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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114010 (108 seq.)
>W1710877104
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76492
76575
+
Tyr
GTA
[ENA]
¡û
>W1710877149
LMPV01000011
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
101187
101104
-
Tyr
GTA
[ENA]
¡û
>W1710909380
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1109
1192
+
Tyr
GTA
[ENA]
¡û
>W1710909394
LNQL01000003
Bacillota
Exiguobacterium enclense [LNQL]
628
711
+
Tyr
GTA
[ENA]
¡û
>W1711116991
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774462
774379
-
Tyr
GTA
[ENA]
¡û
>W1711117005
LUCU01000033
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
624
707
+
Tyr
GTA
[ENA]
¡û
>W1711166802
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982972
1982889
-
Tyr
GTA
[ENA]
¡û
>W1711166826
LVVL01000017
Bacillota
Exiguobacterium undae [LVVL]
344
427
+
Tyr
GTA
[ENA]
¡û
>W131202729
ASXD01000015
Bacillota
Exiguobacterium sp. S17 [ASXD]
47798
47715
-
Tyr
GTA
[ENA]
¡û
>W1711507269
MKXO01000001
Bacillota
Exiguobacterium aurantiacum [MKXO]
1157906
1157823
-
Tyr
GTA
[ENA]
¡û
>W1711507298
MKXO01000010
Bacillota
Exiguobacterium aurantiacum [MKXO]
51671
51588
-
Tyr
GTA
[ENA]
¡û
>W1711589644
MOEL01000005
Bacillota
Exiguobacterium sp. AT1b [MOEL]
856
939
+
Tyr
GTA
[ENA]
¡û
>W1711589671
MOEL01000015
Bacillota
Exiguobacterium sp. AT1b [MOEL]
641
724
+
Tyr
GTA
[ENA]
¡û
>W1711603275
MOLV01000032
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
486
569
+
Tyr
GTA
[ENA]
¡û
>W1711603296
MOLV01000045
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
736
653
-
Tyr
GTA
[ENA]
¡û
>W1711632638
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
719
802
+
Tyr
GTA
[ENA]
¡û
>W1711632674
MPSZ01000014
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
34772
34689
-
Tyr
GTA
[ENA]
¡û
>W1711676354
MRSV01000001
Bacillota
Exiguobacterium profundum [MRSV]
570183
570266
+
Tyr
GTA
[ENA]
¡û
>W1711676362
MRSV01000001
Bacillota
Exiguobacterium profundum [MRSV]
2620858
2620775
-
Tyr
GTA
[ENA]
¡û
>W1711713104
MTCT01000008
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
1934
2017
+
Tyr
GTA
[ENA]
¡û
>W1711713121
MTCT01000009
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
503284
503201
-
Tyr
GTA
[ENA]
¡û
>W1712017226
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
599
682
+
Tyr
GTA
[ENA]
¡û
>W1712017316
NESR01000023
Bacillota
Kurthia gibsonii [NESR]
312
395
+
Tyr
GTA
[ENA]
¡û
>C171040542
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
579343
579426
+
Tyr
GTA
-
¡û
>C171040554
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162589
1162672
+
Tyr
GTA
-
¡û
>C171072123
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
157808
157891
+
Tyr
GTA
-
¡û
>C171072135
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
723941
724024
+
Tyr
GTA
-
¡û
>W131202758
ASXD01000105
Bacillota
Exiguobacterium sp. S17 [ASXD]
747
830
+
Tyr
GTA
[ENA]
¡û
>W131205110
ATCL01000011
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
356
439
+
Tyr
GTA
[ENA]
¡û
>W131241563
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928453
928370
-
Tyr
GTA
[ENA]
¡û
>W131241580
BARY01000016
Bacillota
Exiguobacterium sp. OS-77 [BARY]
40391
40308
-
Tyr
GTA
[ENA]
¡û
>w003656
AADW02000013
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
57707
57622
-
Tyr
GTA
[ENA]
¡û
>w003636
AADW02000003
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
279705
279620
-
Tyr
GTA
[ENA]
¡û
>W08009400
ABPF01000005
Bacillota
Exiguobacterium sp. AT1b [ABPF]
273
356
+
Tyr
GTA
[ENA]
¡û
>W08009421
ABPF01000072
Bacillota
Exiguobacterium sp. AT1b [ABPF]
2744
2664
-
Tyr
GTA
[ENA]
¡û
>C08004796
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
152507
152590
+
Tyr
GTA
[Ensembl]
