [MLFN]
3711
3625
-
Leu
TAA
[ENA]
¡û
>W1711745643
MUJJ01000001
Gammaproteobacteria
Pantoea vagans [MUJJ]
968883
968797
-
Leu
TAA
[ENA]
¡û
>W1712070511
NGNU01000022
Gammaproteobacteria
Pantoea agglomerans [NGNU]
117813
117727
-
Leu
TAA
[ENA]
¡û
>C171052851
CP016889
Gammaproteobacteria
Pantoea agglomerans C410P1 [CP016889]
3040425
3040511
+
Leu
TAA
-
¡û
>W131063514
ANKX01000019
Gammaproteobacteria
Pantoea agglomerans 299R [ANKX]
145611
145525
-
Leu
TAA
[ENA]
¡û
>W131211292
ATMI01000005
Gammaproteobacteria
Tatumella saanichensis NML 06-3099 [ATMI]
10256
10170
-
Leu
TAA
[ENA]
¡û
>W131211339
ATMJ01000001
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [ATMJ]
129607
129521
-
Leu
TAA
[ENA]
¡û
>W141071708
ASJI01000025
Gammaproteobacteria
Pantoea agglomerans Tx10 [ASJI]
873293
873207
-
Leu
TAA
[ENA]
¡û
>WENV181228886
OFEI01000121
[OFEI] insect metagenome; insect
4421
4335
-
Leu
TAA
[ENA]
¢þ
>WENV181232032
OFEL01000180
[OFEL] insect metagenome; insect
4758
4672
-
Leu
TAA
[ENA]
¢þ
>W141158512
AXOF01000006
Gammaproteobacteria
Pantoea agglomerans Eh318 [AXOF]
317230
317316
+
Leu
TAA
[ENA]
¡û
>WENV170700100
LIDZ01001855
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
90
4
-
Leu
TAA
[ENA]
¢þ
>W141463992
JFJX01000012
Gammaproteobacteria
Tatumella sp. UCD-D_suzukii [JFJX]
1195
1281
+
Leu
TAA
[ENA]
¡û
>W141466708
JFOK01000008
Gammaproteobacteria
Pantoea agglomerans [JFOK]
98177
98091
-
Leu
TAA
[ENA]
¡û
>CL170100009
CP014129
Gammaproteobacteria
Pantoea vagans FDAARGOS_160 [CP014129]
1680692
1680778
+
Leu
TAA
[Ensembl]
¡û
>C181047029
CP020820
Gammaproteobacteria
Pantoea vagans FBS135 [CP020820]
2621476
2621390
-
Leu
TAA
-
¡û
>C181164416
CP028349
Gammaproteobacteria
Pantoea vagans PV989 [CP028349]
1923611
1923697
+
Leu
TAA
-
¡û
>C181217608
LS483499
Gammaproteobacteria
Tatumella ptyseos NCTC11468 [LS483499]
1297396
1297482
+
Leu
TAA
-
¡û
>C191077127
CP031649
Gammaproteobacteria
Pantoea agglomerans TH81 [CP031649]
2716956
2716870
-
Leu
TAA
-
¡û
>C191120267
CP034148
Gammaproteobacteria
Pantoea agglomerans L15 [CP034148]
1455374
1455460
+
Leu
TAA
-
¡û
>C191126194
CP034469
Gammaproteobacteria
Pantoea agglomerans CFSAN047153 [CP034469]
1466568
1466654
+
Leu
TAA
-
¡û
>C191126265
CP034474
Gammaproteobacteria
Pantoea agglomerans CFSAN047154 [CP034474]
1239360
1239446
+
Leu
TAA
-
¡û
>C191162339
CP038853
Gammaproteobacteria
Pantoea vagans LMG 24199 [CP038853]
2616377
2616291
-
Leu
TAA
-
¡û
>W141710941
JMPR01000038
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [JMPR]
220747
220661
-
Leu
TAA
