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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113673 (50 seq.)
>W1710796446
LJSC01000005
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
89980
89897
-
Tyr
GTA
[ENA]
¡û
>W1711506129
MKWD01000020
Alphaproteobacteria
Rhodobacterales bacterium 65-51 [MKWD]
112835
112918
+
Tyr
GTA
[ENA]
¡û
>WENV180231858
OBCO01000018
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
297416
297333
-
Tyr
GTA
[ENA]
¢þ
>WENV180232766
OBCP01000006
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
569056
568973
-
Tyr
GTA
[ENA]
¢þ
>WENV180399918
OBQO01077239
[OBQO] marine metagenome; ENVO:00002010
288
371
+
Tyr
GTA
[ENA]
¢þ
>w001128
AAAE01000145
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
30412
30497
+
Tyr
GTA
[ENA]
¡û
>WENV180569414
OCLR01000056
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
77757
77674
-
Tyr
GTA
[ENA]
¢þ
>WENV180570522
OCLS01000203
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
17093
17176
+
Tyr
GTA
[ENA]
¢þ
>WENV180571295
OCLT01000037
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
183921
183838
-
Tyr
GTA
[ENA]
¢þ
>WENV180573534
OCLW01000036
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
187362
187279
-
Tyr
GTA
[ENA]
¢þ
>WENV180639607
OCRL01000038
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
183693
183610
-
Tyr
GTA
[ENA]
¢þ
>WENV180640450
OCRM01000018
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
297419
297336
-
Tyr
GTA
[ENA]
¢þ
>W09200019
AAMF01000004
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
147075
147158
+
Tyr
GTA
[ENA]
¡û
>C181017245
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
857085
857002
-
Tyr
GTA
-
¡û
>C181060586
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
3984578
3984495
-
Tyr
GTA
-
¡û
>C181081658
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
2780715
2780798
+
Tyr
GTA
-
¡û
>C181191130
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
857095
857012
-
Tyr
GTA
-
¡û
>C191151009
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
2114521
2114604
+
Tyr
GTA
-
¡û
>W142000627
BBJC01000001
Alphaproteobacteria
Falsirhodobacter sp. alg1 [BBJC]
101177
101260
+
Tyr
GTA
[ENA]
¡û
>W1910548848
FZOV01000001
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
936042
936125
+
Tyr
GTA
[ENA]
¡û
>C09200012
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
554052
553969
-
Tyr
GTA
[Ensembl]
¡û
>W1911491908
OAOQ01000001
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
7184
7101
-
Tyr
GTA
[ENA]
¡û
>W1911749444
QWGP01000006
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
149375
149458
+
Tyr
GTA
[ENA]
¡û
>W1911766271
QXDK01000003
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
175026
174943
-
Tyr
GTA
[ENA]
¡û
>W1911787285
QXXQ01000002
Alphaproteobacteria
Gemmobacter lutimaris YJ-T1-11 [QXXQ]
516892
516975
+
Tyr
GTA
[ENA]
¡û
>W1810116283
PHOB01000095
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
7059
6976
-
Tyr
GTA
[ENA]
¡û
>W1810445045
PZKG01000101
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
13562
13645
+
Tyr
GTA
[ENA]
¡û
>W1810463810
PZZW01000001
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
566884
566801
-
Tyr
GTA
[ENA]
¡û
>W1810476815
QAOH01000008
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
110947
110864
-
Tyr
GTA
[ENA]
¡û
>W1810504075
QBKP01000003
Alphaproteobacteria
Gemmobacter caeni DSM 21823 [QBKP]
1962
2045
+
Tyr
GTA
[ENA]
¡û
>W1810685592
QKZJ01000017
Alphaproteobacteria
Celeribacter halophilus DSM 26270 [QKZJ]
67188
67271
+
Tyr
GTA
[ENA]
¡û
>W1810685996
QKZS01000006
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
174252
174169
-
Tyr
GTA
[ENA]
¡û
>W1810699092
QMCC01000001
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
163722
163639
-
Tyr
GTA
[ENA]
¡û
>W1810785177
QRBG01000006
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
607699
607616
-
Tyr
GTA
[ENA]
¡û
>C152000022
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
3308648
3308731
+
Tyr
GTA
[Ensembl]
¡û
>W10200006
ACYY01000023
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
13018
12935
-
Tyr
GTA
[ENA]
¡û
>W11200007
ACYY01000023
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
13018
12935
-
Tyr
GTA
[ENA]
¡û
>W11200089
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
301857
301774
-
Tyr
GTA
[ENA]
¡û
>W122000139
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
1878958
1878875
-
Tyr
GTA
[ENA]
¡û
>W122000216
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
857094
857011
-
Tyr
GTA
[ENA]
¡û
>W1610660403
LJSC01000005
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
89980
89897
-
Tyr
GTA
[ENA]
¡û
>W1620001623
LRUC01000018
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
161192
161275
+
Tyr
GTA
[ENA]
¡û
>W1620001624
LRUD01000017
Alphaproteobacteria
Celeribacter halophilus [LRUD]
67342
67425
+
Tyr
GTA
[ENA]
¡û
>W1720001001
FNNW01000002
Alphaproteobacteria
Celeribacter indicus [FNNW]
251119
251202
+
Tyr
GTA
[ENA]
¡û
>W1720001109
FORH01000002
Alphaproteobacteria
Celeribacter neptunius [FORH]
421724
421807
+
Tyr
GTA
[ENA]
¡û
>W1720001112
FORY01000016
Alphaproteobacteria
Celeribacter halophilus [FORY]
67188
67271
+
Tyr
GTA
[ENA]
¡û
>W1720002077
LRUC01000018
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
161192
161275
+
Tyr
GTA
[ENA]
¡û
>W1720002078
LRUD01000017
Alphaproteobacteria
Celeribacter halophilus [LRUD]
67342
67425
+
Tyr
GTA
[ENA]
¡û
>W1710565558
FORH01000002
Alphaproteobacteria
Celeribacter neptunius [FORH]
431005
431088
+
Pseudo
GTA
[ENA]
¡û
>W132000043
ANFS01000011
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
2955
3038
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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