This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114000 (67 seq.)
>W1711048725
LRPX01000077
Fusobacteriota
Fusobacterium equinum [LRPX]
41
124
+
Leu
TAG
[ENA]
¡û
>W1711138552
LVDY01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
5260
5177
-
Leu
TAG
[ENA]
¡û
>W1711138602
LVDZ01000025
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
4987
4904
-
Leu
TAG
[ENA]
¡û
>W1711138648
LVEA01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
5479
5396
-
Leu
TAG
[ENA]
¡û
>W1711139056
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
5939
6022
+
Leu
TAG
[ENA]
¡û
>W1711139123
LVER01000050
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
4350
4267
-
Leu
TAG
[ENA]
¡û
>W1711139156
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
5939
6022
+
Leu
TAG
[ENA]
¡û
>W1711139219
LVET01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1711139262
LVEU01000016
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1711139315
LVEV01000023
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
4609
4526
-
Leu
TAG
[ENA]
¡û
>W1711139347
LVEW01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
4609
4526
-
Leu
TAG
[ENA]
¡û
>W1711139387
LVEX01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1711139427
LVEY01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1711139470
LVEZ01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
4608
4525
-
Leu
TAG
[ENA]
¡û
>W1711139515
LVFA01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
4609
4526
-
Leu
TAG
[ENA]
¡û
>W1711139545
LVFB01000016
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1711139589
LVFC01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
61
144
+
Leu
TAG
[ENA]
¡û
>W1711139643
LVFD01000015
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
5479
5396
-
Leu
TAG
[ENA]
¡û
>W1711139686
LVFE01000020
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
5486
5403
-
Leu
TAG
[ENA]
¡û
>W141054935
AOJP01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
48977
48894
-
Leu
TAG
[ENA]
¡û
>WENV182478388
OIQN01000727
[OIQN] human gut metagenome; human gut
140
57
-
Leu
TAG
[ENA]
¢þ
>WENV182499760
OITV01001183
[OITV] human gut metagenome; human gut
553
470
-
Leu
TAG
[ENA]
¢þ
>W141273951
JAAC01000108
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
45814
45897
+
Leu
TAG
[ENA]
¡û
>W141273980
JAAD01000082
Fusobacteriota
Fusobacterium necrophorum DJ-1 [JAAD]
4591
4508
-
Leu
TAG
[ENA]
¡û
>W141274010
JAAE01000074
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
4034
3951
-
Leu
TAG
[ENA]
¡û
>W141274046
JAAF01000192
Fusobacteriota
Fusobacterium necrophorum DAB [JAAF]
48
131
+
Leu
TAG
[ENA]
¡û
>W141274066
JAAG01000110
Fusobacteriota
Fusobacterium necrophorum BFTR-2 [JAAG]
36
119
+
Leu
TAG
[ENA]
¡û
>W141274105
JAAH01000172
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
5246
5163
-
Leu
TAG
[ENA]
¡û
>WENV183017591
OLEW01000743
[OLEW] human gut metagenome; human gut
62
145
+
Leu
TAG
[ENA]
¢þ
>WENV183115792
OLNQ01020339
[OLNQ] human gut metagenome; faeces
1287
1370
+
Leu
TAG
[ENA]
¢þ
>C181161120
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
253064
252981
-
Leu
TAG
-
¡û
>C181161153
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
339228
339311
+
Leu
TAG
-
¡û
>C191015341
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
31826
31909
+
Leu
TAG
-
¡û
>C191016013
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
33654
33737
+
Leu
TAG
-
¡û
>C191113372
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1133053
1132970
-
Leu
TAG
-
¡û
>C191132392
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
423593
423676
+
Leu
TAG
-
¡û
>W141559457
JHWT01000015
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
46668
46751
+
Leu
TAG
[ENA]
¡û
>W09118633
ACDD01000064
Fusobacteriota
Fusobacterium gonidiaformans 3_1_5R [ACDD]
4032
3949
-
Leu
TAG
[ENA]
¡û
>W09118727
ACDG01000024
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
5337
5420
+
Leu
TAG
[ENA]
¡û
>W09120615
ACET01000020
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [ACET]
37982
38065
+
Leu
TAG
[ENA]
¡û
>W1911160160
NPNE01000027
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_LM [NPNE]
4986
4903
-
Leu
TAG
[ENA]
¡û
>W1911160198
NPNF01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_CP [NPNF]
4986
4903
-
Leu
TAG
[ENA]
¡û
>W1610026573
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
47935
47852
-
Leu
TAG
[ENA]
¡û
>W121001912
ADLZ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
48368
48285
-
Leu
TAG
[ENA]
¡û
>W121066986
AJSY01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
4555
4472
-
Leu
TAG
[ENA]
¡û
>W121112303
ALKK01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme Fnf 1007 [ALKK]
4023
4106
+
Leu
TAG
[ENA]
¡û
>W1610889854
LRPX01000077
Fusobacteriota
Fusobacterium equinum [LRPX]
41
124
+
Leu
TAG
[ENA]
¡û
>W1610949592
LVDY01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
5260
5177
-
Leu
TAG
[ENA]
¡û
>W1610949642
LVDZ01000025
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
4987
4904
-
Leu
TAG
[ENA]
¡û
>W1610949688
LVEA01000040
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
5479
5396
-
Leu
TAG
[ENA]
¡û
>W1610950064
LVEQ01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
5939
6022
+
Leu
TAG
[ENA]
¡û
>W1610950131
LVER01000050
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
4350
4267
-
Leu
TAG
[ENA]
¡û
>W1610950164
LVES01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
5939
6022
+
Leu
TAG
[ENA]
¡û
>W1610950227
LVET01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1610950270
LVEU01000016
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1610950323
LVEV01000023
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
4609
4526
-
Leu
TAG
[ENA]
¡û
>W1610950355
LVEW01000017
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
4609
4526
-
Leu
TAG
[ENA]
¡û
>W1610950395
LVEX01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1610950435
LVEY01000026
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1610950478
LVEZ01000013
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
4608
4525
-
Leu
TAG
[ENA]
¡û
>W1610950523
LVFA01000018
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
4609
4526
-
Leu
TAG
[ENA]
¡û
>W1610950553
LVFB01000016
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
4966
4883
-
Leu
TAG
[ENA]
¡û
>W1610950597
LVFC01000014
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
61
144
+
Leu
TAG
[ENA]
¡û
>W1610950651
LVFD01000015
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
5479
5396
-
Leu
TAG
[ENA]
¡û
>W1610950694
LVFE01000020
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
5486
5403
-
Leu
TAG
[ENA]
¡û
>W1710022622
AUZI01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
47935
47852
-
Leu
TAG
[ENA]
¡û
>W1710510368
FMXX01000016
Fusobacteriota
Fusobacterium necrophorum [FMXX]
5719
5636
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK