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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113225 (128 seq.)
>W131057831
ANEW01000035
Bacillota
Streptococcus agalactiae LDS 610 [ANEW]
2222
2139
-
Leu
TAG
[ENA]
¡û
>W131067743
ANQI01000014
Bacillota
Streptococcus agalactiae MRI Z1-204 [ANQI]
26156
26073
-
Leu
TAG
[ENA]
¡û
>W131213299
ATOX01000031
Bacillota
Streptococcus agalactiae MC623 [ATOX]
190
273
+
Leu
TAG
[ENA]
¡û
>C024469
CP000024
Bacillota
Streptococcus thermophilus CNRZ1066 [CP000024]
22985
23066
+
Leu
TAG
[Ensembl]
¡û
>C024500
CP000024
Bacillota
Streptococcus thermophilus CNRZ1066 [CP000024]
134241
134322
+
Leu
TAG
[Ensembl]
¡û
>C024512
CP000024
Bacillota
Streptococcus thermophilus CNRZ1066 [CP000024]
357323
357404
+
Leu
TAG
[Ensembl]
¡û
>WENV180120497
OASO01000365
[OASO] human gut metagenome; faeces
172
89
-
Leu
TAG
[ENA]
¢þ
>WENV180185692
OAWU01000047
[OAWU] human gut metagenome; faeces
91274
91191
-
Leu
TAG
[ENA]
¢þ
>WENV180191197
OAXB01005383
[OAXB] human gut metagenome; faeces
697
614
-
Leu
TAG
[ENA]
¢þ
>WENV180200472
OBAE01063471
[OBAE] human gut metagenome; human gut
118
201
+
Leu
TAG
[ENA]
¢þ
>WENV180233234
OBCP01000231
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
73023
72940
-
Leu
TAG
[ENA]
¢þ
>WENV180233579
OBCP01001304
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
172
89
-
Leu
TAG
[ENA]
¢þ
>WENV180314734
OBKG01035566
[OBKG] human gut metagenome; human gut
305
388
+
Leu
TAG
[ENA]
¢þ
>WENV180411385
OBUY01019939
[OBUY] human gut metagenome; faeces
176
259
+
Leu
TAG
[ENA]
¢þ
>W141040397
ALYW01000058
Bacillota
Streptococcus mutans B102SM-B [ALYW]
66972
66889
-
Leu
TAG
[ENA]
¡û
>W141040415
ALYW01000071
Bacillota
Streptococcus mutans B102SM-B [ALYW]
5557
5640
+
Leu
TAG
[ENA]
¡û
>WENV180424670
OBVX01007080
[OBVX] human gut metagenome; faeces
825
742
-
Leu
TAG
[ENA]
¢þ
>W141040744
ALZC01000071
Bacillota
Streptococcus mutans B88SM-A [ALZC]
5442
5525
+
Leu
TAG
[ENA]
¡û
>W141040751
ALZC01000072
Bacillota
Streptococcus mutans B88SM-A [ALZC]
5442
5525
+
Leu
TAG
[ENA]
¡û
>W141040761
ALZC01000073
Bacillota
Streptococcus mutans B88SM-A [ALZC]
5442
5525
+
Leu
TAG
[ENA]
¡û
>WENV180620306
OCQB01055284
[OCQB] human gut metagenome; human gut
566
483
-
Leu
TAG
[ENA]
¢þ
>WENV180647201
OCSH01044690
[OCSH] human gut metagenome; human gut
566
483
-
Leu
TAG
[ENA]
¢þ
>WENV180761815
ODHZ01029386
[ODHZ] human metagenome; G_DNA_Stool
645
562
-
Leu
TAG
[ENA]
¢þ
>WENV180891112
ODMO01054967
[ODMO] human metagenome; G_DNA_Tongue dorsum
249
332
+
Leu
TAG
[ENA]
¢þ
>WENV180978362
ODUZ01060669
[ODUZ] human metagenome; G_DNA_Tongue dorsum
169
86
-
Leu
TAG
[ENA]
¢þ
>WENV181217173
OFCH01001967
[OFCH] metagenome; Human gut stool
2329
2246
-
Leu
TAG
[ENA]
¢þ
>WENV181345087
OFMK01023065
[OFMK] human gut metagenome; human gut
328
245
-
Leu
TAG
[ENA]
¢þ
>WENV181443979
OGDQ01002927
[OGDQ] metagenome; Human gut stool
6043
5960
-
Leu
TAG
[ENA]
¢þ
>WENV181506527
OGGM01009934
[OGGM] metagenome; Human gut stool
225
308
+
Leu
TAG
[ENA]
¢þ
>WENV181506620
OGGN01000217
[OGGN] metagenome; Human gut stool
755
838
+
Leu
TAG
[ENA]
¢þ
>WENV181576529
OGJV01015094
[OGJV] metagenome; Human gut stool
225
308
+
Leu
TAG
[ENA]
¢þ
>WENV181618877
OGMC01024194
[OGMC] metagenome; Human gut stool
241
324
+
Leu
TAG
[ENA]
¢þ
>WENV181698384
OGPE01041214
[OGPE] human gut metagenome; faeces
225
308
+
Leu
TAG
[ENA]
¢þ
>WENV181711257
OGPO01026071
[OGPO] human gut metagenome; faeces
305
388
+
Leu
TAG
[ENA]
¢þ
>WENV181778252
OGRH01026033
[OGRH] human gut metagenome; faeces
566
483
-
Leu
TAG
[ENA]
¢þ
>WENV181818692
OGTT01002783
[OGTT] human gut metagenome; fecal sample 6 from infant 8
1176
1093
-
Leu
TAG
[ENA]
¢þ
>WENV181865333
OGWU01020693
[OGWU] human gut metagenome; faeces
1010
927
-
Leu
TAG
[ENA]
¢þ
>WENV181942972
OGYZ01002425
[OGYZ] human gut metagenome; faeces
735
652
-
Leu
TAG
[ENA]
¢þ
>WENV181967118
OGZV01001957
[OGZV] human gut metagenome; faeces
241
324
+
Leu
TAG
[ENA]
¢þ
>WENV182046898
OHDW01001680
[OHDW] human gut metagenome; feces
1632
1549
-
Leu
TAG
[ENA]
¢þ
>W141204812
AZJS01000013
Bacillota
Streptococcus thermophilus MTH17CL396 [AZJS]
811
894
+
Leu
TAG
[ENA]
¡û
>W141204820
AZJS01000013
Bacillota
Streptococcus thermophilus MTH17CL396 [AZJS]
1552
1635
+
Leu
TAG
[ENA]
¡û
>W141214939
AZTL01000002
Bacillota
Streptococcus thermophilus TH982 [AZTL]
205
288
+
Leu
TAG
[ENA]
¡û
>W141230124
BAST01000021
Bacillota
Streptococcus anginosus SK52 = DSM 20563 [BAST]
433
352
-
Leu
TAG
[ENA]
¡û
>W141230265
BASW01000038
Bacillota
Streptococcus anginosus 1505 [BASW]
433
352
-
Leu
TAG
[ENA]
¡û
>WENV182349131
OIBA01011643
[OIBA] human gut metagenome; feces
305
388
+
Leu
TAG
[ENA]
¢þ
>WENV182430365
OIIE01028459
[OIIE] human gut metagenome; human gut
229
312
+
Leu
TAG
[ENA]
¢þ
>WENV182468842
OIPA01000613
[OIPA] human gut metagenome; human gut
613
530
-
Leu
TAG
[ENA]
¢þ
>WENV182482357
OIRE01001108
[OIRE] human gut metagenome; human gut
422
339
-
Leu
TAG
[ENA]
¢þ
>WENV182483508
OIRI01004416
[OIRI] human gut metagenome; human gut
1170
1253
+
Leu
TAG
[ENA]
¢þ
>WENV182487758
OIRX01002449
[OIRX] human gut metagenome; human gut
1704
1621
-
Leu
TAG
[ENA]
¢þ
>WENV182489437
OISC01009058
[OISC] human gut metagenome; human gut
910
827
-
Leu
TAG
[ENA]
¢þ
>WENV182491509
OISK01005580
[OISK] human gut metagenome; human gut
777
860
+
Leu
TAG
[ENA]
¢þ
>WENV182506465
OIVA01009659
[OIVA] human gut metagenome; human gut
304
387
+
Leu
TAG
[ENA]
¢þ
>WENV182534946
OIXG01003810
[OIXG] human gut metagenome; faeces
225
308
+
Leu
TAG
[ENA]
¢þ
>WENV182709646
OJPB01013506
[OJPB] human gut metagenome; stool sample
788
871
+
Leu
TAG
[ENA]
¢þ
>WENV182805551
OJVE01004173
[OJVE] human gut metagenome; human gut
490
407
-
Leu
TAG
[ENA]
¢þ
>W141285394
JANS01000016
Bacillota
Streptococcus sp. AS20 [JANS]
31136
31217
+
Leu
TAG
[ENA]
¡û
>WENV182880058
OKRZ01075805
[OKRZ] human gut metagenome; faeces
358
275
-
Leu
TAG
[ENA]
¢þ
>WENV182951257
OKVU01000049
[OKVU] human gut metagenome; human gut
375
458
+
Leu
TAG
[ENA]
¢þ
>WENV182954949
OKWB01000270
[OKWB] human gut metagenome; stool
8386
8303
-
Leu
TAG
[ENA]
¢þ
>WENV182995496
OLBH01008368
[OLBH] human gut metagenome; human gut
401
318
-
Leu
TAG
[ENA]
¢þ
>WENV183013950
OLEH01016501
[OLEH] human gut metagenome; human gut
242
325
+
Leu
TAG
[ENA]
¢þ
>WENV183016545
OLES01003558
[OLES] human gut metagenome; human gut
1737
1654
-
Leu
TAG
[ENA]
¢þ
>WENV183027027
OLFU01013990
[OLFU] human gut metagenome; faeces
2106
2023
-
Leu
TAG
[ENA]
¢þ
>WENV183104905
OLNK01003308
[OLNK] human gut metagenome; faeces
245
328
+
Leu
TAG
[ENA]
¢þ
>WENV183136356
OLOF01001454
[OLOF] human gut metagenome; faeces
761
844
+
Leu
TAG
[ENA]
¢þ
>WENV183155158
OLOR01079321
[OLOR] human gut metagenome; faeces
241
324
+
Leu
TAG
[ENA]
¢þ
>WENV183249886
OLRG01014935
[OLRG] human gut metagenome; faeces
1403
1320
-
Leu
TAG
[ENA]
¢þ
>WENV183316828
OLVT01000479
[OLVT] human gut metagenome; faeces
1461
1378
-
Leu
TAG
[ENA]
¢þ
>WENV183355611
OLXD01009537
[OLXD] human gut metagenome; feces
1266
1183
-
Leu
TAG
[ENA]
¢þ
>WENV183363657
OLXL01012148
[OLXL] human gut metagenome; feces
1579
1496
-
Leu
TAG
[ENA]
¢þ
>WENV183569299
OOCB01027638
[OOCB] human gut metagenome; human gut
1280
1197
-
Leu
TAG
[ENA]
¢þ
>WENV183655340
OQWD01014609
[OQWD] human gut metagenome; human gut
867
784
-
Leu
TAG
[ENA]
¢þ
>WENV170079403
CDZW01003602
[CDZW] gut metagenome; human stools
509
426
-
Leu
TAG
[ENA]
¢þ
>C181039234
CP019801
Bacillota
Streptococcus agalactiae SA33 [CP019801]
177501
177584
+
Leu
TAG
-
¡û
>C181039982
CP019813
Bacillota
Streptococcus agalactiae SA97 [CP019813]
176829
176912
+
Leu
TAG
-
¡û
>C181053986
CP021773
Bacillota
Streptococcus agalactiae B105 [CP021773]
2060705
2060622
-
Leu
TAG
-
¡û
>C181053996
CP021773
Bacillota
Streptococcus agalactiae B105 [CP021773]
2054874
2054791
-
Leu
TAG
-
¡û
>C181054046
CP021773
Bacillota
Streptococcus agalactiae B105 [CP021773]
1658670
1658587
-
Leu
TAG
-
¡û
>C181068011
CP022537
Bacillota
Streptococcus agalactiae 874391 [CP022537]
21557
21640
+
Leu
TAG
-
¡û
>C181068021
CP022537
Bacillota
Streptococcus agalactiae 874391 [CP022537]
27388
27471
+
Leu
TAG
-
¡û
>C181068071
CP022537
Bacillota
Streptococcus agalactiae 874391 [CP022537]
466625
466708
+
Leu
TAG
-
¡û
>C191081835
CP031881
Bacillota
Streptococcus thermophilus ST106 [CP031881]
22799
22882
+
Leu
TAG
-
¡û
>C191081867
CP031881
Bacillota
Streptococcus thermophilus ST106 [CP031881]
130566
130649
+
Leu
TAG
-
¡û
>C191203668
LR134275
Bacillota
Streptococcus vestibularis NCTC12167 [LR134275]
22005
22088
+
Leu
TAG
-
¡û
>C191203699
LR134275
Bacillota
Streptococcus vestibularis NCTC12167 [LR134275]
138234
138317
+
Leu
TAG
-
¡û
>C191203711
LR134275
Bacillota
Streptococcus vestibularis NCTC12167 [LR134275]
368784
368867
+
Leu
TAG
-
¡û
>W1910200954
FJPB01000137
Bacillota
Streptococcus agalactiae [FJPB]
169
86
-
Leu
TAG
[ENA]
¡û
>W1910201382
FJPP01000102
Bacillota
Streptococcus agalactiae [FJPP]
169
86
-
Leu
TAG
[ENA]
¡û
>W1910201879
FJQH01000070
Bacillota
Streptococcus agalactiae [FJQH]
169
86
-
Leu
TAG
[ENA]
¡û
>W1910203144
FJRW01000118
Bacillota
Streptococcus agalactiae [FJRW]
210
293
+
Leu
TAG
[ENA]
¡û
>W1910203202
FJRY01000135
Bacillota
Streptococcus agalactiae [FJRY]
210
293
+
Leu
TAG
[ENA]
¡û
>W1910203535
FJSL01000092
Bacillota
Streptococcus agalactiae [FJSL]
169
86
-
Leu
TAG
[ENA]
¡û
>W1910203660
FJSQ01000079
Bacillota
Streptococcus agalactiae [FJSQ]
210
293
+
Leu
TAG
[ENA]
¡û
>W1910203820
FJSW01000091
Bacillota
Streptococcus agalactiae [FJSW]
169
86
-
Leu
TAG
[ENA]
¡û
>W1910203872
FJSY01000117
Bacillota
Streptococcus agalactiae [FJSY]
210
293
+
Leu
TAG
[ENA]
¡û
>W1910204276
FJTO01000070
Bacillota
Streptococcus agalactiae [FJTO]
196
279
+
Leu
TAG
[ENA]
¡û
>W1910912644
NHPL01000001
Bacillota
Streptococcus agalactiae VBP3124 [NHPL]
409742
409659
-
Leu
TAG
[ENA]
¡û
>W1911146649
NPDJ01000001
Bacillota
Streptococcus salivarius F6-1 [NPDJ]
20122
20205
+
Leu
TAG
[ENA]
¡û
>W1911146681
NPDJ01000004
Bacillota
Streptococcus salivarius F6-1 [NPDJ]
5295
5378
+
Leu
TAG
[ENA]
¡û
>W1911146693
NPDJ01000005
Bacillota
Streptococcus salivarius F6-1 [NPDJ]
205129
205212
+
Leu
TAG
[ENA]
¡û
>W1911595234
PNGE01000007
Bacillota
Streptococcus agalactiae UMB0049 [PNGE]
5207
5290
+
Leu
TAG
[ENA]
¡û
>W1911747489
QWDL01000001
Bacillota
Streptococcus anginosus CALM001 [QWDL]
437
518
+
Leu
TAG
[ENA]
¡û
>W1911800941
QYTE01000004
Bacillota
Streptococcus agalactiae ILRI032 [QYTE]
2027
1944
-
Leu
TAG
[ENA]
¡û
>W1911800970
QYTE01000017
Bacillota
Streptococcus agalactiae ILRI032 [QYTE]
82
165
+
Leu
TAG
[ENA]
¡û
>W1911801483
QYTM01000007
Bacillota
Streptococcus agalactiae CH11 [QYTM]
499
582
+
Leu
TAG
[ENA]
¡û
>W1911801516
QYTM01000025
Bacillota
Streptococcus agalactiae CH11 [QYTM]
597
680
+
Leu
TAG
[ENA]
¡û
>W1911801824
QYTR01000009
Bacillota
Streptococcus agalactiae CH35-134 [QYTR]
6585
6502
-
Leu
TAG
[ENA]
¡û
>W1911801831
QYTR01000011
Bacillota
Streptococcus agalactiae CH35-134 [QYTR]
355
438
+
Leu
TAG
[ENA]
¡û
>W1810188404
PKIH01000044
Bacillota
Streptococcus anginosus UMB0142 [PKIH]
681
600
-
Leu
TAG
[ENA]
¡û
>W1810364087
PVSW01000017
Bacillota
Streptococcus anginosus gl [PVSW]
2334
2253
-
Leu
TAG
[ENA]
¡û
>W1810606519
QGRA01000011
Bacillota
Streptococcus agalactiae QMA0497 [QGRA]
810
893
+
Leu
TAG
[ENA]
¡û
>W1810606587
QGRC01000011
Bacillota
Streptococcus agalactiae QMA0495 [QGRC]
3543
3626
+
Leu
TAG
[ENA]
¡û
>W1510454546
CPVQ01000011
Bacillota
Streptococcus agalactiae RBH12 [CPVQ]
68639
68556
-
Leu
TAG
[ENA]
¡û
>W1510455945
CPWS01000005
Bacillota
Streptococcus agalactiae BG-NI-002 [CPWS]
169
86
-
Leu
TAG
[ENA]
¡û
>W1510458504
CPYN01000018
Bacillota
Streptococcus agalactiae BG-NI-010 [CPYN]
631
548
-
Leu
TAG
[ENA]
¡û
>W1510459272
CPZB01000009
Bacillota
Streptococcus agalactiae B42VD [CPZB]
63813
63730
-
Leu
TAG
[ENA]
¡û
>W1510460341
CPZV01000013
Bacillota
Streptococcus agalactiae DK-NI-011 [CPZV]
631
548
-
Leu
TAG
[ENA]
¡û
>W1510463449
CQBY01000043
Bacillota
Streptococcus agalactiae DE-NI-010 [CQBY]
9179
9096
-
Leu
TAG
[ENA]
¡û
>W1510463883
CQCG01000006
Bacillota
Streptococcus agalactiae BG-NI-009 [CQCG]
100267
100350
+
Leu
TAG
[ENA]
¡û
>W1510466156
CQDX01000010
Bacillota
Streptococcus agalactiae RBH05 [CQDX]
169
86
-
Leu
TAG
[ENA]
¡û
>W1510573489
CTKP01000018
Bacillota
Streptococcus agalactiae GB-NI-007 [CTKP]
22627
22544
-
Leu
TAG
[ENA]
¡û
>W1511444331
JUTW01000041
Bacillota
Streptococcus agalactiae 765_SAGA [JUTW]
210
293
+
Leu
TAG
[ENA]
¡û
>W1511460819
JVLV01000048
Bacillota
Streptococcus constellatus 317_SINT [JVLV]
5733
5814
+
Leu
TAG
[ENA]
¡û
>W1511623695
LCXM01000019
Bacillota
Streptococcus agalactiae IT-PW-0063 [LCXM]
17029
16946
-
Leu
TAG
[ENA]
¡û
>W1511625967
LCZN01000002
Bacillota
Streptococcus agalactiae 383728 [LCZN]
26114
26031
-
Leu
TAG
[ENA]
¡û
>W1511626064
LCZP01000021
Bacillota
Streptococcus agalactiae 404288 [LCZP]
285
368
+
Leu
TAG
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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