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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114771 (52 seq.)
>W1711501753
MKRY01000417
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
1425
1511
+
Leu
CAG
[ENA]
¡û
>W1711718123
MTHE01000014
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
47672
47758
+
Leu
CAG
[ENA]
¡û
>W1712106186
NIVP01000013
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
9413
9327
-
Leu
CAG
[ENA]
¡û
>WENV180014176
FPIC01076785
[FPIC] soil metagenome; Soil
284
369
+
Leu
CAG
[ENA]
¢þ
>WENV180017096
FSWM01000298
[FSWM] metagenome; soil
93
7
-
Leu
CAG
[ENA]
¢þ
>WENV180017097
FSWM01000315
[FSWM] metagenome; soil
7
93
+
Leu
CAG
[ENA]
¢þ
>WENV180017143
FSWM01000908
[FSWM] metagenome; soil
12696
12610
-
Leu
CAG
[ENA]
¢þ
>WENV180018787
FTAI01001641
[FTAI] metagenome; soil
516
602
+
Leu
CAG
[ENA]
¢þ
>WENV180018838
FTAP01000224
[FTAP] metagenome; soil
8450
8535
+
Leu
CAG
[ENA]
¢þ
>WENV180022252
FTFU01002392
[FTFU] metagenome; soil
2349
2435
+
Leu
CAG
[ENA]
¢þ
>WENV180022808
FTGS01002568
[FTGS] metagenome; soil
130
44
-
Leu
CAG
[ENA]
¢þ
>WENV180023739
FTIE01130202
[FTIE] metagenome; soil
66
152
+
Leu
CAG
[ENA]
¢þ
>WENV180023806
FTIF01000632
[FTIF] metagenome; soil
6247
6333
+
Leu
CAG
[ENA]
¢þ
>WENV180023957
FTIF01005136
[FTIF] metagenome; soil
914
1000
+
Leu
CAG
[ENA]
¢þ
>WENV180024665
FTII01152632
[FTII] metagenome; soil
229
315
+
Leu
CAG
[ENA]
¢þ
>WENV180024677
FTII01212877
[FTII] metagenome; soil
752
838
+
Leu
CAG
[ENA]
¢þ
>WENV180025923
FTIR01000210
[FTIR] metagenome; soil
20733
20647
-
Leu
CAG
[ENA]
¢þ
>WENV180026193
FTIR01307882
[FTIR] metagenome; soil
1002
916
-
Leu
CAG
[ENA]
¢þ
>WENV180029523
FTJK01008507
[FTJK] metagenome; soil
341
427
+
Leu
CAG
[ENA]
¢þ
>WENV180030095
FTJL01152637
[FTJL] metagenome; soil
164
250
+
Leu
CAG
[ENA]
¢þ
>WENV180030209
FTJL01352741
[FTJL] metagenome; soil
768
854
+
Leu
CAG
[ENA]
¢þ
>WENV180030343
FTJM01000405
[FTJM] metagenome; soil
2690
2776
+
Leu
CAG
[ENA]
¢þ
>WENV180031378
FTJO01039451
[FTJO] metagenome; soil
330
416
+
Leu
CAG
[ENA]
¢þ
>WENV180031681
FTJQ01153156
[FTJQ] metagenome; soil
164
250
+
Leu
CAG
[ENA]
¢þ
>WENV180032323
FTJY01085062
[FTJY] metagenome; soil
134
218
+
Leu
CAG
[ENA]
¢þ
>WENV180034333
FTKP01249003
[FTKP] metagenome; soil
33
119
+
Leu
CAG
[ENA]
¢þ
>WENV180035257
FTKT01044576
[FTKT] metagenome; soil
5343
5257
-
Leu
CAG
[ENA]
¢þ
>W141042995
AMFA01000024
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
37001
37087
+
Leu
CAG
[ENA]
¡û
>WENV180694922
OCZS012828096
[OCZS] soil metagenome; soil
95
181
+
Leu
CAG
[ENA]
¢þ
>WENV181402432
OFTY01001488
[OFTY] sludge metagenome; sludge
7958
7872
-
Leu
CAG
[ENA]
¢þ
>WENV181732415
OGQD01033306
[OGQD] human gut metagenome; faeces
739
825
+
Leu
CAG
[ENA]
¢þ
>WENV182543956
OJBD01003195
[OJBD] seawater metagenome; Sea water
546
632
+
Leu
CAG
[ENA]
¢þ
>C08007877
CP000747
Alphaproteobacteria
Phenylobacterium zucineum HLK1 [CP000747]
164027
164113
+
Leu
CAG
[Ensembl]
¡û
>WENV183727612
PJTP01000033
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
222946
223032
+
Leu
CAG
[ENA]
¢þ
>WENV183728873
PJTQ01000817
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
3519
3605
+
Leu
CAG
[ENA]
¢þ
>WENV183733266
PJTY01000558
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
9307
9221
-
Leu
CAG
[ENA]
¢þ
>WENV183735489
PJUB01000014
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
319349
319435
+
Leu
CAG
[ENA]
¢þ
>WENV183738899
PJUE01000381
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
22517
22603
+
Leu
CAG
[ENA]
¢þ
>WENV183740310
PJUF01001103
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
9339
9253
-
Leu
CAG
[ENA]
¢þ
>WENV170586473
FUFK010419572
[FUFK] metagenome; unknown
217
303
+
Leu
CAG
[ENA]
¢þ
>WENV170645935
JQGF01001180
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
135
49
-
Leu
CAG
[ENA]
¢þ
>WENV170680743
LFEF01016369
[LFEF] freshwater metagenome; waterbloom
313
399
+
Leu
CAG
[ENA]
¢þ
>C181097360
CP024201
Alphaproteobacteria
Caulobacter mirabilis FWC 38 [CP024201]
4544960
4544874
-
Leu
CAG
-
¡û
>C191093986
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
630407
630493
+
Leu
CAG
-
¡û
>C191134456
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
1293045
1292959
-
Leu
CAG
-
¡û
>C191220430
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
2696235
2696321
+
Leu
CAG
-
¡û
>W1910182694
BJNC01000016
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
48625
48711
+
Leu
CAG
[ENA]
¡û
>W1910374324
FUIE01000039
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
55221
55307
+
Leu
CAG
[ENA]
¡û
>W1910743281
MHXO01000296
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 [MHXO]
4423
4337
-
Leu
CAG
[ENA]
¡û
>W1810693139
QLLC01000001
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
193946
194032
+
Leu
CAG
[ENA]
¡û
>W11123412
ADUI01000043
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
23559
23645
+
Leu
CAG
[ENA]
¡û
>W1511596045
LBNT01000002
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
47749
47835
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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