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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113314 (54 seq.)
>W1710934465
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
93987
94073
+
Leu
TAG
[ENA]
¡û
>W1710934504
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
290545
290631
+
Leu
TAG
[ENA]
¡û
>W1711147348
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
930035
930121
+
Leu
TAG
[ENA]
¡û
>W1711149057
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
593643
593729
+
Leu
TAG
[ENA]
¡û
>W1711149093
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
627864
627950
+
Leu
TAG
[ENA]
¡û
>W1711149130
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
367559
367645
+
Leu
TAG
[ENA]
¡û
>W1711149167
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1055216
1055302
+
Leu
TAG
[ENA]
¡û
>W1711272421
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
346246
346332
+
Leu
TAG
[ENA]
¡û
>W1711281981
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
464659
464745
+
Leu
TAG
[ENA]
¡û
>W1711282034
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
487161
487247
+
Leu
TAG
[ENA]
¡û
>W1711301920
MAIK01000535
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
489
403
-
Leu
TAG
[ENA]
¡û
>W1711421598
MHZG01000008
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
58116
58202
+
Leu
TAG
[ENA]
¡û
>W1711932802
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
778858
778944
+
Leu
TAG
[ENA]
¡û
>W1712077076
NGUP01000005
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
65583
65497
-
Leu
TAG
[ENA]
¡û
>C171035112
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1073747
1073833
+
Leu
TAG
-
¡û
>C171035151
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1092580
1092666
+
Leu
TAG
-
¡û
>C171035189
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1020637
1020723
+
Leu
TAG
-
¡û
>C017381
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
930035
930121
+
Leu
TAG
[Ensembl]
¡û
>WENV181367478
OFQB01003161
[OFQB] freshwater metagenome; Freshwater Lake
332
418
+
Leu
TAG
[ENA]
¢þ
>WENV181368166
OFQK01000634
[OFQK] freshwater metagenome; Freshwater Lake
1044
1130
+
Leu
TAG
[ENA]
¢þ
>WENV181368377
OFQL01001605
[OFQL] freshwater metagenome; Freshwater Lake
807
721
-
Leu
TAG
[ENA]
¢þ
>WENV181368734
OFQN01000167
[OFQN] freshwater metagenome; Freshwater Lake
4825
4739
-
Leu
TAG
[ENA]
¢þ
>WENV181369267
OFQP01000051
[OFQP] freshwater metagenome; Freshwater Lake
19539
19625
+
Leu
TAG
[ENA]
¢þ
>WENV181369857
OFQR01000810
[OFQR] freshwater metagenome; Freshwater Lake
2763
2849
+
Leu
TAG
[ENA]
¢þ
>WENV181370147
OFQS01000119
[OFQS] freshwater metagenome; Freshwater Lake
9968
10054
+
Leu
TAG
[ENA]
¢þ
>WENV181370533
OFQT01000106
[OFQT] freshwater metagenome; Freshwater Lake
5785
5871
+
Leu
TAG
[ENA]
¢þ
>WENV181395653
OFSB01000141
[OFSB] freshwater metagenome; Freshwater Lake
6292
6378
+
Leu
TAG
[ENA]
¢þ
>WENV181853948
OGWJ01002703
[OGWJ] freshwater metagenome; freshwater
354
440
+
Leu
TAG
[ENA]
¢þ
>WENV181854875
OGWK01031787
[OGWK] freshwater metagenome; freshwater
162
248
+
Leu
TAG
[ENA]
¢þ
>WENV181855821
OGWM01002529
[OGWM] freshwater metagenome; freshwater
1823
1737
-
Leu
TAG
[ENA]
¢þ
>C08007633
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
784725
784642
-
Leu
TAG
[Ensembl]
¡û
>WENV170141989
CENX01302246
[CENX] marine metagenome genome assembly TARA_018_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
279
193
-
Leu
TAG
[ENA]
¢þ
>WENV170154833
CEOF01276860
[CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
87
1
-
Leu
TAG
[ENA]
¢þ
>WENV170873137
MDTB01228227
[MDTB] marine metagenome; seawater
6666
6580
-
Leu
TAG
[ENA]
¢þ
>C181078384
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
961671
961757
+
Leu
TAG
-
¡û
>C181187697
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
814558
814472
-
Leu
TAG
-
¡û
>C181218874
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
853704
853790
+
Leu
TAG
-
¡û
>C181218940
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
811487
811573
+
Leu
TAG
-
¡û
>C181218980
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
655056
655142
+
Leu
TAG
-
¡û
>C181219031
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
1032652
1032566
-
Leu
TAG
-
¡û
>C181219057
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1494230
1494316
+
Leu
TAG
-
¡û
>C181219084
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
579472
579558
+
Leu
TAG
-
¡û
>W09106276
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
59043
59129
+
Leu
TAG
[ENA]
¡û
>W09107500
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
808823
808909
+
Leu
TAG
[ENA]
¡û
>W1911490738
OANS01000002
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
287125
287039
-
Leu
TAG
[ENA]
¡û
>W1810699154
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
1238669
1238583
-
Leu
TAG
[ENA]
¡û
>W1810699201
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
484275
484189
-
Leu
TAG
[ENA]
¡û
>WENV053357
AACY023091451
Marine microbial communities from Global Ocean Sampling (GOS)
148
234
+
Leu
TAG
[ENA]
>C161092395
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1023450
1023364
-
Leu
TAG
[Ensembl]
¡û
>WENV057743
AACY023305096
Marine microbial communities from Global Ocean Sampling (GOS)
693
605
-
Leu
TAG
[ENA]
>WENV061300
AACY023428695
Marine microbial communities from Global Ocean Sampling (GOS)
1671
1585
-
Leu
TAG
[ENA]
>W1610791996
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
93987
94073
+
Leu
TAG
[ENA]
¡û
>W1610792035
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
290545
290631
+
Leu
TAG
[ENA]
¡û
>W1611052760
MAIK01000535
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
489
403
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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