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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114625 (36 seq.)
>W1711294745
MABH01000027
Alphaproteobacteria
Cereibacter johrii [MABH]
3143
3060
-
Leu
CAA
[ENA]
¡û
>C171037010
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
1609172
1609089
-
Leu
CAA
-
¡û
>W131058658
ANFS01000031
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
118543
118626
+
Leu
CAA
[ENA]
¡û
>C019235
CP000143
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
1609228
1609145
-
Leu
CAA
[Ensembl]
¡û
>C019265
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
929780
929863
+
Leu
CAA
[Ensembl]
¡û
>C019325
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
1655889
1655806
-
Leu
CAA
[Ensembl]
¡û
>WENV180232047
OBCO01000071
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
69740
69823
+
Leu
CAA
[ENA]
¢þ
>WENV180232717
OBCP01000001
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
172432
172349
-
Leu
CAA
[ENA]
¢þ
>w001267
AAAE01000148
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
68689
68604
-
Leu
CAA
[ENA]
¡û
>WENV180569571
OCLR01000188
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
95256
95173
-
Leu
CAA
[ENA]
¢þ
>WENV180570409
OCLS01000090
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
172432
172349
-
Leu
CAA
[ENA]
¢þ
>WENV180571375
OCLT01000069
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
69734
69817
+
Leu
CAA
[ENA]
¢þ
>WENV180573362
OCLW01000006
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
567001
567084
+
Leu
CAA
[ENA]
¢þ
>WENV180639691
OCRL01000072
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
69734
69817
+
Leu
CAA
[ENA]
¢þ
>WENV180640329
OCRM01000001
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
172432
172349
-
Leu
CAA
[ENA]
¢þ
>C181017241
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
1609162
1609079
-
Leu
CAA
-
¡û
>C181084403
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
1647283
1647366
+
Leu
CAA
-
¡û
>C181191126
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
1609187
1609104
-
Leu
CAA
-
¡û
>C191079642
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
785734
785817
+
Leu
CAA
-
¡û
>C191151005
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
1398968
1399051
+
Leu
CAA
-
¡û
>W09104748
AAME01000066
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
4987
5070
+
Leu
CAA
[ENA]
¡û
>W09104793
AAMF01000010
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
85445
85362
-
Leu
CAA
[ENA]
¡û
>W1910548844
FZOV01000001
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
220372
220455
+
Leu
CAA
[ENA]
¡û
>C09109073
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
1274836
1274753
-
Leu
CAA
[Ensembl]
¡û
>W1911749455
QWGP01000017
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
25453
25370
-
Leu
CAA
[ENA]
¡û
>W1911766287
QXDK01000016
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
22781
22698
-
Leu
CAA
[ENA]
¡û
>W1810116259
PHOB01000022
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
10430
10347
-
Leu
CAA
[ENA]
¡û
>W1810119961
PHSI01000080
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
18680
18597
-
Leu
CAA
[ENA]
¡û
>W1810463826
PZZW01000002
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
282103
282020
-
Leu
CAA
[ENA]
¡û
>W1810477384
QAOT01000016
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
93291
93374
+
Leu
CAA
[ENA]
¡û
>W1810699120
QMCC01000008
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
361337
361254
-
Leu
CAA
[ENA]
¡û
>W1810785200
QRBG01000025
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
186121
186038
-
Leu
CAA
[ENA]
¡û
>W11160193
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
1032046
1031963
-
Leu
CAA
[ENA]
¡û
>C161048370
CP012960
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
1609168
1609085
-
Leu
CAA
-
¡û
>W121076794
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
2631116
2631033
-
Leu
CAA
[ENA]
¡û
>W121102141
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
1609180
1609097
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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