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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115318 (23 seq.)
>W1711078555
LSMZ01000059
Bacillota
Clostridium sp. link-BC1 [LSMZ]
6681
6598
-
Leu
TAG
[ENA]
¡û
>W1711222560
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
1569593
1569510
-
Leu
TAG
[ENA]
¡û
>C007109
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
268230
268313
+
Leu
TAG
[Ensembl]
¡û
>W141067374
ASAA01000011
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
129274
129357
+
Leu
TAG
[ENA]
¡û
>W08011380
ABVG01000004
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
83098
83181
+
Leu
TAG
[ENA]
¡û
>WENV181554916
OGIS01018683
[OGIS] metagenome; Human gut stool
745
828
+
Leu
TAG
[ENA]
¢þ
>W141251464
CBQO010000010
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
34149
34232
+
Leu
TAG
[ENA]
¡û
>WENV182740522
OJQL01027159
[OJQL] human gut metagenome; stool sample
395
478
+
Leu
TAG
[ENA]
¢þ
>WENV183083232
OLJB01030120
[OLJB] human gut metagenome; human gut
469
386
-
Leu
TAG
[ENA]
¢þ
>WENV170684619
LFRM01049172
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
284801
284718
-
Leu
TAG
[ENA]
¢þ
>WENV170722965
LSQX01249798
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2178
2261
+
Leu
TAG
[ENA]
¢þ
>W09100432
AABG04000001
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
221489
221406
-
Leu
TAG
[ENA]
¡û
>W09135679
ACVX01000052
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
10249
10332
+
Leu
TAG
[ENA]
¡û
>W1911496631
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
1651393
1651476
+
Leu
TAG
[ENA]
¡û
>W1911572343
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
2379336
2379253
-
Leu
TAG
[ENA]
¡û
>C11106495
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
2373798
2373715
-
Leu
TAG
[Ensembl]
¡û
>C121005043
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
1532844
1532927
+
Leu
TAG
[Ensembl]
¡û
>C161060804
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
2379336
2379253
-
Leu
TAG
-
¡û
>C161097556
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
2378650
2378567
-
Leu
TAG
-
¡û
>W121061312
AJGS01000062
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
79132
79215
+
Leu
TAG
[ENA]
¡û
>W121061361
AJGT01000029
Bacillota
Acetivibrio thermocellus YS [AJGT]
3752
3669
-
Leu
TAG
[ENA]
¡û
>W1610605579
LFSC01000009
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
284801
284718
-
Leu
TAG
[ENA]
¡û
>W1710726866
LFSC01000009
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
284801
284718
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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