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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114323 (69 seq.)
>W1710871578
LMLK01000001
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
99682
99768
+
Leu
GAG
[ENA]
¡û
>W131000286
AFHN01000005
Gammaproteobacteria
Erwinia amylovora ACW56400 [AFHN]
84195
84281
+
Leu
GAG
[ENA]
¡û
>W131110174
APJK01000107
Gammaproteobacteria
Erwinia tracheiphila PSU-1 [APJK]
13590
13504
-
Leu
GAG
[ENA]
¡û
>W131243203
CAOX01000006
Gammaproteobacteria
Erwinia amylovora Ea356 [CAOX]
40417
40503
+
Leu
GAG
[ENA]
¡û
>W131243264
CAOY01000005
Gammaproteobacteria
Erwinia amylovora Ea266 [CAOY]
84454
84540
+
Leu
GAG
[ENA]
¡û
>W131243321
CAOZ01000006
Gammaproteobacteria
Erwinia amylovora CFBP 2585 [CAOZ]
40426
40512
+
Leu
GAG
[ENA]
¡û
>W131243385
CAPA01000005
Gammaproteobacteria
Erwinia amylovora 01SFR-BO [CAPA]
84195
84281
+
Leu
GAG
[ENA]
¡û
>W131243450
CAPB01000005
Gammaproteobacteria
Erwinia amylovora CFBP 1232 [CAPB]
84196
84282
+
Leu
GAG
[ENA]
¡û
>W131243515
CAPC01000005
Gammaproteobacteria
Erwinia amylovora UPN527 [CAPC]
84195
84281
+
Leu
GAG
[ENA]
¡û
>W131243580
CAPD01000005
Gammaproteobacteria
Erwinia amylovora Ea644 [CAPD]
84530
84616
+
Leu
GAG
[ENA]
¡û
>W131243643
CAPE01000006
Gammaproteobacteria
Erwinia amylovora MR1 [CAPE]
84077
84163
+
Leu
GAG
[ENA]
¡û
>W141236016
BAYW01000004
Gammaproteobacteria
Erwinia amylovora NBRC 12687 [BAYW]
239487
239401
-
Leu
GAG
[ENA]
¡û
>W141241847
CAHS01000005
Gammaproteobacteria
Erwinia piriflorinigrans CFBP 5888 [CAHS]
88001
88087
+
Leu
GAG
[ENA]
¡û
>W141256211
CBVS010000005
Gammaproteobacteria
Erwinia amylovora LA635 [CBVS]
83995
84081
+
Leu
GAG
[ENA]
¡û
>W141256268
CBVT010000005
Gammaproteobacteria
Erwinia amylovora LA636 [CBVT]
83995
84081
+
Leu
GAG
[ENA]
¡û
>W141256325
CBVU010000005
Gammaproteobacteria
Erwinia amylovora LA637 [CBVU]
83995
84081
+
Leu
GAG
[ENA]
¡û
>C08004856
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
401607
401693
+
Leu
GAG
[Ensembl]
¡û
>WENV170700087
LIDZ01001432
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
203
117
-
Leu
GAG
[ENA]
¢þ
>W141461787
JFGT01000005
Gammaproteobacteria
Pantoea sp. IMH [JFGT]
366829
366915
+
Leu
GAG
[ENA]
¡û
>W141462181
JFHN01000045
Gammaproteobacteria
Erwinia mallotivora [JFHN]
73969
74055
+
Leu
GAG
[ENA]
¡û
>C181084889
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
3571428
3571342
-
Leu
GAG
-
¡û
>C181109714
CP024970
Gammaproteobacteria
Erwinia amylovora E-2 [CP024970]
3370636
3370550
-
Leu
GAG
-
¡û
>C191021115
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
4483213
4483299
+
Leu
GAG
-
¡û
>C191155848
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
822078
821992
-
Leu
GAG
-
¡û
>W141820884
JQNE01000001
Gammaproteobacteria
Erwinia sp. 9145 [JQNE]
3389955
3389869
-
Leu
GAG
[ENA]
¡û
>W1910576059
JRZZ01000009
Gammaproteobacteria
Erwinia sp. B116 [JRZZ]
88253
88339
+
Leu
GAG
[ENA]
¡û
>W1910665033
MCFB01000012
Gammaproteobacteria
Erwinia amylovora Ea321 [MCFB]
84857
84943
+
Leu
GAG
[ENA]
¡û
>W1910803931
MTCH01000029
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
29415
29501
+
Leu
GAG
[ENA]
¡û
>W1911174220
NQJK01000001
Gammaproteobacteria
Erwinia amylovora MASHBO [NQJK]
1224910
1224996
+
Leu
GAG
[ENA]
¡û
>W1911174315
NQJL01000001
Gammaproteobacteria
Erwinia amylovora VTDMSF02 [NQJL]
3477186
3477100
-
Leu
GAG
[ENA]
¡û
>W1911174390
NQJM01000001
Gammaproteobacteria
Erwinia amylovora RISTBO01-2 [NQJM]
3478972
3478886
-
Leu
GAG
[ENA]
¡û
>W1911174465
NQJN01000001
Gammaproteobacteria
Erwinia amylovora MAGFLF 2 [NQJN]
3475618
3475532
-
Leu
GAG
[ENA]
¡û
>W1911174540
NQJO01000001
Gammaproteobacteria
Erwinia amylovora CTBT3-1 [NQJO]
3472083
3471997
-
Leu
GAG
[ENA]
¡û
>W1911174615
NQJP01000001
Gammaproteobacteria
Erwinia amylovora CTBT1-1 [NQJP]
3475443
3475357
-
Leu
GAG
[ENA]
¡û
>W1911174704
NQJQ01000046
Gammaproteobacteria
Erwinia amylovora WSDA87-73 [NQJQ]
