This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114284 (64 seq.)
>C171131125
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
1861961
1862044
+
Leu
CAA
-
¡û
>W131252505
CBML010000006
Bacillota
Clostridium chauvoei JF4335 [CBML]
1548179
1548262
+
Leu
CAA
[ENA]
¡û
>WENV180170090
OAVU01001115
[OAVU] human gut metagenome; faeces
2467
2550
+
Leu
CAA
[ENA]
¢þ
>WENV180180662
OAWL01000307
[OAWL] human gut metagenome; faeces
2073
2156
+
Leu
CAA
[ENA]
¢þ
>WENV180190782
OAXA01003140
[OAXA] human gut metagenome; faeces
932
849
-
Leu
CAA
[ENA]
¢þ
>WENV180326713
OBKS01149131
[OBKS] human gut metagenome; human gut
144
227
+
Leu
CAA
[ENA]
¢þ
>WENV180410140
OBUW01002769
[OBUW] human gut metagenome; faeces
298
215
-
Leu
CAA
[ENA]
¢þ
>WENV180415502
OBVE01001189
[OBVE] human gut metagenome; faeces
666
583
-
Leu
CAA
[ENA]
¢þ
>WENV180421892
OBVS01000001
[OBVS] human gut metagenome; faeces
470140
470057
-
Leu
CAA
[ENA]
¢þ
>WENV180456656
OBXR01000608
[OBXR] human gut metagenome; faeces
829
746
-
Leu
CAA
[ENA]
¢þ
>WENV180488964
OBZR01003509
[OBZR] human gut metagenome; faeces
2084
2167
+
Leu
CAA
[ENA]
¢þ
>WENV180606170
OCPT01005381
[OCPT] human gut metagenome; human gut
3968
4051
+
Leu
CAA
[ENA]
¢þ
>WENV180647342
OCSH01081336
[OCSH] human gut metagenome; human gut
440
523
+
Leu
CAA
[ENA]
¢þ
>WENV181551439
OGIN01012966
[OGIN] metagenome; Human gut stool
1155
1238
+
Leu
CAA
[ENA]
¢þ
>WENV181556441
OGIU01028901
[OGIU] metagenome; Human gut stool
466
383
-
Leu
CAA
[ENA]
¢þ
>WENV181558580
OGIX01004933
[OGIX] metagenome; Human gut stool
1275
1192
-
Leu
CAA
[ENA]
¢þ
>WENV181789459
OGRO01018718
[OGRO] human gut metagenome; faeces
433
350
-
Leu
CAA
[ENA]
¢þ
>WENV181793770
OGRR01012426
[OGRR] human gut metagenome; faeces
934
851
-
Leu
CAA
[ENA]
¢þ
>WENV181805251
OGSH01008505
[OGSH] human gut metagenome; fecal sample 5 from infant 6
271
188
-
Leu
CAA
[ENA]
¢þ
>WENV181807831
OGSQ01000321
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
20742
20659
-
Leu
CAA
[ENA]
¢þ
>WENV181809548
OGST01000471
[OGST] human gut metagenome; fecal sample 7 from infant 6
1682
1765
+
Leu
CAA
[ENA]
¢þ
>WENV181814853
OGTH01000649
[OGTH] human gut metagenome; fecal sample 4 from infant 6
526
609
+
Leu
CAA
[ENA]
¢þ
>WENV181817668
OGTN01002814
[OGTN] human gut metagenome; fecal sample 5 from infant 4
537
620
+
Leu
CAA
[ENA]
¢þ
>WENV181819013
OGTU01004062
[OGTU] human gut metagenome; fecal sample 6 from infant 4
537
620
+
Leu
CAA
[ENA]
¢þ
>WENV181875635
OGXC01000013
[OGXC] human gut metagenome; faeces
112947
112864
-
Leu
CAA
[ENA]
¢þ
>WENV182037584
OHDD01004215
[OHDD] human gut metagenome; feces
547
464
-
Leu
CAA
[ENA]
¢þ
>WENV182108977
OHIM01006975
[OHIM] human gut metagenome; feces
1046
1129
+
Leu
CAA
[ENA]
¢þ
>WENV182109126
OHIM01022192
[OHIM] human gut metagenome; feces
368
451
+
Leu
CAA
[ENA]
¢þ
>WENV182133050
OHKF01010056
[OHKF] human gut metagenome; feces
1155
1238
+
Leu
CAA
[ENA]
¢þ
>WENV182159371
OHMA01007680
[OHMA] human gut metagenome; feces
1166
1249
+
Leu
CAA
[ENA]
¢þ
>WENV182405914
OIEX01000013
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
1704
1787
+
Leu
CAA
[ENA]
¢þ
>W141259093
CBYM010000007
Bacillota
Clostridium saudiense JCC [CBYM]