[ENA]
¡û
>W141712633
JMRT01000038
Gammaproteobacteria
Pantoea sp. 3.5.1 [JMRT]
2467
2381
-
Leu
TAA
[ENA]
¡û
>W141728269
JNGC01000001
Gammaproteobacteria
Pantoea agglomerans [JNGC]
1197243
1197329
+
Leu
TAA
[ENA]
¡û
>W141753863
JNVA01000056
Gammaproteobacteria
Pantoea agglomerans [JNVA]
11461
11375
-
Leu
TAA
[ENA]
¡û
>W141807685
JPOT01000001
Gammaproteobacteria
Pantoea agglomerans [JPOT]
1594880
1594794
-
Leu
TAA
[ENA]
¡û
>W141821432
JQNO01000001
Gammaproteobacteria
Pantoea sp. 9140 [JQNO]
1167760
1167846
+
Leu
TAA
[ENA]
¡û
>W1910502042
FYAZ01000010
Gammaproteobacteria
Pantoea agglomerans [FYAZ]
140145
140231
+
Leu
TAA
[ENA]
¡û
>W1910617942
LJAM02000064
Gammaproteobacteria
Candidatus Erwinia dacicola dacicola Oroville [LJAM]
4294
4380
+
Leu
TAA
[ENA]
¡û
>W1910910478
NHAS01000006
Gammaproteobacteria
Pantoea agglomerans JM1 [NHAS]
242571
242485
-
Leu
TAA
[ENA]
¡û
>W1910910582
NHBE01000001
Gammaproteobacteria
Pantoea sp. AV62 [NHBE]
166204
166118
-
Leu
TAA
[ENA]
¡û
>W1911219279
NRSO01000001
Gammaproteobacteria
Pantoea vagans TYU1 [NRSO]
3335753
3335667
-
Leu
TAA
[ENA]
¡û
>W1911573806
PDEG01000003
Gammaproteobacteria
Pantoea agglomerans FDAARGOS_407 [PDEG]
927545
927459
-
Leu
TAA
[ENA]
¡û
>W1911573811
PDEG01000004
Gammaproteobacteria
Pantoea agglomerans FDAARGOS_407 [PDEG]
8582
8496
-
Leu
TAA
[ENA]
¡û
>W1911671095
QFZW01000002
Gammaproteobacteria
Pantoea agglomerans CFBP13505 [QFZW]
391903
391989
+
Leu
TAA
[ENA]
¡û
>W1911671766
QGAH01000022
Gammaproteobacteria
Pantoea agglomerans CFBP13516 [QGAH]
92342
92256
-
Leu
TAA
[ENA]
¡û
>W1911672060
QGAM01000009
Gammaproteobacteria
Pantoea agglomerans CFBP13532 [QGAM]
166338
166252
-
Leu
TAA
[ENA]
¡û
>W1810325567
PUEK01000002
Gammaproteobacteria
Pantoea ananatis MHSD5 [PUEK]
171088
171002
-
Leu
TAA
[ENA]
¡û
>W1810597325
QGHE01000008
Gammaproteobacteria
Pantoea agglomerans PNG 92-11 [QGHE]
204743
204829
+
Leu
TAA
[ENA]
¡û
>W1810629139
QICZ01000001
Gammaproteobacteria
Pantoea sp. JKS000250 [QICZ]
3698719
3698805
+
Leu
TAA
[ENA]
¡û
>W1810686169
QLAA01000001
Gammaproteobacteria
Pantoea agglomerans Bl3 [QLAA]
603539
603625
+
Leu
TAA
[ENA]
¡û
>W1810783637
QQXH01000033
Gammaproteobacteria
Pantoea agglomerans BD 1212 [QQXH]
198
284
+
Leu
TAA
[ENA]
¡û
>W1810783680
QQXI01000152
Gammaproteobacteria
Pantoea agglomerans BD 1274 [QQXI]
8916
8830
-
Leu
TAA
[ENA]
¡û
>W1510093078
CEFP01000006
Gammaproteobacteria
Pantoea vagans PaVv11 [CEFP]
1613199
1613113
-
Leu
TAA
[ENA]
¡û
>W1510093546
CEGN01000022
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