84857
84943
+
Leu
GAG
[ENA]
¡û
>W1911174739
NQJR01000027
Gammaproteobacteria
Erwinia amylovora VTBL01-1 [NQJR]
84857
84943
+
Leu
GAG
[ENA]
¡û
>W1911174830
NQJS01000057
Gammaproteobacteria
Erwinia amylovora UT5P4 [NQJS]
84857
84943
+
Leu
GAG
[ENA]
¡û
>W1911174901
NQJT01000012
Gammaproteobacteria
Erwinia amylovora OR6 [NQJT]
344462
344376
-
Leu
GAG
[ENA]
¡û
>W1911174984
NQJU01000051
Gammaproteobacteria
Erwinia amylovora OR1 [NQJU]
84896
84982
+
Leu
GAG
[ENA]
¡û
>W1911175036
NQJV01000034
Gammaproteobacteria
Erwinia amylovora NHWL02-2 [NQJV]
84590
84676
+
Leu
GAG
[ENA]
¡û
>W1911175128
NQJW01000044
Gammaproteobacteria
Erwinia amylovora NHSB01-1 [NQJW]
84857
84943
+
Leu
GAG
[ENA]
¡û
>W1911175178
NQJX01000025
Gammaproteobacteria
Erwinia amylovora MANB02-1 [NQJX]
84590
84676
+
Leu
GAG
[ENA]
¡û
>W1911175213
NQJY01000006
Gammaproteobacteria
Erwinia amylovora LA092 [NQJY]
84464
84550
+
Leu
GAG
[ENA]
¡û
>W1911175346
NQJZ01000067
Gammaproteobacteria
Erwinia amylovora EA110 [NQJZ]
84592
84678
+
Leu
GAG
[ENA]
¡û
>W1911175355
NQKA01000035
Gammaproteobacteria
Erwinia amylovora CTST01-1 [NQKA]
84638
84724
+
Leu
GAG
[ENA]
¡û
>W1911175441
NQKB01000026
Gammaproteobacteria
Erwinia amylovora CTMF03-1 [NQKB]
84983
85069
+
Leu
GAG
[ENA]
¡û
>W1911175499
NQKC01000039
Gammaproteobacteria
Erwinia amylovora CA3R [NQKC]
84311
84397
+
Leu
GAG
[ENA]
¡û
>W1911568645
PCQJ01000011
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
87964
88050
+
Leu
GAG
[ENA]
¡û
>W1911671461
QGAC01000014
Gammaproteobacteria
Erwinia persicina CFBP13511 [QGAC]
65690
65604
-
Leu
GAG
[ENA]
¡û
>W1810053920
PDET01000007
Gammaproteobacteria
Pantoea coffeiphila 342 [PDET]
90571
90657
+
Leu
GAG
[ENA]
¡û
>W1510076730
CDPK01000007
Gammaproteobacteria
Erwinia sp. ErVv1 [CDPK]
47157
47243
+
Leu
GAG
[ENA]
¡û
>C10105445
FN434113
Gammaproteobacteria
Erwinia amylovora CFBP1430 CFPB1430 [FN434113]
401451
401537
+
Leu
GAG
[Ensembl]
¡û
>C10105556
FN666575
Gammaproteobacteria
Erwinia amylovora ATCC 49946 [FN666575]
3369838
3369752
-
Leu
GAG
[Ensembl]
¡û
>C10106518
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
426115
426201
+
Leu
GAG
[Ensembl]
¡û
>C10106593
FN392235
Gammaproteobacteria
Erwinia pyrifoliae DSM 12163 [FN392235]
426131
426217
+
Leu
GAG
[Ensembl]
¡û
>C11108928
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
1698564
1698650
+
Leu
GAG
[Ensembl]
¡û
>W1511205176
JMSO01000019
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [JMSO]
10280
10366
+
Leu
GAG
[ENA]
¡û
>W1511248248
JNVB01000005
Gammaproteobacteria
Erwinia oleae DAPP-PG531 [JNVB]
47797
47883
+
Leu
GAG
[ENA]
¡û
>W1511356754
JRUQ01000027
Gammaproteobacteria
Erwinia typographi M043b [JRUQ]
84181
84267
+
Leu
GAG
[ENA]
¡û
>W1511507565
JXNU01000003
Gammaproteobacteria
Erwinia tracheiphila BuffGH [JXNU]
3832616
3832702
+
Leu
GAG
[ENA]
¡û
>C121016313
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
4473872
4473786
-
Leu
GAG
[Ensembl]
¡û
>W1610070792
BCTN01000007
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
144299
144213
-
Leu
GAG
[ENA]
¡û
>W1610575643
LAGP01000005
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
91544
91630
+
Leu
GAG
[ENA]
¡û
>W1610575705
LAGQ01000015
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
637
723
+
Leu
GAG
[ENA]
¡û
>W1610733924
LMLK01000001
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
99682
99768
+
Leu
GAG
[ENA]
¡û
>W1710068114
BCTN01000007
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
144299
144213
-
Leu
GAG
[ENA]
¡û
>W1710693907
LAGP01000005
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
91544
91630
+
Leu
GAG
[ENA]
¡û
>W1710693969
LAGQ01000015
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
637
723
+
Leu
GAG
[ENA]
¡û
>W1710754864
LHXI01000016
Gammaproteobacteria
Erwinia billingiae [LHXI]
324578
324492
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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