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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114537 (21 seq.)
>C171100928
CP019915
Gammaproteobacteria
Halomonas sp. 'Soap Lake #7' [CP019915]
2310171
2310257
+
Leu
TAA
-
¡û
>C171109366
CP020562
Gammaproteobacteria
Halomonas sp. GT [CP020562]
1297530
1297444
-
Leu
TAA
-
¡û
>W131174833
ARIT01000017
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
600748
600662
-
Leu
TAA
[ENA]
¡û
>WENV170271577
CERJ01051508
[CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
184
270
+
Leu
TAA
[ENA]
¢þ
>WENV170683435
LFIK01011702
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
532
446
-
Leu
TAA
[ENA]
¢þ
>C181019895
CP016490
Gammaproteobacteria
Halomonas sp. GFAJ-1 [CP016490]
3317377
3317463
+
Leu
TAA
-
¡û
>C181044742
CP020469
Gammaproteobacteria
Halomonas sp. 'Soap Lake #6' [CP020469]
2310171
2310257
+
Leu
TAA
-
¡û
>C181088255
CP023656
Gammaproteobacteria
Halomonas hydrothermalis Y2 [CP023656]
2715252
2715166
-
Leu
TAA
-
¡û
>W141555789
JHQL01000001
Gammaproteobacteria
Halomonas alkaliantarctica [JHQL]
958305
958219
-
Leu
TAA
[ENA]
¡û
>W1910377548
FUKM01000017
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
39527
39613
+
Leu
TAA
[ENA]
¡û
>W1911245352
NSKA01000001
Gammaproteobacteria
Halomonas humidisoli WN018 [NSKA]
46254
46340
+
Leu
TAA
[ENA]
¡û
>W1911411707
NWUX01000002
Gammaproteobacteria
Halomonas nigrificans MBT G8648 [NWUX]
35364
35278
-
Leu
TAA
[ENA]
¡û
>W1810121097
PHUC01000002
Gammaproteobacteria
Halomonas sp. es.049 es.049 ES.049 [PHUC]
3239891
3239805
-
Leu
TAA
[ENA]
¡û
>W1810144794
PINZ01000013
Gammaproteobacteria
Halomonas sp. 141 [PINZ]
34392
34306
-
Leu
TAA
[ENA]
¡û
>C151033767
CP007757
Gammaproteobacteria
Halomonas campaniensis LS21 [CP007757]
2664013
2663927
-
Leu
TAA
[Ensembl]
¡û
>W1511398607
JTDR01000017
Gammaproteobacteria
Halomonas hydrothermalis MTCC 5445 [JTDR]
16074
15988
-
Leu
TAA
[ENA]
¡û
>W11171880
AFQW01000030
Gammaproteobacteria
Halomonas sp. TD01 [AFQW]
23102
23016
-
Leu
TAA
[ENA]
¡û
>W121023798
AHBC01000056
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
39627
39713
+
Leu
TAA
[ENA]
¡û
>W121067809
AJTS01000029
Gammaproteobacteria
Halomonas stevensii S18214 [AJTS]
46729
46815
+
Leu
TAA
[ENA]
¡û
>W1710719198
LFGS01000019
Gammaproteobacteria
Halomonas sp. BC1 [LFGS]
783619
783533
-
Leu
TAA
[ENA]
¡û
>W1710719249
LFGT01000020
Gammaproteobacteria
Halomonas sp. BC2 [LFGT]
34839
34753
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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