106551
106634
+
Leu
CAA
[ENA]
¡û
>WENV182673462
OJNO01017181
[OJNO] human gut metagenome; human gut
821
904
+
Leu
CAA
[ENA]
¢þ
>WENV182816570
OJZB01000328
[OJZB] human gut metagenome; human gut
3647
3730
+
Leu
CAA
[ENA]
¢þ
>WENV182843498
OKIM01001164
[OKIM] human gut metagenome; human gut
208
125
-
Leu
CAA
[ENA]
¢þ
>WENV182844348
OKIR01002687
[OKIR] human gut metagenome; human gut
2060
2143
+
Leu
CAA
[ENA]
¢þ
>WENV182850909
OKLH01000510
[OKLH] human gut metagenome; human gut
578
495
-
Leu
CAA
[ENA]
¢þ
>WENV182963272
OKWQ01000044
[OKWQ] human gut metagenome; stool
151676
151759
+
Leu
CAA
[ENA]
¢þ
>WENV183079329
OLIX01020724
[OLIX] human gut metagenome; feces
1344
1261
-
Leu
CAA
[ENA]
¢þ
>WENV183097713
OLNE01008689
[OLNE] human gut metagenome; faeces
2140
2057
-
Leu
CAA
[ENA]
¢þ
>WENV183103533
OLNJ01000970
[OLNJ] human gut metagenome; faeces
6504
6421
-
Leu
CAA
[ENA]
¢þ
>WENV183125772
OLNY01001754
[OLNY] human gut metagenome; faeces
10331
10414
+
Leu
CAA
[ENA]
¢þ
>WENV183154547
OLOR01006277
[OLOR] human gut metagenome; faeces
2165
2082
-
Leu
CAA
[ENA]
¢þ
>WENV183196701
OLPU01002623
[OLPU] human gut metagenome; faeces
6485
6402
-
Leu
CAA
[ENA]
¢þ
>WENV183234154
OLQV01013513
[OLQV] human gut metagenome; faeces
2217
2300
+
Leu
CAA
[ENA]
¢þ
>WENV183237989
OLQY01002923
[OLQY] human gut metagenome; faeces
4430
4513
+
Leu
CAA
[ENA]
¢þ
>WENV183242055
OLRB01003010
[OLRB] human gut metagenome; faeces
561
478
-
Leu
CAA
[ENA]
¢þ
>WENV183506762
OMGY01002628
[OMGY] human gut metagenome; human gut
6628
6711
+
Leu
CAA
[ENA]
¢þ
>WENV183607445
OODO01007630
[OODO] human gut metagenome; human gut
792
709
-
Leu
CAA
[ENA]
¢þ
>C181031804
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
763040
762957
-
Leu
CAA
-
¡û
>C181031977
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2059028
2059111
+
Leu
CAA
-
¡û
>C191025650
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2955767
2955684
-
Leu
CAA
-
¡û
>C191051241
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
1858445
1858528
+
Leu
CAA
-
¡û
>C191123837
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
1763372
1763289
-
Leu
CAA
-
¡û
>W09118946
ACDK01000030
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
26497
26414
-
Leu
CAA
[ENA]
¡û
>W1911493941
OBJV01000007
Bacillota
Clostridium tertium [OBJV]
198344
198261
-
Leu
CAA
[ENA]
¡û
>W1810604908
QGMU01000001
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
468449
468532
+
Leu
CAA
[ENA]
¡û
>W1810605023
QGMV01000015
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
54876
54793
-
Leu
CAA
[ENA]
¡û
>W1610099941
CYYT01000064
Bacillota
Clostridium disporicum [CYYT]
5733
5650
-
Leu
CAA
[ENA]
¡û
>W1610101624
CYZV01000009
Bacillota
Clostridium disporicum [CYZV]
96854
96937
+
Leu
CAA
[ENA]
¡û
>W1610507758
FLTT01000023
Bacillota
Clostridium septicum [FLTT]
50658
50741
+
Leu
CAA
[ENA]
¡û
>W1710102696
CYYT01000064
Bacillota
Clostridium disporicum [CYYT]
5733
5650
-
Leu
CAA
[ENA]
¡û
>W1710104379
CYZV01000009
Bacillota
Clostridium disporicum [CYZV]
96854
96937
+
Leu
CAA
[ENA]
¡û
>W1710499976
FLTT01000023
Bacillota
Clostridium septicum [FLTT]
50658
50741
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK