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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113279 (28 seq.)
>W1711934399
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
164342
164256
-
Leu
GAG
[ENA]
¡û
>W1712080452
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
46843
46757
-
Leu
GAG
[ENA]
¡û
>WENV013578
AACY020373710
Marine microbial communities from Global Ocean Sampling (GOS)
2625
2711
+
Leu
GAG
[ENA]
>C019775
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
1158691
1158777
+
Leu
GAG
[Ensembl]
¡û
>C022224
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1199787
1199873
+
Leu
GAG
[Ensembl]
¡û
>C022326
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1192179
1192265
+
Leu
GAG
[Ensembl]
¡û
>C022422
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1254540
1254626
+
Leu
GAG
[Ensembl]
¡û
>C022926
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1245541
1245627
+
Leu
GAG
[Ensembl]
¡û
>WENV180311058
OBJT01100906
[OBJT] soil metagenome; soil
119
33
-
Leu
GAG
[ENA]
¢þ
>W141171256
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
12696
12610
-
Leu
GAG
[ENA]
¡û
>WENV020706
AACY020557411
Marine microbial communities from Global Ocean Sampling (GOS)
5554
5640
+
Leu
GAG
[ENA]
>C181057587
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2333982
2333896
-
Leu
GAG
-
¡û
>C181062992
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3575079
3574993
-
Leu
GAG
-
¡û
>W141520041
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
68146
68232
+
Leu
GAG
[ENA]
¡û
>C191205224
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3257925
3258011
+
Leu
GAG
-
¡û
>W09102829
AAIN01000043
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
7197
7283
+
Leu
GAG
[ENA]
¡û
>W09104080
AALH01000075
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
10930
10844
-
Leu
GAG
[ENA]
¡û
>W09104627
AALX01000062
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
986
1072
+
Leu
GAG
[ENA]
¡û
>W1910913786
NHRI01000012
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
22694
22608
-
Leu
GAG
[ENA]
¡û
>W1810073435
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
244821
244735
-
Leu
GAG
[ENA]
¡û
>W1810587740
QFLG01000020
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
78666
78580
-
Leu
GAG
[ENA]
¡û
>W1511403531
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
1105800
1105886
+
Leu
GAG
[ENA]
¡û
>W11169882
AFOZ01000014
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
393283
393369
+
Leu
GAG
[ENA]
¡û
>W121103333
AKZL01000064
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
16109
16023
-
Leu
GAG
[ENA]
¡û
>W1610617835
LGYY01000088
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
51468
51382
-
Leu
GAG
[ENA]
¡û
>W1710692495
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
113051
113137
+
Leu
GAG
[ENA]
¡û
>W1710706698
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
369284
369198
-
Leu
GAG
[ENA]
¡û
>W1710744010
LGYY01000088
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
51468
51382
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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