This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113235 (86 seq.)
>W1710797077
LJST01000004
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
91
5
-
Leu
GAG
[ENA]
¡û
>W1710797120
LJST01000214
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
2687
2601
-
Leu
GAG
[ENA]
¡û
>W1710805102
LJZS01000025
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
7128
7214
+
Leu
GAG
[ENA]
¡û
>W1711178258
LWGO01000013
Gammaproteobacteria
Halomonas caseinilytica elongata [LWGO]
34288
34202
-
Leu
GAG
[ENA]
¡û
>W1711261903
LYXG01000005
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
33779
33693
-
Leu
GAG
[ENA]
¡û
>W1711302704
MAJD01000001
Gammaproteobacteria
Halomonas elongata [MAJD]
2309685
2309599
-
Leu
GAG
[ENA]
¡û
>W1711339793
MCAP01000011
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
196054
195968
-
Leu
GAG
[ENA]
¡û
>W1711688824
MSDO01000002
Gammaproteobacteria
Salinicola socius [MSDO]
138334
138420
+
Leu
GAG
[ENA]
¡û
>W1711750476
MUMZ01000089
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
33581
33495
-
Leu
GAG
[ENA]
¡û
>W1711959307
NBYR01000024
Gammaproteobacteria
Halomonas sp. CSM-2 [NBYR]
15099
15185
+
Leu
GAG
[ENA]
¡û
>W1712082100
NHOU01000005
Gammaproteobacteria
Salinicola salarius [NHOU]
126796
126710
-
Leu
GAG
[ENA]
¡û
>C171073636
CP018139
Gammaproteobacteria
Halomonas aestuarii Hb3 [CP018139]
1885489
1885575
+
Leu
GAG
-
¡û
>C171092292
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
255730
255816
+
Leu
GAG
-
¡û
>C006978
CP000285
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [CP000285]
3428218
3428132
-
Leu
GAG
[Ensembl]
¡û
>WENV180298508
OBJA01385514
[OBJA] soil metagenome; sediment, water from around vicinity
75
161
+
Leu
GAG
[ENA]
¢þ
>WENV181233924
OFET01000310
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
33926
33840
-
Leu
GAG
[ENA]
¢þ
>WENV181234718
OFEU01002002
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
3519
3605
+
Leu
GAG
[ENA]
¢þ
>WENV170176546
CEOS01091330
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1263
1177
-
Leu
GAG
[ENA]
¢þ
>WENV170337304
CETA01097408
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1464
1550
+
Leu
GAG
[ENA]
¢þ
>WENV170362675
CETM01091459
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10653
10567
-
Leu
GAG
[ENA]
¢þ
>WENV170487750
CEVO01088097
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2078
1992
-
Leu
GAG
[ENA]
¢þ
>WENV170679834
LFCJ01000728
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
14587
14673
+
Leu
GAG
[ENA]
¢þ
>WENV170703159
LKMJ01007327
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
271
185
-
Leu
GAG
[ENA]
¢þ
>WENV170965305
MTEU01000448
[MTEU] soil metagenome; naturally attenuated soil
33869
33783
-
Leu
GAG
[ENA]
¢þ
>WENV170965800
MTEV01004056
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
22499
22585
+
Leu
GAG
[ENA]
¢þ
>WENV170966101
MTEX01001412
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
23523
23609
+
Leu
GAG
[ENA]
¢þ
>C181084584
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
1234059
1233973
-
Leu
GAG
-
¡û
>W141557602
JHVH01000004
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
32574
32488
-
Leu
GAG
[ENA]
¡û
>W09102580
AAHZ01000028
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [AAHZ]
29350
29264
-
Leu
GAG
[ENA]
¡û
>W141703454
JMMC01000014
Gammaproteobacteria
Halomonas sp. HL-48 [JMMC]
258626
258712
+
Leu
GAG
[ENA]
¡û
>W141754534
JNVT01000108
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
79460
79546
+
Leu
GAG
[ENA]
¡û
>W141802232
JPEU01000457
Gammaproteobacteria
Halomonas sp. SUBG004 [JPEU]
805
719
-
Leu
GAG
[ENA]
¡û
>W1910339612
FTLE01000005
Gammaproteobacteria
Halomonas massiliensis Marseille-P2426 [FTLE]
35054
34968
-
Leu
GAG
[ENA]
¡û
>W1910840511
MZZK01000001
Gammaproteobacteria
Chromohalobacter salexigens ANJ 207 [MZZK]
3519002
3518916
-
Leu
GAG
[ENA]
¡û
>W1911245429
NSKB01000003
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
587091
587177
+
Leu
GAG
[ENA]
¡û
>W1810062665
PDOG01000010
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
35057
34971
-
Leu
GAG
[ENA]
¡û
>W1810062696
PDOH01000033
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
53065
53151
+
Leu
GAG
[ENA]
¡û
>W1810199969
PNRE01000084
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
13300
13386
+
Leu
GAG
[ENA]
¡û
>W1810200051
PNRG01000011
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
34140
34226
+
Leu
GAG
[ENA]
¡û
>W1810363632
PVRV01000016
Gammaproteobacteria
Phytohalomonas tamaricis R4HLG17 [PVRV]
44359
44445
+
Leu
GAG
[ENA]
¡û
>W1810364777
PVTM01000018
Gammaproteobacteria
Halomonas ventosae USBA 854 [PVTM]
35081
34995
-
Leu
GAG
[ENA]
¡û
>W1810385372
PXNS01000003
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
69550
69464
-
Leu
GAG
[ENA]
¡û
>W1810385454
PXNT01000014
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
44332
44418
+
Leu
GAG
[ENA]
¡û
>W1810423959
PYUD01000002
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
34118
34032
-
Leu
GAG
[ENA]
¡û
>W1810426011
PYVV01000018
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
66234
66148
-
Leu
GAG
[ENA]
¡û
>W1810426104
PYVX01000003
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
34146
34060
-
Leu
GAG
[ENA]
¡û
>W1810444033
PZJK01000003
Gammaproteobacteria
Salinicola sp. RZ23 [PZJK]
101804
101890
+
Leu
GAG
[ENA]
¡û
>W1810444093
PZJL01000001
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
193178
193092
-
Leu
GAG
[ENA]
¡û
>W1810444151
PZJM01000001
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
286818
286732
-
Leu
GAG
[ENA]
¡û
>W1810444300
PZJO01000003
Gammaproteobacteria
Salinicola endophyticus CPA92 [PZJO]
617914
618000
+
Leu
GAG
[ENA]
¡û
>W1810444344
PZJP01000004
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
312974
313060
+
Leu
GAG
[ENA]
¡û
>W1810444506
PZJR01000013
Gammaproteobacteria
Salinicola sp. CPA57 [PZJR]
113720
113634
-
Leu
GAG
[ENA]
¡û
>W1810444546
PZJS01000006
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
118570
118484
-
Leu
GAG
[ENA]
¡û
>W1810444603
PZJT01000009
Gammaproteobacteria
Salinicola salarius DSM 18044 [PZJT]
66327
66413
+
Leu
GAG
[ENA]
¡û
>W1810444659
PZJU01000007
Gammaproteobacteria
Salinicola peritrichatus JCM 18795 [PZJU]
29020
28934
-
Leu
GAG
[ENA]
¡û
>W1810444758
PZJV01000006
Gammaproteobacteria
Salinicola halophilus CECT 5903 [PZJV]
28459
28373
-
Leu
GAG
[ENA]
¡û
>W1810444787
PZJW01000004
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
267849
267935
+
Leu
GAG
[ENA]
¡û
>W1810608662
QGTM01000016
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
32842
32928
+
Leu
GAG
[ENA]
¡û
>W1810609450
QGTY01000008
Gammaproteobacteria
Chromohalobacter salexigens 40a_TX [QGTY]
29677
29591
-
Leu
GAG
[ENA]
¡û
>W1810624166
QHGY01000014
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
32074
32160
+
Leu
GAG
[ENA]
¡û
>W1810673438
QJUB01000010
Gammaproteobacteria
Halomonas elongata MH25661 [QJUB]
32727
32641
-
Leu
GAG
[ENA]
¡û
>W1810695997
QLSX01000011
Gammaproteobacteria
Halomonas taeanensis USBA-857 [QLSX]
34613
34527
-
Leu
GAG
[ENA]
¡û
>C11110106
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
3690757
3690671
-
Leu
GAG
[Ensembl]
¡û
>W1511334737
JQNW01000006
Gammaproteobacteria
Chromohalobacter israelensis 6768 [JQNW]
71448
71534
+
Leu
GAG
[ENA]
¡û
>W1511500051
JXAS01000019
Gammaproteobacteria
Halomonas caseinilytica WD26 [JXAS]
71740
71826
+
Leu
GAG
[ENA]
¡û
>W1511518460
JXYB01000027
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
66098
66012
-
Leu
GAG
[ENA]
¡û
>C161109460
LT593974
Gammaproteobacteria
Halomonas sp. HL-93 [LT593974]
3639568
3639482
-
Leu
GAG
-
¡û
>W121063500
AJKS02000002
Gammaproteobacteria
Halomonas smyrnensis AAD6 [AJKS]
164428
164342
-
Leu
GAG
[ENA]
¡û
>W1610082167
BDEO01000012
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
34367
34281
-
Leu
GAG
[ENA]
¡û
>W1610082216
BDEP01000018
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
34101
34015
-
Leu
GAG
[ENA]
¡û
>W1610661034
LJST01000004
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
91
5
-
Leu
GAG
[ENA]
¡û
>W1610661077
LJST01000214
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
2687
2601
-
Leu
GAG
[ENA]
¡û
>W1610668959
LJZS01000025
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
7128
7214
+
Leu
GAG
[ENA]
¡û
>W1611023826
LYXG01000005
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
33779
33693
-
Leu
GAG
[ENA]
¡û
>W1611053029
MAJD01000001
Gammaproteobacteria
Halomonas elongata [MAJD]
2309685
2309599
-
Leu
GAG
[ENA]
¡û
>W1710080940
BDEO01000012
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
34367
34281
-
Leu
GAG
[ENA]
¡û
>W1710080989
BDEP01000018
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
34101
34015
-
Leu
GAG
[ENA]
¡û
>W1710516116
FNCI01000009
Gammaproteobacteria
Halomonas taeanensis [FNCI]
34607
34521
-
Leu
GAG
[ENA]
¡û
>W1710523917
FNII01000004
Gammaproteobacteria
Halomonas arcis [FNII]
40361
40275
-
Leu
GAG
[ENA]
¡û
>W1710528569
FNNI01000003
Gammaproteobacteria
Aidingimonas halophila [FNNI]
445327
445413
+
Leu
GAG
[ENA]
¡û
>W1710539176
FNVC01000027
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
33908
33822
-
Leu
GAG
[ENA]
¡û
>W1710545773
FOBT01000017
Gammaproteobacteria
Halomonas caseinilytica [FOBT]
34415
34329
-
Leu
GAG
[ENA]
¡û
>W1710552237
FOGS01000005
Gammaproteobacteria
Halomonas subterranea [FOGS]
34187
34101
-
Leu
GAG
[ENA]
¡û
>W1710558534
FOLY01000009
Gammaproteobacteria
Kushneria avicenniae [FOLY]
24972
24886
-
Leu
GAG
[ENA]
¡û
>W1710577175
FPAQ01000006
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
9752
9666
-
Leu
GAG
[ENA]
¡û
>W1710589838
FRAL01000010
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [FRAL]
78735
78821
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK