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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113515 (100 seq.)
>W131170199
ARFI01000006
Bacillota
Paenibacillus sp. HW567 [ARFI]
1558994
1558907
-
Leu
CAG
[ENA]
¡û
>W1711167341
LVWH01000012
Bacillota
Paenibacillus sp. P3E [LVWH]
6927
7012
+
Leu
CAG
[ENA]
¡û
>W1711167447
LVWI01000036
Bacillota
Paenibacillus helianthi P26E [LVWI]
9276
9191
-
Leu
CAG
[ENA]
¡û
>W1711169297
LVYY01000077
Bacillota
Paenibacillus sp. P32E [LVYY]
101280
101365
+
Leu
CAG
[ENA]
¡û
>W1711169326
LVYZ01000027
Bacillota
Paenibacillus sp. P46E [LVYZ]
134869
134954
+
Leu
CAG
[ENA]
¡û
>W1711499532
MKQK01000048
Bacillota
Paenibacillus odorifer [MKQK]
61097
61180
+
Leu
CAG
[ENA]
¡û
>W1711499590
MKQK01000130
Bacillota
Paenibacillus odorifer [MKQK]
65223
65137
-
Leu
CAG
[ENA]
¡û
>W1711499593
MKQL01000001
Bacillota
Paenibacillus odorifer [MKQL]
216378
216464
+
Leu
CAG
[ENA]
¡û
>W1711499595
MKQL01000008
Bacillota
Paenibacillus odorifer [MKQL]
389
306
-
Leu
CAG
[ENA]
¡û
>W1711499691
MKQM01000057
Bacillota
Paenibacillus odorifer [MKQM]
67347
67264
-
Leu
CAG
[ENA]
¡û
>W1711499699
MKQM01000066
Bacillota
Paenibacillus odorifer [MKQM]
65335
65249
-
Leu
CAG
[ENA]
¡û
>W1711499724
MKQN01000008
Bacillota
Paenibacillus odorifer [MKQN]
102086
102000
-
Leu
CAG
[ENA]
¡û
>W1711499751
MKQN01000051
Bacillota
Paenibacillus odorifer [MKQN]
307762
307679
-
Leu
CAG
[ENA]
¡û
>W1711499840
MKQO01000076
Bacillota
Paenibacillus odorifer [MKQO]
194559
194473
-
Leu
CAG
[ENA]
¡û
>W1711499841
MKQO01000076
Bacillota
Paenibacillus odorifer [MKQO]
68058
67975
-
Leu
CAG
[ENA]
¡û
>W1711499872
MKQP01000014
Bacillota
Paenibacillus odorifer [MKQP]
164140
164057
-
Leu
CAG
[ENA]
¡û
>W1711499875
MKQP01000018
Bacillota
Paenibacillus odorifer [MKQP]
129081
129167
+
Leu
CAG
[ENA]
¡û
>W1711632790
MPTB01000025
Bacillota
Paenibacillus borealis [MPTB]
51663
51749
+
Leu
CAG
[ENA]
¡û
>W1711632795
MPTB01000042
Bacillota
Paenibacillus borealis [MPTB]
11453
11368
-
Leu
CAG
[ENA]
¡û
>W1711632951
MPTE01000005
Bacillota
Paenibacillus odorifer [MPTE]
218002
218089
+
Leu
CAG
[ENA]
¡û
>W1711632974
MPTE01000029
Bacillota
Paenibacillus odorifer [MPTE]
644
561
-
Leu
CAG
[ENA]
¡û
>W1711633015
MPTF01000001
Bacillota
Paenibacillus odorifer [MPTF]
199326
199239
-
Leu
CAG
[ENA]
¡û
>W1711633016
MPTF01000001
Bacillota
Paenibacillus odorifer [MPTF]
70416
70333
-
Leu
CAG
[ENA]
¡û
>W1711633085
MPTG01000009
Bacillota
Paenibacillus odorifer [MPTG]
209242
209329
+
Leu
CAG
[ENA]
¡û
>W1711633089
MPTG01000017
Bacillota
Paenibacillus odorifer [MPTG]
60884
60967
+
Leu
CAG
[ENA]
¡û
>W1711633147
MPTH01000003
Bacillota
Paenibacillus odorifer [MPTH]
257438
257525
+
Leu
CAG
[ENA]
¡û
>W1711633164
MPTH01000040
Bacillota
Paenibacillus odorifer [MPTH]
61103
61186
+
Leu
CAG
[ENA]
¡û
>W1711633205
MPTI01000004
Bacillota
Paenibacillus odorifer [MPTI]
268213
268300
+
Leu
CAG
[ENA]
¡û
>W1711633206
MPTI01000004
Bacillota
Paenibacillus odorifer [MPTI]
397053
397136
+
Leu
CAG
[ENA]
¡û
>W1711633272
MPTJ01000005
Bacillota
Paenibacillus odorifer [MPTJ]
68024
67937
-
Leu
CAG
[ENA]
¡û
>W1711633311
MPTJ01000039
Bacillota
Paenibacillus odorifer [MPTJ]
312
229
-
Leu
CAG
[ENA]
¡û
>W1711633345
MPTK01000008
Bacillota
Paenibacillus odorifer [MPTK]
209564
209651
+
Leu
CAG
[ENA]
¡û
>W1711633396
MPTL01000004
Bacillota
Paenibacillus odorifer [MPTL]
230436
230523
+
Leu
CAG
[ENA]
¡û
>W1711633459
MPTM01000002
Bacillota
Paenibacillus odorifer [MPTM]
129770
129683
-
Leu
CAG
[ENA]
¡û
>W1711633460
MPTM01000002
Bacillota
Paenibacillus odorifer [MPTM]
858
775
-
Leu
CAG
[ENA]
¡û
>W1711633524
MPTN01000005
Bacillota
Paenibacillus odorifer [MPTN]
240184
240271
+
Leu
CAG
[ENA]
¡û
>W1711633527
MPTN01000009
Bacillota
Paenibacillus odorifer [MPTN]
167333
167250
-
Leu
CAG
[ENA]
¡û
>W1711633584
MPTO01000003
Bacillota
Paenibacillus odorifer [MPTO]
309971
309884
-
Leu
CAG
[ENA]
¡û
>W1711633585
MPTO01000003
Bacillota
Paenibacillus odorifer [MPTO]
180981
180898
-
Leu
CAG
[ENA]
¡û
>W1711633673
MPTP01000015
Bacillota
Paenibacillus odorifer [MPTP]
60885
60968
+
Leu
CAG
[ENA]
¡û
>W1711633674
MPTP01000022
Bacillota
Paenibacillus odorifer [MPTP]
65274
65188
-
Leu
CAG
[ENA]
¡û
>W1711633714
MPTQ01000001
Bacillota
Paenibacillus odorifer [MPTQ]
222398
222484
+
Leu
CAG
[ENA]
¡û
>W1711633715
MPTQ01000001
Bacillota
Paenibacillus odorifer [MPTQ]
348531
348614
+
Leu
CAG
[ENA]
¡û
>W1711633784
MPTR01000002
Bacillota
Paenibacillus odorifer [MPTR]
216136
216222
+
Leu
CAG
[ENA]
¡û
>W1711633785
MPTR01000002
Bacillota
Paenibacillus odorifer [MPTR]
342269
342352
+
Leu
CAG
[ENA]
¡û
>W1711633851
MPTS01000006
Bacillota
Paenibacillus odorifer [MPTS]
140667
140581
-
Leu
CAG
[ENA]
¡û
>W1711633852
MPTS01000006
Bacillota
Paenibacillus odorifer [MPTS]
14352
14269
-
Leu
CAG
[ENA]
¡û
>W1711633909
MPTT01000001
Bacillota
Paenibacillus odorifer [MPTT]
283426
283340
-
Leu
CAG
[ENA]
¡û
>W1711633910
MPTT01000001
Bacillota
Paenibacillus odorifer [MPTT]
157038
156955
-
Leu
CAG
[ENA]
¡û
>W1711633995
MPTU01000008
Bacillota
Paenibacillus odorifer [MPTU]
38499
38585
+
Leu
CAG
[ENA]
¡û
>W1711633996
MPTU01000008
Bacillota
Paenibacillus odorifer [MPTU]
165067
165150
+
Leu
CAG
[ENA]
¡û
>W1711634051
MPTV01000006
Bacillota
Paenibacillus odorifer [MPTV]
227582
227668
+
Leu
CAG
[ENA]
¡û
>W1711634062
MPTV01000008
Bacillota
Paenibacillus odorifer [MPTV]
164203
164120
-
Leu
CAG
[ENA]
¡û
>W1711636420
MPVM01000004
Bacillota
Paenibacillus odorifer [MPVM]
228727
228814
+
Leu
CAG
[ENA]
¡û
>W1711636421
MPVM01000004
Bacillota
Paenibacillus odorifer [MPVM]
357636
357719
+
Leu
CAG
[ENA]
¡û
>W1711636595
MPVO01000001
Bacillota
Paenibacillus odorifer [MPVO]
1140132
1140045
-
Leu
CAG
[ENA]
¡û
>W1711636596
MPVO01000001
Bacillota
Paenibacillus odorifer [MPVO]
1011006
1010923
-
Leu
CAG
[ENA]
¡û
>W1711636684
MPVP01000194
Bacillota
Paenibacillus odorifer [MPVP]
9745
9658
-
Leu
CAG
[ENA]
¡û
>W1711677989
MRTW01000005
Bacillota
Paenibacillus sp. FSL R7-0333 [MRTW]
121858
121943
+
Leu
CAG
[ENA]
¡û
>W1711677992
MRTW01000007
Bacillota
Paenibacillus sp. FSL R7-0333 [MRTW]
227932
228018
+
Leu
CAG
[ENA]
¡û
>W1711678056
MRTX01000007
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
123896
123811
-
Leu
CAG
[ENA]
¡û
>W1711678058
MRTX01000012
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
1769
1684
-
Leu
CAG
[ENA]
¡û
>C171123177
CP021780
Bacillota
Paenibacillus donghaensis KCTC 13049 [CP021780]
1681804
1681891
+
Leu
CAG
-
¡û
>C171123194
CP021780
Bacillota
Paenibacillus donghaensis KCTC 13049 [CP021780]
7298071
7298158
+
Leu
CAG
-
¡û
>W141022549
AJTY01000739
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
1901
1988
+
Leu
CAG
[ENA]
¡û
>W141072313
ASPS01000009
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
53426
53341
-
Leu
CAG
[ENA]
¡û
>W141072316
ASPS01000032
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
47533
47448
-
Leu
CAG
[ENA]
¡û
>W141072528
ASPV01000013
Bacillota
Paenibacillus sp. FSL H8-237 [ASPV]
123563
123649
+
Leu
CAG
[ENA]
¡û
>W141072602
ASPV01000126
Bacillota
Paenibacillus sp. FSL H8-237 [ASPV]
112898
112981
+
Leu
CAG
[ENA]
¡û
>W141072697
ASPX01000033
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
200680
200593
-
Leu
CAG
[ENA]
¡û
>W141072712
ASPX01000045
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
116161
116246
+
Leu
CAG
[ENA]
¡û
>W141073571
ASSG01000023
Bacillota
Paenibacillus graminis RSA19 [ASSG]
8839
8754
-
Leu
CAG
[ENA]
¡û
>W141073582
ASSG01000115
Bacillota
Paenibacillus graminis RSA19 [ASSG]
8592
8679
+
Leu
CAG
[ENA]
¡û
>W141233553
BAVZ01000001
Bacillota
Paenibacillus pini JCM 16418 [BAVZ]
476129
476216
+
Leu
CAG
[ENA]
¡û
>W141263421
CCDG010000054
Bacillota
Paenibacillus camerounensis G4 [CCDG]
57261
57174
-
Leu
CAG
[ENA]
¡û
>WENV170002028
AGFT01076872
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
203
