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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114626 (35 seq.)
>W1711294744
MABH01000024
Alphaproteobacteria
Cereibacter johrii [MABH]
9779
9696
-
Leu
TAA
[ENA]
¡û
>C171036986
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
512637
512720
+
Leu
TAA
-
¡û
>W131058645
ANFS01000015
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
206647
206730
+
Leu
TAA
[ENA]
¡û
>C019211
CP000143
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
512637
512720
+
Leu
TAA
[Ensembl]
¡û
>C019279
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
2112636
2112719
+
Leu
TAA
[Ensembl]
¡û
>C019303
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
590248
590331
+
Leu
TAA
[Ensembl]
¡û
>WENV180232014
OBCO01000057
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
224819
224902
+
Leu
TAA
[ENA]
¢þ
>WENV180232763
OBCP01000006
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
224819
224902
+
Leu
TAA
[ENA]
¢þ
>w001240
AAAE01000093
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
8024
8107
+
Leu
TAA
[ENA]
¡û
>WENV180569375
OCLR01000043
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
224819
224902
+
Leu
TAA
[ENA]
¢þ
>WENV180570478
OCLS01000150
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
46551
46468
-
Leu
TAA
[ENA]
¢þ
>WENV180571300
OCLT01000038
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
224819
224902
+
Leu
TAA
[ENA]
¢þ
>WENV180573588
OCLW01000053
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
224819
224902
+
Leu
TAA
[ENA]
¢þ
>WENV180639615
OCRL01000041
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
224819
224902
+
Leu
TAA
[ENA]
¢þ
>WENV180640601
OCRM01000055
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
224819
224902
+
Leu
TAA
[ENA]
¢þ
>C181017217
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
512627
512710
+
Leu
TAA
-
¡û
>C181191102
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
512633
512716
+
Leu
TAA
-
¡û
>C191079656
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
1852225
1852308
+
Leu
TAA
-
¡û
>C191150999
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
570126
570209
+
Leu
TAA
-
¡û
>W09104713
AAME01000005
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
166646
166729
+
Leu
TAA
[ENA]
¡û
>W09104769
AAMF01000001
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
139917
139834
-
Leu
TAA
[ENA]
¡û
>W1910548875
FZOV01000004
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
54058
53975
-
Leu
TAA
[ENA]
¡û
>C09109042
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
224322
224405
+
Leu
TAA
[Ensembl]
¡û
>W1911749452
QWGP01000016
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
68791
68708
-
Leu
TAA
[ENA]
¡û
>W1911766293
QXDK01000022
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
30192
30275
+
Leu
TAA
[ENA]
¡û
>W1810116261
PHOB01000024
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
34429
34346
-
Leu
TAA
[ENA]
¡û
>W1810119936
PHSI01000016
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
58119
58202
+
Leu
TAA
[ENA]
¡û
>W1810463806
PZZW01000001
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
266782
266865
+
Leu
TAA
[ENA]
¡û
>W1810477365
QAOT01000004
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
9404
9321
-
Leu
TAA
[ENA]
¡û
>W1810699094
QMCC01000003
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
205970
206053
+
Leu
TAA
[ENA]
¡û
>W1810785173
QRBG01000006
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
299358
299441
+
Leu
TAA
[ENA]
¡û
>W11160180
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
3082347
3082430
+
Leu
TAA
[ENA]
¡û
>C161048346
CP012960
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
512636
512719
+
Leu
TAA
-
¡û
>W121076780
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
1534500
1534583
+
Leu
TAA
[ENA]
¡û
>W121102117
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
512636
512719
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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