36992
36906
-
Leu
TAA
[ENA]
¡û
>W1510100345
CEMW01000022
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
36992
36906
-
Leu
TAA
[ENA]
¡û
>W10126830
AEDL01000006
Gammaproteobacteria
Pantoea sp. aB [AEDL]
166713
166799
+
Leu
TAA
[ENA]
¡û
>W1511304394
JPKP01000002
Gammaproteobacteria
Pantoea vagans MP7 [JPKP]
140113
140199
+
Leu
TAA
[ENA]
¡û
>W1511304452
JPKQ01000002
Gammaproteobacteria
Pantoea agglomerans MP2 [JPKQ]
271474
271560
+
Leu
TAA
[ENA]
¡û
>C11118237
CP002206
Gammaproteobacteria
Pantoea vagans C9-1 [CP002206]
862043
862129
+
Leu
TAA
[Ensembl]
¡û
>W1511387485
JSUT01000012
Gammaproteobacteria
Pantoea sp. MBLJ3 [JSUT]
173035
173121
+
Leu
TAA
[ENA]
¡û
>W11126911
ADWZ01000001
Gammaproteobacteria
Pantoea agglomerans SL1_M5 [ADWZ]
828997
828911
-
Leu
TAA
[ENA]
¡û
>W1511483292
JWLQ01000009
Gammaproteobacteria
Pantoea agglomerans LMAE-2 [JWLQ]
66708
66622
-
Leu
TAA
[ENA]
¡û
>W11134091
AEDL01000006
Gammaproteobacteria
Pantoea sp. aB [AEDL]
166713
166799
+
Leu
TAA
[ENA]
¡û
>W1511526666
JYGW01000016
Gammaproteobacteria
Pantoea agglomerans GB1 [JYGW]
73190
73104
-
Leu
TAA
[ENA]
¡û
>W1511685972
LFQL01000030
Gammaproteobacteria
Pantoea vagans ZBG6 [LFQL]
28438
28352
-
Leu
TAA
[ENA]
¡û
>W121123729
BAEF01000001
Gammaproteobacteria
Pantoea agglomerans IG1 [BAEF]
283942
284028
+
Leu
TAA
[ENA]
¡û
>W1610076769
BCZA01000001
Gammaproteobacteria
Pantoea agglomerans NBRC 102470 [BCZA]
140059
140145
+
Leu
TAA
[ENA]
¡û
>W1610460965
FKKH01000001
Gammaproteobacteria
Pantoea sp. 9133 [FKKH]
3801791
3801705
-
Leu
TAA
[ENA]
¡û
>W1610631626
LIME01000004
Gammaproteobacteria
Pantoea agglomerans [LIME]
238798
238884
+
Leu
TAA
[ENA]
¡û
>W1610955070
LVHW01000001
Gammaproteobacteria
Pantoea agglomerans [LVHW]
1784146
1784060
-
Leu
TAA
[ENA]
¡û
>W1611007744
LXSW01000076
Gammaproteobacteria
Pantoea agglomerans pv. betae [LXSW]
1468903
1468989
+
Leu
TAA
[ENA]
¡û
>W1611007783
LXSX01000008
Gammaproteobacteria
Pantoea agglomerans pv. gypsophilae [LXSX]
233212
233298
+
Leu
TAA
[ENA]
¡û
>W1710074458
BCZA01000001
Gammaproteobacteria
Pantoea agglomerans NBRC 102470 [BCZA]
140059
140145
+
Leu
TAA
[ENA]
¡û
>W1710570583
FOVG01000001
Gammaproteobacteria
Pantoea varia OV426 [FOVG]
1704983
1704897
-
Leu
TAA
[ENA]
¡û
>W1710600290
FUWI01000001
Gammaproteobacteria
Pantoea eucalypti agglomerans [FUWI]
618914
619000
+
Leu
TAA
[ENA]
¡û
>W1710764441
LIME01000004
Gammaproteobacteria
Pantoea agglomerans [LIME]
238798
238884
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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