117
-
Leu
CAG
[ENA]
¢þ
>C181054830
CP021965
Bacillota
Paenibacillus odorifer CBA7130 [CP021965]
2305750
2305837
+
Leu
CAG
-
¡û
>C181054831
CP021965
Bacillota
Paenibacillus odorifer CBA7130 [CP021965]
2434528
2434611
+
Leu
CAG
-
¡û
>C151046381
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
237682
237767
+
Leu
CAG
[Ensembl]
¡û
>C151046407
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
2893593
2893680
+
Leu
CAG
[Ensembl]
¡û
>C151047891
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
2698229
2698316
+
Leu
CAG
[Ensembl]
¡û
>C151048121
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
297570
297655
+
Leu
CAG
[Ensembl]
¡û
>C151048146
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
2738231
2738318
+
Leu
CAG
[Ensembl]
¡û
>C151050841
CP009428
Bacillota
Paenibacillus odorifer DSM 15391 [CP009428]
2318993
2319079
+
Leu
CAG
[Ensembl]
¡û
>C151050842
CP009428
Bacillota
Paenibacillus odorifer DSM 15391 [CP009428]
2450113
2450196
+
Leu
CAG
[Ensembl]
¡û
>C151104401
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
3029177
3029264
+
Leu
CAG
[Ensembl]
¡û
>WENV11102100
AGFT01076872
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
203
117
-
Leu
CAG
[ENA]
¡û
>W11177627
AGBD01000210
Bacillota
Paenibacillus riograndensis SBR5 [AGBD]
706
793
+
Leu
CAG
[ENA]
¡û
>W1610043412
BAZT01000001
Bacillota
Paenibacillus pini JCM 16418 [BAZT]
476129
476216
+
Leu
CAG
[ENA]
¡û
>W1610632614
LIPY01000113
Bacillota
Paenibacillus jilunlii [LIPY]
14082
13997
-
Leu
CAG
[ENA]
¡û
>W1610632627
LIPY01000122
Bacillota
Paenibacillus jilunlii [LIPY]
246797
246883
+
Leu
CAG
[ENA]
¡û
>W1610633879
LIRA01000156
Bacillota
Paenibacillus riograndensis [LIRA]
344
257
-
Leu
CAG
[ENA]
¡û
>W1610633928
LIRB01000071
Bacillota
Paenibacillus riograndensis [LIRB]
350
263
-
Leu
CAG
[ENA]
¡û
>W1710040572
BAZT01000001
Bacillota
Paenibacillus pini JCM 16418 [BAZT]
476129
476216
+
Leu
CAG
[ENA]
¡û
>W1710521535
FNGM01000001
Bacillota
Paenibacillus jilunlii [FNGM]
246924
247010
+
Leu
CAG
[ENA]
¡û
>W1710521547
FNGM01000002
Bacillota
Paenibacillus jilunlii [FNGM]
375976
375891
-
Leu
CAG
[ENA]
¡û
>W1710767000
LIPY01000113
Bacillota
Paenibacillus jilunlii [LIPY]
14082
13997
-
Leu
CAG
[ENA]
¡û
>W1710767013
LIPY01000122
Bacillota
Paenibacillus jilunlii [LIPY]
246797
246883
+
Leu
CAG
[ENA]
¡û
>W1710768311
LIRA01000156
Bacillota
Paenibacillus riograndensis [LIRA]
344
257
-
Leu
CAG
[ENA]
¡û
>W1710768360
LIRB01000071
Bacillota
Paenibacillus riograndensis [LIRB]
350
263
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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