This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113750 (130 seq.)
>W1710857635
LMAK01000079
Bacteroidota
Formosa algae [LMAK]
16480
16566
+
Ser
GCT
[ENA]
¡û
>W1711069212
LSFM01000022
Bacteroidota
Polaribacter vadi [LSFM]
337270
337356
+
Ser
GCT
[ENA]
¡û
>W1712097598
NIDK01000002
Bacteroidota
Polaribacter haliotis [NIDK]
236457
236371
-
Ser
GCT
[ENA]
¡û
>W1712097636
NIDL01000001
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
556979
556893
-
Ser
GCT
[ENA]
¡û
>C171059718
CP017260
Bacteroidota
Formosa sp. Hel1_33_131 [CP017260]
2276333
2276419
+
Ser
GCT
-
¡û
>C171063257
CP017477
Bacteroidota
Polaribacter vadi LPB0003 [CP017477]
1034904
1034818
-
Ser
GCT
-
¡û
>C171098451
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
261447
261533
+
Ser
GCT
-
¡û
>W131175279
ARJD01000044
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
93209
93295
+
Ser
GCT
[ENA]
¡û
>WENV180101563
OAOV01010528
[OAOV] marine metagenome; ENVO:00002010
176
92
-
Ser
GCT
[ENA]
¢þ
>WENV180356582
OBNL01000016
[OBNL] marine metagenome; ENVO:00002010
1160
1076
-
Ser
GCT
[ENA]
¢þ
>WENV180383506
OBOU01129399
[OBOU] marine metagenome; ENV:00002010
3
87
+
Ser
GCT
[ENA]
¢þ
>WENV180383691
OBOV01007296
[OBOV] marine metagenome; ENV:00002010
349
265
-
Ser
GCT
[ENA]
¢þ
>WENV180384014
OBOV01146106
[OBOV] marine metagenome; ENV:00002010
15
99
+
Ser
GCT
[ENA]
¢þ
>WENV180396454
OBPV01005241
[OBPV] marine metagenome; ENVO:00002010
375
459
+
Ser
GCT
[ENA]
¢þ
>WENV180397680
OBPZ01000103
[OBPZ] marine metagenome; ENVO:00002010
1721
1805
+
Ser
GCT
[ENA]
¢þ
>WENV180399737
OBQO01023915
[OBQO] marine metagenome; ENVO:00002010
89
173
+
Ser
GCT
[ENA]
¢þ
>WENV180650349
OCSY01011183
[OCSY] marine metagenome; 30 L Plastic container
427
511
+
Ser
GCT
[ENA]
¢þ
>WENV181325192
OFLI01014868
[OFLI] seawater metagenome; seawater
438
354
-
Ser
GCT
[ENA]
¢þ
>WENV181325544
OFLJ01004278
[OFLJ] seawater metagenome; seawater
1232
1316
+
Ser
GCT
[ENA]
¢þ
>WENV181325977
OFLJ01060460
[OFLJ] seawater metagenome; seawater
395
311
-
Ser
GCT
[ENA]
¢þ
>WENV181391617
OFRT01029021
[OFRT] seawater metagenome; seawater
482
398
-
Ser
GCT
[ENA]
¢þ
>WENV181392906
OFRX01015552
[OFRX] seawater metagenome; seawater
428
512
+
Ser
GCT
[ENA]
¢þ
>W141231617
BAUG01000014
Bacteroidota
Tenacibaculum maritimum NBRC 15946 [BAUG]
24846
24760
-
Ser
GCT
[ENA]
¡û
>WENV182541020
OJAQ01002988
[OJAQ] seawater metagenome; Sea water
869
785
-
Ser
GCT
[ENA]
¢þ
>WENV182541436
OJAT01010109
[OJAT] seawater metagenome; Sea water
220
136
-
Ser
GCT
[ENA]
¢þ
>WENV182545024
OJBL01003472
[OJBL] seawater metagenome; Sea water
393
477
+
Ser
GCT
[ENA]
¢þ
>WENV182547375
OJBS01001420
[OJBS] seawater metagenome; Sea water
1933
2017
+
Ser
GCT
[ENA]
¢þ
>WENV182547688
OJBT01000601
[OJBT] seawater metagenome; Sea water
6901
6985
+
Ser
GCT
[ENA]
¢þ
>WENV182548523
OJBW01001363
[OJBW] seawater metagenome; Sea water
1328
1244
-
Ser
GCT
[ENA]
¢þ
>WENV182552047
OJCJ01004214
[OJCJ] seawater metagenome; Sea water
403
319
-
Ser
GCT
[ENA]
¢þ
>WENV182553542
OJCR01010287
[OJCR] seawater metagenome; Sea water
1213
1297
+
Ser
GCT
[ENA]
¢þ
>WENV182554817
OJCW01015802
[OJCW] seawater metagenome; Sea water
360
444
+
Ser
GCT
[ENA]
¢þ
>WENV182555127
OJCY01003209
[OJCY] seawater metagenome; Sea water
2071
1987
-
Ser
GCT
[ENA]
¢þ
>WENV182556583
OJDG01020643
[OJDG] seawater metagenome; Sea water
756
840
+
Ser
GCT
[ENA]
¢þ
>WENV182557759
OJDK01007958
[OJDK] seawater metagenome; Sea water
190
274
+
Ser
GCT
[ENA]
¢þ
>WENV182558267
OJDL01028033
[OJDL] seawater metagenome; Sea water
675
591
-
Ser
GCT
[ENA]
¢þ
>WENV182558326
OJDM01000082
[OJDM] seawater metagenome; Sea water
3358
3442
+
Ser
GCT
[ENA]
¢þ
>WENV182558896
OJDN01012125
[OJDN] seawater metagenome; Sea water
1091
1175
+
Ser
GCT
[ENA]
¢þ
>WENV182559907
OJDQ01019196
[OJDQ] seawater metagenome; Sea water
346
262
-
Ser
GCT
[ENA]
¢þ
>WENV182560365
OJDU01000078
[OJDU] seawater metagenome; Sea water
155
71
-
Ser
GCT
[ENA]
¢þ
>WENV182561732
OJDX01001297
[OJDX] seawater metagenome; Sea water
2081
2165
+
Ser
GCT
[ENA]
¢þ
>WENV182562021
OJDY01001177
[OJDY] seawater metagenome; Sea water
3527
3611
+
Ser
GCT
[ENA]
¢þ
>WENV182562760
OJEA01001360
[OJEA] seawater metagenome; Sea water
321
237
-
Ser
GCT
[ENA]
¢þ
>WENV182563186
OJEB01001662
[OJEB] seawater metagenome; Sea water
2102
2186
+
Ser
GCT
[ENA]
¢þ
>WENV182564248
OJEE01000950
[OJEE] seawater metagenome; Sea water
1381
1465
+
Ser
GCT
[ENA]
¢þ
>WENV182564408
OJEF01000051
[OJEF] seawater metagenome; Sea water
1060
976
-
Ser
GCT
[ENA]
¢þ
>WENV182564789
OJEF01007011
[OJEF] seawater metagenome; Sea water
2189
2273
+
Ser
GCT
[ENA]
¢þ
>WENV182565206
OJEH01000404
[OJEH] seawater metagenome; Sea water
5415
5331
-
Ser
GCT
[ENA]
¢þ
>WENV182567410
OJEO01000645
[OJEO] seawater metagenome; Sea water
11012
11096
+
Ser
GCT
[ENA]
¢þ
>WENV182567827
OJEP01000509
[OJEP] seawater metagenome; Sea water
6064
6148
+
Ser
GCT
[ENA]
¢þ
>WENV182569094
OJEY01000518
[OJEY] seawater metagenome; Sea water
1312
1228
-
Ser
GCT
[ENA]
¢þ
>WENV182569724
OJFB01000116
[OJFB] seawater metagenome; Sea water
4598
4514
-
Ser
GCT
[ENA]
¢þ
>WENV182570448
OJFC01007791
[OJFC] seawater metagenome; Sea water
550
466