¡û
>C08004808
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
704535
704618
+
Tyr
GTA
[Ensembl]
¡û
>WENV170022532
BCQK01018547
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
399
482
+
Tyr
GTA
[ENA]
¢þ
>W141484754
JFYW01000001
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
1687614
1687531
-
Tyr
GTA
[ENA]
¡û
>W141484788
JFYW01000009
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
283442
283359
-
Tyr
GTA
[ENA]
¡û
>C191181489
CP040676
Bacillota
Exiguobacterium mexicanum A-EM [CP040676]
73541
73624
+
Tyr
GTA
-
¡û
>C191181515
CP040676
Bacillota
Exiguobacterium mexicanum A-EM [CP040676]
2073620
2073537
-
Tyr
GTA
-
¡û
>W141563069
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
2090335
2090252
-
Tyr
GTA
[ENA]
¡û
>W141563083
JHZS01000003
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
327329
327246
-
Tyr
GTA
[ENA]
¡û
>W141563127
JHZT01000003
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
60715
60798
+
Tyr
GTA
[ENA]
¡û
>W141563142
JHZT01000003
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
2042700
2042617
-
Tyr
GTA
[ENA]
¡û
>W141563190
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
1583271
1583188
-
Tyr
GTA
[ENA]
¡û
>W141563202
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
998953
998870
-
Tyr
GTA
[ENA]
¡û
>W141563249
JHZV01000005
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1001384
1001301
-
Tyr
GTA
[ENA]
¡û
>W141563262
JHZV01000006
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
584770
584687
-
Tyr
GTA
[ENA]
¡û
>W141620176
JJMW01000029
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
96815
96732
-
Tyr
GTA
[ENA]
¡û
>W141620186
JJMW01000033
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
867
950
+
Tyr
GTA
[ENA]
¡û
>W141701516
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1558377
1558460
+
Tyr
GTA
[ENA]
¡û
>W141701544
JMKS01000005
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
239353
239436
+
Tyr
GTA
[ENA]
¡û
>W141726021
JNAA01000009
Bacillota
Exiguobacterium sp. AB2 [JNAA]
547
630
+
Tyr
GTA
[ENA]
¡û
>W141726055
JNAA01000089
Bacillota
Exiguobacterium sp. AB2 [JNAA]
756
839
+
Tyr
GTA
[ENA]
¡û
>W141730781
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
107436
107519
+
Tyr
GTA
[ENA]
¡û
>W141730830
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2216823
2216740
-
Tyr
GTA
[ENA]
¡û
>W141730863
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
627440
627523
+
Tyr
GTA
[ENA]
¡û
>W141730879
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
2697190
2697107
-
Tyr
GTA
[ENA]
¡û
>W141730915
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
282998
283081
+
Tyr
GTA
[ENA]
¡û
>W141730955
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2871835
2871916
+
Tyr
GTA
[ENA]
¡û
>W141731005
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1718083
1718166
+
Tyr
GTA
[ENA]
¡û
>W141731017
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2287347
2287430
+
Tyr
GTA
[ENA]
¡û
>W141807047
JPOD01000001
Bacillota
Exiguobacterium sp. NG55 [JPOD]
225699
225782
+
Tyr
GTA
[ENA]
¡û
>W141807078
JPOD01000003
Bacillota
Exiguobacterium sp. NG55 [JPOD]
117788
117871
+
Tyr
GTA
[ENA]
¡û
>C141009926
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
119104
119187
+
Tyr
GTA
[Ensembl]
¡û
>C141009938
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
677813
677896
+
Tyr
GTA
[Ensembl]
¡û
>C09106153
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2381046
2381129
+
Tyr
GTA
[Ensembl]
¡û
>C09106187
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
1549358
1549275
-
Tyr
GTA
[Ensembl]
¡û
>W1911770656
QXJB01000001
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
571
654
+
Tyr
GTA
[ENA]
¡û
>W1911770687
QXJB01000006
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
164179
164096
-
Tyr
GTA
[ENA]
¡û
>W1810760522
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
1893052
1892969
-
Tyr
GTA
[ENA]
¡û
>W1810760550
QPKF01000005
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
138591
138508
-
Tyr
GTA
[ENA]
¡û
>W1810823255
QSGS01000007
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
151191
151109
-
Tyr
GTA
[ENA]
¡û
>W1511325253
JQGI01000001
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
2106890
2106807
-
Tyr
GTA
[ENA]
¡û
>W1511325286
JQGI01000013
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
603
686
+
Tyr
GTA
[ENA]
¡û
>W1511403351
JTLB01000007
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
40597
40514
-
Tyr
GTA
[ENA]
¡û
>W1511403382
JTLB01000040
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
187
270
+
Tyr
GTA
[ENA]
¡û
>W1511638502
LDNY01000001
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
2092410
2092327
-
Tyr
GTA
[ENA]
¡û
>W1511686063
LFQN01000002
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
306
389
+
Tyr
GTA
[ENA]
¡û
>W1511686076
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
41011
40928
-
Tyr
GTA
[ENA]
¡û
>W1511699978
LGIW01000014
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
93
176
+
Tyr
GTA
[ENA]
¡û
>W1511699987
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
551
634
+
Tyr
GTA
[ENA]
¡û
>C131001812
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
152451
152534
+
Tyr
GTA
[Ensembl]
¡û
>C131001821
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
662882
662965
+
Tyr
GTA
[Ensembl]
¡û
>W1610521226
JMEH01000003
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
402103
402020
-
Tyr
GTA
[ENA]
¡û
>W1610521256
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1045
1128
+
Tyr
GTA
[ENA]
¡û
>W1610589601
LDQV01000015
Bacillota
Exiguobacterium indicum [LDQV]
429
512
+
Tyr
GTA
[ENA]
¡û
>W1610589628
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
806
889
+
Tyr
GTA
[ENA]
¡û
>W1610589659
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
593
676
+
Tyr
GTA
[ENA]
¡û
>W1610589679
LDQW01000025
Bacillota
Exiguobacterium indicum [LDQW]
48140
48057
-
Tyr
GTA
[ENA]
¡û
>W1610739450
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76492
76575
+
Tyr
GTA
[ENA]
¡û
>W1610739495
LMPV01000011
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
101187
101104
-
Tyr
GTA
[ENA]
¡û
>W1610767739
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1109
1192
+
Tyr
GTA
[ENA]
¡û
>W1610767753
LNQL01000003
Bacillota
Exiguobacterium enclense [LNQL]
628
711
+
Tyr
GTA
[ENA]
¡û
>W1610928350
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774462
774379
-
Tyr
GTA
[ENA]
¡û
>W1610928364
LUCU01000033
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
624
707
+
Tyr
GTA
[ENA]
¡û
>W1610977342
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982972
1982889
-
Tyr
GTA
[ENA]
¡û
>W1610977366
LVVL01000017
Bacillota
Exiguobacterium undae [LVVL]
344
427
+
Tyr
GTA
[ENA]
¡û
>W1710511215
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
1109
1192
+
Tyr
GTA
[ENA]
¡û
>W1710511229
FMYN01000003
Bacillota
Exiguobacterium enclense [FMYN]
628
711
+
Tyr
GTA
[ENA]
¡û
>W1710619706
JMEH01000003
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
402103
402020
-
Tyr
GTA
[ENA]
¡û
>W1710619736
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1045
1128
+
Tyr
GTA
[ENA]
¡û
>W1710708881
LDQV01000015
Bacillota
Exiguobacterium indicum [LDQV]
429
512
+
Tyr
GTA
[ENA]
¡û
>W1710708908
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
806
889
+
Tyr
GTA
[ENA]
¡û
>W1710708939
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
593
676
+
Tyr
GTA
[ENA]
¡û
>W1710708959
LDQW01000025
Bacillota
Exiguobacterium indicum [LDQW]
48140
48057
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK