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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115236 (59 seq.)
>W1711116561
LUCI01000028
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
81320
81403
+
Leu
CAA
[ENA]
¡û
>W1711116633
LUCJ01000034
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
78202
78119
-
Leu
CAA
[ENA]
¡û
>W1711466172
MJMD01000013
Alphaproteobacteria
Novacetimonas hansenii [MJMD]
78141
78058
-
Leu
CAA
[ENA]
¡û
>W1711466217
MJME01000004
Alphaproteobacteria
Novacetimonas hansenii [MJME]
31931
31848
-
Leu
CAA
[ENA]
¡û
>W1711466290
MJMF01000073
Alphaproteobacteria
Novacetimonas hansenii [MJMF]
221140
221223
+
Leu
CAA
[ENA]
¡û
>C171100630
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
2600964
2601047
+
Leu
CAA
-
¡û
>C171119413
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
3048209
3048292
+
Leu
CAA
-
¡û
>W08009518
ABPH01000009
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
162473
162393
-
Leu
CAA
[ENA]
¡û
>W141224572
BAIN01000043
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
9289
9372
+
Leu
CAA
[ENA]
¡û
>C08005271
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
2315888
2315808
-
Leu
CAA
[Ensembl]
¡û
>W141402016
JDTI01000179
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
153872
153955
+
Leu
CAA
[ENA]
¡û
>WENV170669507
LAHS01000362
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
82869
82786
-
Leu
CAA
[ENA]
¢þ
>C181103447
CP024644
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 2955 [CP024644]
2833929
2833846
-
Leu
CAA
-
¡û
>C191023992
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
633782
633699
-
Leu
CAA
-
¡û
>C191150965
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2671382
2671465
+
Leu
CAA
-
¡û
>W1910015231
BDLU01000063
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
128064
128147
+
Leu
CAA
[ENA]
¡û
>W1910181804
BJMI01000039
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
8679
8596
-
Leu
CAA
[ENA]
¡û
>W1910182379
BJMV01000006
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
82843
82760
-
Leu
CAA
[ENA]
¡û
>W1910183216
BJNN01000070
Alphaproteobacteria
Novacetimonas hansenii NBRC 14820 [BJNN]
2110
2193
+
Leu
CAA
[ENA]
¡û
>C09106333
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
524126
524043
-
Leu
CAA
[Ensembl]
¡û
>W1910694761
MDTO01000362
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
5022
5105
+
Leu
CAA
[ENA]
¡û
>W1910695587
MDVY01000072
Alphaproteobacteria
Novacetimonas hansenii ATCC 53582 [MDVY]
20194
20277
+
Leu
CAA
[ENA]
¡û
>W1910695626
MDVZ01000006
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
5012
5095
+
Leu
CAA
[ENA]
¡û
>W1910929246
NIRT01000017
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
61731
61648
-
Leu
CAA
[ENA]
¡û
>W1910972016
NKCY01000002
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
506348
506265
-
Leu
CAA
[ENA]
¡û
>W1910990411
NKTX01000001
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
140848
140931
+
Leu
CAA
[ENA]
¡û
>W1910990470
NKTY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
64158
64075
-
Leu
CAA
[ENA]
¡û
>W1910990527
NKTZ01000004
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
143594
143677
+
Leu
CAA
[ENA]
¡û
>W1910990558
NKUA01000001
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
280890
280807
-
Leu
CAA
[ENA]
¡û
>W1910990624
NKUB01000005
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
29860
29943
+
Leu
CAA
[ENA]
¡û
>W1910990727
NKUD01000012
Alphaproteobacteria
Novacetimonas hansenii LMG 23726 [NKUD]
78170
78087
-
Leu
CAA
[ENA]
¡û
>W1910990766
NKUE01000005
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [NKUE]
125944
126027
+
Leu
CAA
[ENA]
¡û
>W1910990797
NKUF01000002
Alphaproteobacteria
Gluconacetobacter entanii LTH 4560 [NKUF]
178561
178644
+
Leu
CAA
[ENA]
¡û
>W1911138381
NOXG01000002
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
76830
76913
+
Leu
CAA
[ENA]
¡û
>W1810223481
POTC01000007
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [POTC]
9915
9832
-
Leu
CAA
[ENA]
¡û
>W1810268376
PRCW01000018
Alphaproteobacteria
Novacetimonas pomaceti AV446 [PRCW]
21870
21953
+
Leu
CAA
[ENA]
¡û
>W1810583847
QEXL01000009
Alphaproteobacteria
Novacetimonas cocois WE7 [QEXL]
96401
96484
+
Leu
CAA
[ENA]
¡û
>W1810763152
QQAW01000006
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
8774
8691
-
Leu
CAA
[ENA]
¡û
>W1810894189
QUWV01000140
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
9351
9434
+
Leu
CAA
[ENA]
¡û
>C151006016
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
463676
463759
+
Leu
CAA
[Ensembl]
¡û
>W10117675
ADTV01000011
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
20051
20134
+
Leu
CAA
[ENA]
¡û
>C11109980
AP012159
Alphaproteobacteria
Komagataeibacter medellinensis NBRC 3288 [AP012159]
2761454
2761537
+
Leu
CAA
[Ensembl]
¡û
>W11122664
ADTV01000011
Alphaproteobacteria
Novacetimonas hansenii ATCC 23769 [ADTV]
20051
20134
+
Leu
CAA
[ENA]
¡û
>W1511431891
JUFX01000255
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
109567
109650
+
Leu
CAA
[ENA]
¡û
>W11157677
AFCH01000047
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
43470
43553
+
Leu
CAA
[ENA]
¡û
>W11186765
CADP01000009
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
28305
28388
+
Leu
CAA
[ENA]
¡û
>W11186815
CADR01000002
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
77226
77143
-
Leu
CAA
[ENA]
¡û
>W1610041113
BANE01000412
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
2167
2250
+
Leu
CAA
[ENA]
¡û
>W1610041137
BANF01000059
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
24767
24850
+
Leu
CAA
[ENA]
¡û
>W1610041279
BANI01000225
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
3439
3356
-
Leu
CAA
[ENA]
¡û
>W1610041310
BANJ01000024
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
81086
81169
+
Leu
CAA
[ENA]
¡û
>W1610187958
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
658869
658952
+
Leu
CAA
[ENA]
¡û
>W1610927920
LUCI01000028
Alphaproteobacteria
Novacetimonas hansenii [LUCI]
81320
81403
+
Leu
CAA
[ENA]
¡û
>W1610927992
LUCJ01000034
Alphaproteobacteria
Novacetimonas hansenii [LUCJ]
78202
78119
-
Leu
CAA
[ENA]
¡û
>W1710038311
BANE01000412
Alphaproteobacteria
Novacetimonas hansenii JCM 7643 [BANE]
2167
2250
+
Leu
CAA
[ENA]
¡û
>W1710038335
BANF01000059
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
24767
24850
+
Leu
CAA
[ENA]
¡û
>W1710038477
BANI01000225
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
3439
3356
-
Leu
CAA
[ENA]
¡û
>W1710038508
BANJ01000024
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
81086
81169
+
Leu
CAA
[ENA]
¡û
>W1710189574
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
658869
658952
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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