-
Ser
GCT
[ENA]
¢þ
>WENV182571930
OJFK01032722
[OJFK] seawater metagenome; Sea water
161
77
-
Ser
GCT
[ENA]
¢þ
>WENV182574396
OJFR01010830
[OJFR] seawater metagenome; Sea water
1459
1543
+
Ser
GCT
[ENA]
¢þ
>WENV182575014
OJFS01020502
[OJFS] seawater metagenome; Sea water
463
547
+
Ser
GCT
[ENA]
¢þ
>WENV182575799
OJFW01002145
[OJFW] seawater metagenome; Sea water
1080
996
-
Ser
GCT
[ENA]
¢þ
>WENV182576094
OJFX01003030
[OJFX] seawater metagenome; Sea water
3196
3280
+
Ser
GCT
[ENA]
¢þ
>WENV182576687
OJFY01001632
[OJFY] seawater metagenome; Sea water
1374
1290
-
Ser
GCT
[ENA]
¢þ
>WENV182577982
OJGM01000247
[OJGM] seawater metagenome; Sea water
4687
4771
+
Ser
GCT
[ENA]
¢þ
>WENV182578655
OJGP01000020
[OJGP] seawater metagenome; Sea water
1985
1901
-
Ser
GCT
[ENA]
¢þ
>WENV182580062
OJGU01002282
[OJGU] seawater metagenome; Sea water
4291
4375
+
Ser
GCT
[ENA]
¢þ
>WENV182581659
OJGX01031598
[OJGX] seawater metagenome; Sea water
348
264
-
Ser
GCT
[ENA]
¢þ
>WENV182582320
OJHA01005573
[OJHA] seawater metagenome; Sea water
164
80
-
Ser
GCT
[ENA]
¢þ
>WENV182582659
OJHB01008237
[OJHB] seawater metagenome; Sea water
349
265
-
Ser
GCT
[ENA]
¢þ
>WENV182583144
OJHD01000468
[OJHD] seawater metagenome; Sea water
2085
2169
+
Ser
GCT
[ENA]
¢þ
>WENV182583742
OJHE01001399
[OJHE] seawater metagenome; Sea water
776
692
-
Ser
GCT
[ENA]
¢þ
>WENV182585379
OJHH01014787
[OJHH] seawater metagenome; Sea water
177
93
-
Ser
GCT
[ENA]
¢þ
>WENV182587733
OJHN01003294
[OJHN] seawater metagenome; Sea water
855
771
-
Ser
GCT
[ENA]
¢þ
>WENV182588957
OJHY01005095
[OJHY] seawater metagenome; Sea water
831
747
-
Ser
GCT
[ENA]
¢þ
>WENV182590895
OJIK01003190
[OJIK] seawater metagenome; Sea water
1233
1149
-
Ser
GCT
[ENA]
¢þ
>WENV182592649
OJIR01006945
[OJIR] seawater metagenome; Sea water
366
282
-
Ser
GCT
[ENA]
¢þ
>WENV182594174
OJIV01001103
[OJIV] seawater metagenome; Sea water
164
80
-
Ser
GCT
[ENA]
¢þ
>WENV183054594
OLGU01000272
[OLGU] seawater metagenome; Sea water
12080
12164
+
Ser
GCT
[ENA]
¢þ
>WENV183055045
OLGW01001856
[OLGW] seawater metagenome; Sea water
1265
1349
+
Ser
GCT
[ENA]
¢þ
>WENV183056106
OLHI01000091
[OLHI] seawater metagenome; Sea water
24738
24822
+
Ser
GCT
[ENA]
¢þ
>WENV183058096
OLHN01003637
[OLHN] seawater metagenome; Sea water
1590
1674
+
Ser
GCT
[ENA]
¢þ
>WENV183058930
OLHR01035710
[OLHR] seawater metagenome; Sea water
437
521
+
Ser
GCT
[ENA]
¢þ
>WENV183059306
OLHU01000536
[OLHU] seawater metagenome; Sea water
6089
6173
+
Ser
GCT
[ENA]
¢þ
>WENV183060379
OLHX01006817
[OLHX] seawater metagenome; Sea water
676
592
-
Ser
GCT
[ENA]
¢þ
>WENV183061291
OLHZ01002933
[OLHZ] seawater metagenome; Sea water
1062
978
-
Ser
GCT
[ENA]
¢þ
>WENV183062396
OLID01007406
[OLID] seawater metagenome; Sea water
1681
1765
+
Ser
GCT
[ENA]
¢þ
>WENV183064781
OLII01000605
[OLII] seawater metagenome; Sea water
12604
12688
+
Ser
GCT
[ENA]
¢þ
>WENV183615476
OOEB01023438
[OOEB] marine metagenome; sea ice
218
302
+
Ser
GCT
[ENA]
¢þ
>WENV183618640
OOFO01015093
[OOFO] marine metagenome; seawater
438
354
-
Ser
GCT
[ENA]
¢þ
>WENV183619116
OOFP01028776
[OOFP] marine metagenome; seawater
482
398
-
Ser
GCT
[ENA]
¢þ
>WENV183619406
OOFQ01004269
[OOFQ] marine metagenome; seawater
1232
1316
+
Ser
GCT
[ENA]
¢þ
>WENV183619851
OOFQ01063210
[OOFQ] marine metagenome; seawater
395
311
-
Ser
GCT
[ENA]
¢þ
>WENV183628077
OOGM01010872
[OOGM] marine metagenome; sea ice
441
525
+
Ser
GCT
[ENA]
¢þ
>WENV183629269
OOGP01015634
[OOGP] marine metagenome; seawater
428
512
+
Ser
GCT
[ENA]
¢þ
>WENV170538052
CEWR01049374
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
165
79
-
Ser
GCT
[ENA]
¢þ
>WENV170569167
FLMP01139615
[FLMP] seawater metagenome; seawater
94
180
+
Ser
GCT
[ENA]
¢þ
>WENV170569797
FLMP01306271
[FLMP] seawater metagenome; seawater
451
365
-
Ser
GCT
[ENA]
¢þ
>WENV170572656
FLOH01001126
[FLOH] marine metagenome; water
7157
7071
-
Ser
GCT
[ENA]
¢þ
>WENV170624564
FUWD013183470
[FUWD] metagenome; unknown
3335
3421
+
Ser
GCT
[ENA]
¢þ
>WENV170624567
FUWD013183471
[FUWD] metagenome; unknown
22
108
+
Ser
GCT
[ENA]
¢þ
>WENV170781844
MAAC01002248
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
510
424
-
Ser
GCT
[ENA]
¢þ
>WENV170781848
MAAC01002304
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
8233
8319
+
Ser
GCT
[ENA]
¢þ
>WENV170781885
MAAC01003305
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
2842
2928
+
Ser
GCT
[ENA]
¢þ
>WENV170783286
MAAC01015604
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
8187
8273
+
Ser
GCT
[ENA]
¢þ
>WENV170823877
MDSY01065905
[MDSY] marine metagenome; seawater
32302
32388
+
Ser
GCT
[ENA]
¢þ
>WENV170825034
MDSY01086629
[MDSY] marine metagenome; seawater
96
10
-
Ser
GCT
[ENA]
¢þ
>WENV170951175
MEHZ011540112
[MEHZ] marine metagenome; marine surface water
412
328
-
Ser
GCT
[ENA]
¢þ
>WENV170951986
MEHZ011579198
[MEHZ] marine metagenome; marine surface water
375
289
-
Ser
GCT
[ENA]
¢þ
>WENV170952051
MEHZ011581839
[MEHZ] marine metagenome; marine surface water
86
2
-
Ser
GCT
[ENA]
¢þ
>C181219858
LT634361
Bacteroidota
Tenacibaculum maritimum NCIMB 2154 [LT634361]
2350943
2350859
-
Ser
GCT
-
¡û
>C191018104
CP020822
Bacteroidota
Tenacibaculum maritimum TM-KORJJ [CP020822]
2011472
2011388
-
Ser
GCT
-
¡û
>W141563350
JHZY01000002
Bacteroidota
Leeuwenhoekiella sp. MAR_2009_132 Hel_I_48 [JHZY]
1898658
1898572
-
Ser
GCT
[ENA]
¡û
>W141563407
JHZZ01000001
Bacteroidota
Polaribacter sp. Hel_I_88 [JHZZ]
2880589
2880675
+
Ser
GCT
[ENA]
¡û
>W1910547419
FZNT01000001
Bacteroidota
Lutibacter agarilyticus DSM 29150 [FZNT]
55362
55446
+
Ser
GCT
[ENA]
¡û
>W1910547677
FZNY01000010
Bacteroidota
Dokdonia pacifica DSM 25597 [FZNY]
133534
133618
+
Ser
GCT
[ENA]
¡û
>W1910758275
MLJY01000020
Bacteroidota
Formosa algae KMM 8021 [MLJY]
68344
68260
-
Ser
GCT
[ENA]
¡û
>W1911708473
QOVM01000007
Bacteroidota
Leeuwenhoekiella aequorea LMG 22550 [QOVM]
225798
225714
-
Ser
GCT
[ENA]
¡û
>W1810385499
PXOQ01000009
Bacteroidota
Aurantibacter aestuarii KCTC 32269 [PXOQ]
377228
377144
-
Ser
GCT
[ENA]
¡û
>W1810672055
QJTD01000002
Bacteroidota
Winogradskyella epiphytica CECT 7945 [QJTD]
396967
397051
+
Ser
GCT
[ENA]
¡û
>W1810684802
QKYV01000002
Bacteroidota
Mesonia algae DSM 15361 [QKYV]
175427
175343
-
Ser
GCT
[ENA]
¡û
>W1810724869
QOCC01000013
Bacteroidota
Tenacibaculum sp. E3R01 [QOCC]
43408
43492
+
Ser
GCT
[ENA]
¡û
>C151018428
CP007202
Bacteroidota
Siansivirga zeaxanthinifaciens CC-SAMT-1 [CP007202]
2841094
2841008
-
Ser
GCT
[Ensembl]
¡û
>WENV000364
AACY020010953
Marine microbial communities from Global Ocean Sampling (GOS)
1521
1607
+
Ser
GCT
[ENA]
>WENV046518
AACY022604655
Marine microbial communities from Global Ocean Sampling (GOS)
732
646
-
Ser
GCT
[ENA]
>C161105070
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
1071862
1071948
+
Ser
GCT
[Ensembl]
¡û
>W1610082055
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
841878
841792
-
Ser
GCT
[ENA]
¡û
>W1610720016
LMAK01000079
Bacteroidota
Formosa algae [LMAK]
16480
16566
+
Ser
GCT
[ENA]
¡û
>W1610909740
LSFM01000022
Bacteroidota
Polaribacter vadi [LSFM]
337270
337356
+
Ser
GCT
[ENA]
¡û
>WENV078196
AAFZ01006454
Fossil microbial community from Whale Fall (Santa Cruz Basin)
677
763
+
Ser
GCT
[ENA]
>WENV078471
AAGA01020349
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
224
138
-
Ser
GCT
[ENA]
>W1710080828
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
841878
841792
-
Ser
GCT
[ENA]
¡û
>W1710534973
FNSF01000002
Bacteroidota
Tenacibaculum sp. MAR_2009_124 [FNSF]
685260
685346
+
Ser
GCT
[ENA]
¡û
>W1710537852
FNUB01000005
Bacteroidota
Tenacibaculum sp. MAR_2010_89 [FNUB]
3171704
3171618
-
Ser
GCT
[ENA]
¡û
>W1710587025
FQXQ01000008
Bacteroidota
Wenyingzhuangia marina [FQXQ]
48435
48349
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK