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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115067 (113 seq.)
>W1710854413
LLXM01000014
Gammaproteobacteria
Marinobacter sp. P4B1 [LLXM]
11302
11385
+
Tyr
GTA
[ENA]
¡û
>W1711124904
LUKQ02000089
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
8028
8111
+
Tyr
GTA
[ENA]
¡û
>W1711129219
LUTV01000003
Gammaproteobacteria
Endozoicomonas ascidiicola [LUTV]
283531
283614
+
Tyr
GTA
[ENA]
¡û
>W1711129298
LUTW01000002
Gammaproteobacteria
Endozoicomonas ascidiicola [LUTW]
697556
697473
-
Tyr
GTA
[ENA]
¡û
>W1711174422
LWEE01000387
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
178721
178804
+
Tyr
GTA
[ENA]
¡û
>W1711179218
LWHM01000023
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-49 [LWHM]
18437
18520
+
Tyr
GTA
[ENA]
¡û
>W1711179242
LWHN01000006
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-111 [LWHN]
1601
1518
-
Tyr
GTA
[ENA]
¡û
>W131229484
AUGV01000015
Gammaproteobacteria
Oceanobacter kriegii DSM 6294 [AUGV]
167009
167092
+
Tyr
GTA
[ENA]
¡û
>C171068008
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
3721315
3721232
-
Tyr
GTA
-
¡û
>C171094606
CP019450
Gammaproteobacteria
Halioglobus japonicus NBRC 107739 [CP019450]
4031434
4031351
-
Tyr
GTA
-
¡û
>C171118688
CP021425
Gammaproteobacteria
Oleiphilus messinensis ME102 [CP021425]
729243
729326
+
Tyr
GTA
-
¡û
>W131230172
AUHJ01000041
Gammaproteobacteria
Haliea salexigens DSM 19537 [AUHJ]
8037
8120
+
Tyr
GTA
[ENA]
¡û
>W131161643
AQXX01000026
Gammaproteobacteria
Hahella ganghwensis DSM 17046 [AQXX]
481
398
-
Tyr
GTA
[ENA]
¡û
>W131169979
ARFE01000003
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
8233
8316
+
Tyr
GTA
[ENA]
¡û
>w021646
AAVV01000001
Gammaproteobacteria
marine gamma proteobacterium HTCC2080 [AAVV]
230483
230566
+
Tyr
GTA
[ENA]
¡û
>w016594
AAQH01000008
Gammaproteobacteria
Bermanella marisrubri RED65 [AAQH]
42826
42746
-
Tyr
GTA
[ENA]
¡û
>WENV180103049
OAPA01000606
[OAPA] marine metagenome; ENVO:00002010
2944
2861
-
Tyr
GTA
[ENA]
¢þ
>WENV180104299
OAPC01000981
[OAPC] marine metagenome; na
1857
1774
-
Tyr
GTA
[ENA]
¢þ
>WENV180114459
OAPS01010899
[OAPS] marine metagenome; sea water
948
865
-
Tyr
GTA
[ENA]
¢þ
>WENV180283078
OBIC01100000
[OBIC] beach sand metagenome; beach sand
246
163
-
Tyr
GTA
[ENA]
¢þ
>WENV180293843
OBIY01002240
[OBIY] beach sand metagenome; beach sand
4492
4575
+
Tyr
GTA
[ENA]
¢þ
>WENV180309733
OBJS01028173
[OBJS] beach sand metagenome; beach sand
233
316
+
Tyr
GTA
[ENA]
¢þ
>WENV180346382
OBLN01080254
[OBLN] sediment metagenome; sediment
373
456
+
Tyr
GTA
[ENA]
¢þ
>WENV180359211
OBNR01017117
[OBNR] marine metagenome; Seawater_00002010_00002149
300
217
-
Tyr
GTA
[ENA]
¢þ
>WENV180360462
OBNU01000039
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
582
499
-
Tyr
GTA
[ENA]
¢þ
>WENV180368687
OBOF01202032
[OBOF] marine metagenome; ENVO:00002010
161
78
-
Tyr
GTA
[ENA]
¢þ
>WENV180387557
OBPF01011543
[OBPF] marine metagenome; Sterile flask
217
300
+
Tyr
GTA
[ENA]
¢þ
>WENV180387906
OBPG01008866
[OBPG] marine metagenome; Sterile flask
611
528
-
Tyr
GTA
[ENA]
¢þ
>WENV180394911
OBPS01172858
[OBPS] marine metagenome; ENVO:00002010 seawater
318
235
-
Tyr
GTA
[ENA]
¢þ
>WENV180395282
OBPT01005973
[OBPT] marine metagenome; ENVO:00002010 seawater
1644
1727
+
Tyr
GTA
[ENA]
¢þ
>WENV180395620
OBPT01055744
[OBPT] marine metagenome; ENVO:00002010 seawater
44
127
+
Tyr
GTA
[ENA]
¢þ
>WENV180395926
OBPU01001691
[OBPU] marine metagenome; ENVO:00002010
357
440
+
Tyr
GTA
[ENA]
¢þ
>WENV180590373
OCOT01003578
[OCOT] marine metagenome; ENVO:00002010
515
432
-
Tyr
GTA
[ENA]
¢þ
>WENV180594790
OCPA01009916
[OCPA] marine metagenome; ENVO:00002010
319
402
+
Tyr
GTA
[ENA]
¢þ
>WENV180638037
OCRH01004309
[OCRH] marine metagenome; ENVO_00002010
459
376
-
Tyr
GTA
[ENA]
¢þ
>WENV180638983
OCRI01072276
[OCRI] marine metagenome; Sterile flask
216
133
-
Tyr
GTA
[ENA]
¢þ
>WENV181320938
OFKJ01000857
[OFKJ] marine metagenome; sea ice
103
186
+
Tyr
GTA
[ENA]
¢þ
>WENV181329456
OFLX01003686
[OFLX] seawater metagenome; seawater
447
530
+
Tyr
GTA
[ENA]
¢þ
>WENV181839903
OGVO01021998
[OGVO] freshwater metagenome; freshwater
536
453
-
Tyr
GTA
[ENA]
¢þ
>WENV182541956
OJAV01000058
[OJAV] seawater metagenome; Sea water
80908
80991
+
Tyr
GTA
[ENA]
¢þ
>WENV182544027
OJBE01000026
[OJBE] seawater metagenome; Sea water
73742
73825
+
Tyr
GTA
[ENA]
¢þ
>WENV182544412
OJBG01000670
[OJBG] seawater metagenome; Sea water
2529
2446
-
Tyr
GTA
[ENA]
¢þ
>WENV182544635
OJBI01000581
[OJBI] seawater metagenome; Sea water
1708
1791
+
Tyr
GTA
[ENA]
¢þ
>WENV182545104
OJBM01000097
[OJBM] seawater metagenome; Sea water
49624
49707
+
Tyr
GTA
[ENA]
¢þ
>WENV182549511
OJBY01001553
[OJBY] seawater metagenome; Sea water
238
155
-
Tyr
GTA
[ENA]
¢þ
>WENV182549797
OJBZ01000043
[OJBZ] seawater metagenome; Sea water
86762
86845
+
Tyr
GTA
[ENA]
¢þ
>WENV182552631
OJCN01000104
[OJCN] seawater metagenome; Sea water
296
379
+
Tyr
GTA
[ENA]
¢þ
>WENV182557501
OJDK01000069
[OJDK] seawater metagenome; Sea water
76955
77038
+
Tyr
GTA
[ENA]
¢þ
>WENV182558793
OJDN01003713
[OJDN] seawater metagenome; Sea water
1300
1383
+
Tyr
GTA
[ENA]
¢þ
>WENV182559711
OJDQ01001559
[OJDQ] seawater metagenome; Sea water
6026
6109
+
Tyr
GTA
[ENA]
¢þ
>WENV182559973
OJDR01000061
[OJDR] seawater metagenome; Sea water
47179
47262
+
Tyr
GTA
[ENA]
¢þ
>WENV182561854
OJDX01016562
[OJDX] seawater metagenome; Sea water
516
433
-
Tyr
GTA
[ENA]
¢þ
>WENV182562180
OJDZ01000040
[OJDZ] seawater metagenome; Sea water
1275
1192
-
Tyr
GTA
[ENA]
¢þ
>WENV182578026
OJGM01000612
[OJGM] seawater metagenome; Sea water
830
913
+
Tyr
GTA
[ENA]
¢þ
>WENV182589186
OJIA01000226
[OJIA] seawater metagenome; Sea water
193
276
+
Tyr
GTA
[ENA]
¢þ
>WENV182589652
OJIF01000208
[OJIF] seawater metagenome; Sea water
2163
2080
-
Tyr
GTA
[ENA]
¢þ
>WENV182591231
OJIL01002923
[OJIL] seawater metagenome; Sea water
2240
2157
-
Tyr
GTA
[ENA]
¢þ
>WENV183055173
OLGX01000054
[OLGX] seawater metagenome; Sea water
81649
81732
+
Tyr
GTA
[ENA]
¢þ
>WENV183056499
OLHJ01000263
[OLHJ] seawater metagenome; Sea water
5423
5340
-
Tyr
GTA
[ENA]
¢þ
>WENV183057301
OLHL01000260
[OLHL] seawater metagenome; Sea water
27742
27825
+
Tyr
GTA
[ENA]
¢þ
>WENV183058306
OLHP01005078
[OLHP] seawater metagenome; Sea water
518
435
-
Tyr
GTA
[ENA]
¢þ
>WENV183058383
OLHQ01003908
[OLHQ] seawater metagenome; Sea water
518
435
-
Tyr
GTA
[ENA]
¢þ
>WENV183059590
OLHV01000034
[OLHV] seawater metagenome; Sea water
98421
98504
+
Tyr
GTA
[ENA]
¢þ
>WENV183064884
OLII01002156
[OLII] seawater metagenome; Sea water
487
404
-
Tyr
GTA
[ENA]
¢þ
>WENV183522170
OMOM01000388
[OMOM] seawater metagenome; Sea water
24444
24527
+
Tyr
GTA
[ENA]
¢þ
>WENV183616314
OOED01002041
[OOED] marine metagenome; seawater
465
382
-
Tyr
GTA
[ENA]
¢þ
>WENV183621692
OOFU01031475
[OOFU] marine metagenome; sea ice
292
209
-
Tyr
GTA
[ENA]
¢þ
>WENV183626544
OOGI01032522
[OOGI] marine metagenome; seawater
290
207
-
Tyr
GTA
[ENA]
¢þ
>WENV183629546
OOGP01066771
[OOGP] marine metagenome; seawater
382
465
+
Tyr
GTA
[ENA]
¢þ
>WENV183705007
PDWI01000880
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
70968
71051
+
Tyr
GTA
[ENA]
¢þ
>WENV183718955
PDWJ01008101
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
487
404
-
Tyr
GTA
[ENA]
¢þ
>WENV170015684
AZII01002823
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
556
639
+
Tyr
GTA
[ENA]
¢þ
>WENV170120929
CENL01024530
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
222
139
-
Tyr
GTA
[ENA]
¢þ
>WENV170131340
CENS01047054
[CENS] marine metagenome genome assembly TARA_022_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
543
626
+
Tyr
GTA
[ENA]
¢þ
>WENV170155215
CEOG01003144
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13339
13422
+
Tyr
GTA
[ENA]
¢þ
>WENV170306623
CESJ01051608
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
250
167
-
Tyr
GTA
[ENA]
¢þ
>WENV170564930
CZQC01000067
[CZQC] hydrothermal vent metagenome; ocean water
98422
98339
-
Tyr
GTA
[ENA]
¢þ
>WENV170568159
FLMP01020032
[FLMP] seawater metagenome; seawater
750
667
-
Tyr
GTA
[ENA]
¢þ
>WENV170568992
FLMP01106237
[FLMP] seawater metagenome; seawater
624
707
+
Tyr
GTA
[ENA]
¢þ
>WENV170683136
LFIK01005323
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
9889
9972
+
Tyr
GTA
[ENA]
¢þ
>WENV170780012
MAAA01008515
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
2257
2340
+
Tyr
GTA
[ENA]
¢þ
>WENV170781661
MAAB01040813
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
50
133
+
Tyr
GTA
[ENA]
¢þ
>WENV170958124
MKWU01000544
[MKWU] sponge metagenome;
29087
29170
+
Tyr
GTA
[ENA]
¢þ
>W09109237
ABUB01000009
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
16926
17009
+
Tyr
GTA
[ENA]
¡û
>W09112184
ABXQ01000051
Gammaproteobacteria
marine gamma proteobacterium HTCC2148 [ABXQ]
182966
183049
+
Tyr
GTA
[ENA]
¡û
>C191132321
CP034836
Gammaproteobacteria
Hahella sp. KA22 [CP034836]
6085382
6085299
-
Tyr
GTA
-
¡û
>C191143783
CP035490
Gammaproteobacteria
Hahella sp. KA22 [CP035490]
6657259
6657176
-
Tyr
GTA
-
¡û
>W141775320
JOJP01000001
Gammaproteobacteria
Endozoicomonas elysicola [JOJP]
5267231
5267148
-
Tyr
GTA
[ENA]
¡û
>W1910923709
NIHC01000016
Gammaproteobacteria
Marinobacter salexigens HJR7 [NIHC]
538
455
-
Tyr
GTA
[ENA]
¡û
>W1911748785
QWEZ01000006
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
469
386
-
Tyr
GTA
[ENA]
¡û
>W1810176305
PJPV01000020
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
16341
16258
-
Tyr
GTA
[ENA]
¡û
>W1810192295
PKLZ01000018
Gammaproteobacteria
Kineobactrum sediminis F02 [PKLZ]
49269
49352
+
Tyr
GTA
[ENA]
¡û
>W1810196399
PKUR01000005
Gammaproteobacteria
Halioglobus japonicus S1-36 [PKUR]
476
393
-
Tyr
GTA
[ENA]
¡û
>W1810196425
PKUS01000012
Gammaproteobacteria
Pseudohalioglobus lutimaris HF004 [PKUS]
149742
149825
+
Tyr
GTA
[ENA]
¡û
>W1810425869
PYVP01000005
Gammaproteobacteria
Marinobacter vinifirmus Z-F7-3 [PYVP]
14238
14155
-
Tyr
GTA
[ENA]
¡û
>W1810582664
QEWO01000003
Gammaproteobacteria
Parahaliea mediterranea DSM 21924 [QEWO]
379423
379340
-
Tyr
GTA
[ENA]
¡û
>W1810725098
QOCH01000006
Gammaproteobacteria
Marinobacter sp. F3R11 [QOCH]
1508
1425
-
Tyr
GTA
[ENA]
¡û
>W1810783233
QQSW01000037
Gammaproteobacteria
Chromatocurvus halotolerans DSM 23344 [QQSW]
8986
9069
+
Tyr
GTA
[ENA]
¡û
>W1810784224
QRAN01000007
Gammaproteobacteria
Seongchinamella sediminis U0301 [QRAN]
1130
1047
-
Tyr
GTA
[ENA]
¡û
>C151013104
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
3498996
3498913
-
Tyr
GTA
[Ensembl]
¡û
>C10107997
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
444997
445080
+
Tyr
GTA
[Ensembl]
¡û
>W11138371
AEIG01000090
Gammaproteobacteria
Aequoribacter fuscus IMCC3088 [AEIG]
17898
17981
+
Tyr
GTA
[ENA]
¡û
>WENV046942
AACY022630475
Marine microbial communities from Global Ocean Sampling (GOS)
458
541
+
Tyr
GTA
[ENA]
>W1610024864
AUVB01000079
Gammaproteobacteria
Pseudohaliea rubra DSM 19751 [AUVB]
4219
4302
+
Tyr
GTA
[ENA]
¡û
>C131020998
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
3636021
3635938
-
Tyr
GTA
[Ensembl]
¡û
>W1610716690
LLXM01000014
Gammaproteobacteria
Marinobacter sp. P4B1 [LLXM]
11302
11385
+
Tyr
GTA
[ENA]
¡û
>W1610935852
LUKQ01000275
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
8028
8111
+
Tyr
GTA
[ENA]
¡û
>W1610940292
LUTV01000003
Gammaproteobacteria
Endozoicomonas ascidiicola [LUTV]
283531
283614
+
Tyr
GTA
[ENA]
¡û
>W1610940371
LUTW01000002
Gammaproteobacteria
Endozoicomonas ascidiicola [LUTW]
697556
697473
-
Tyr
GTA
[ENA]
¡û
>W1610982735
LWEE01000387
Gammaproteobacteria
Halioglobus sp. HI00S01 [LWEE]
178721
178804
+
Tyr
GTA
[ENA]
¡û
>W1610987119
LWHM01000023
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-49 [LWHM]
18437
18520
+
Tyr
GTA
[ENA]
¡û
>W1610987143
LWHN01000006
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-111 [LWHN]
1601
1518
-
Tyr
GTA
[ENA]
¡û
>W1710021305
AUVB01000079
Gammaproteobacteria
Pseudohaliea rubra DSM 19751 [AUVB]
4219
4302
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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