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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115876 (84 seq.)
>W1710905495
LNNH01000043
Bacillota
Peribacillus simplex [LNNH]
106946
106863
-
Tyr
GTA
[ENA]
¡û
>W1710905522
LNNH01000046
Bacillota
Peribacillus simplex [LNNH]
29671
29588
-
Tyr
GTA
[ENA]
¡û
>W131164018
ARAE01000003
Bacillota
Allobaculum stercoricanis DSM 13633 [ARAE]
362401
362318
-
Tyr
GTA
[ENA]
¡û
>W1711169908
LVZN01000012
Bacillota
Erysipelotrichaceae bacterium MTC7 [LVZN]
81396
81313
-
Tyr
GTA
[ENA]
¡û
>W1711190914
LWSG01000014
Bacillota
Metabacillus litoralis [LWSG]
74278
74195
-
Tyr
GTA
[ENA]
¡û
>W1711190946
LWSG01000024
Bacillota
Metabacillus litoralis [LWSG]
34500
34417
-
Tyr
GTA
[ENA]
¡û
>W1711190962
LWSG01000034
Bacillota
Metabacillus litoralis [LWSG]
343416
343333
-
Tyr
GTA
[ENA]
¡û
>W131251340
CAVL010000008
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
167629
167712
+
Tyr
GTA
[ENA]
¡û
>W131251351
CAVL010000036
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
45028
44945
-
Tyr
GTA
[ENA]
¡û
>W131251364
CAVL010000042
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
75963
75880
-
Tyr
GTA
[ENA]
¡û
>W131251407
CAVL010000056
Bacillota
Bacillus massiliigorillae G2(2012b) [CAVL]
117940
117857
-
Tyr
GTA
[ENA]
¡û
>W1711720239
MTIR01000002
Bacillota
Metabacillus halosaccharovorans [MTIR]
642
725
+
Tyr
GTA
[ENA]
¡û
>W1711720265
MTIR01000004
Bacillota
Metabacillus halosaccharovorans [MTIR]
2026979
2026896
-
Tyr
GTA
[ENA]
¡û
>W1711720286
MTIR01000004
Bacillota
Metabacillus halosaccharovorans [MTIR]
1349096
1349013
-
Tyr
GTA
[ENA]
¡û
>C171045198
CP016020
Bacillota
Bacillus weihaiensis Alg07 [CP016020]
4003637
4003554
-
Tyr
GTA
-
¡û
>C171045224
CP016020
Bacillota
Bacillus weihaiensis Alg07 [CP016020]
3496247
3496164
-
Tyr
GTA
-
¡û
>C171045244
CP016020
Bacillota
Bacillus weihaiensis Alg07 [CP016020]
2885965
2885882
-
Tyr
GTA
-
¡û
>C171056608
CP017080
Bacillota
Peribacillus muralis G25-68 [CP017080]
150519
150602
+
Tyr
GTA
-
¡û
>WENV180226103
OBBP01052453
[OBBP] human oral metagenome; human oral
223
140
-
Tyr
GTA
[ENA]
¢þ
>W141022290
AJTN02000072
Bacillota
Peribacillus psychrosaccharolyticus ATCC 23296 [AJTN]
1057
1140
+
Tyr
GTA
[ENA]
¡û
>W141022358
AJTN02000265
Bacillota
Peribacillus psychrosaccharolyticus ATCC 23296 [AJTN]
709
792
+
Tyr
GTA
[ENA]
¡û
>WENV180725549
ODGS01000166
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
4539
4456
-
Tyr
GTA
[ENA]
¢þ
>WENV180725987
ODGS01011971
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
594
512
-
Tyr
GTA
[ENA]
¢þ
>WENV180736371
ODHB01032825
[ODHB] human metagenome; G_DNA_Supragingival plaque
101
184
+
Tyr
GTA
[ENA]
¢þ
>WENV180746340
ODHM01073753
[ODHM] human metagenome; G_DNA_Buccal mucosa
89
171
+
Tyr
GTA
[ENA]
¢þ
>WENV180759437
ODHY01013505
[ODHY] human metagenome; G_DNA_Buccal mucosa
535
453
-
Tyr
GTA
[ENA]
¢þ
>WENV180759444
ODHY01014413
[ODHY] human metagenome; G_DNA_Buccal mucosa
142
225
+
Tyr
GTA
[ENA]
¢þ
>WENV180765856
ODID01003169
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
983
900
-
Tyr
GTA
[ENA]
¢þ
>WENV180772988
ODII01000027
[ODII] human metagenome; G_DNA_Buccal mucosa
21379
21296
-
Tyr
GTA
[ENA]
¢þ
>WENV180864920
ODLI01001468
[ODLI] human metagenome; G_DNA_Buccal mucosa
702
619
-
Tyr
GTA
[ENA]
¢þ
>WENV180882112
ODMB01014165
[ODMB] human metagenome; G_DNA_Buccal mucosa
292
209
-
Tyr
GTA
[ENA]
¢þ
>WENV180913235
ODST01000063
[ODST] human metagenome; G_DNA_Attached/Keratinized gingiva
32347
32265
-
Tyr
GTA
[ENA]
¢þ
>WENV180930374
ODTO01016703
[ODTO] human metagenome; G_DNA_Buccal mucosa
204
122
-
Tyr
GTA
[ENA]
¢þ
>WENV180937178
ODTV01022829
[ODTV] human metagenome; G_DNA_Buccal mucosa
332
414
+
Tyr
GTA
[ENA]
¢þ
>WENV180979633
ODVC01000473
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
22724
22642
-
Tyr
GTA
[ENA]
¢þ
>WENV180992079
ODVO01036903
[ODVO] human metagenome; G_DNA_Buccal mucosa
139
56
-
Tyr
GTA
[ENA]
¢þ
>WENV181025407
ODXB01000242
[ODXB] human metagenome; G_DNA_Buccal mucosa
332
414
+
Tyr
GTA
[ENA]
¢þ
>WENV181025460
ODXB01000899
[ODXB] human metagenome; G_DNA_Buccal mucosa
1903
1986
+
Tyr
GTA
[ENA]
¢þ
>WENV181043109
ODXU01044754
[ODXU] human metagenome; G_DNA_Buccal mucosa
278
196
-
Tyr
GTA
[ENA]
¢þ
>WENV181065332
ODYT01001201
[ODYT] human metagenome; G_DNA_Buccal mucosa
4339
4256
-
Tyr
GTA
[ENA]
¢þ
>WENV181144149
OEHM01131051
[OEHM] human metagenome; G_DNA_Supragingival plaque
151
69
-
Tyr
GTA
[ENA]
¢þ
>WENV181157249
OEIG01001193
[OEIG] human metagenome; G_DNA_Hard palate
5598
5515
-
Tyr
GTA
[ENA]
¢þ
>W141277195
JAEK01000042
Bacillota
Bacillus sp. J37 [JAEK]
44579
44496
-
Tyr
GTA
[ENA]
¡û
>W141277219
JAEK01000086
Bacillota
Bacillus sp. J37 [JAEK]
2144
2061
-
Tyr
GTA
[ENA]
¡û
>W141277235
JAEK01000090
Bacillota
Bacillus sp. J37 [JAEK]
1356
1439
+
Tyr
GTA
[ENA]
¡û
>W141289355
JAQV01000004
Bacillota
Bacillus sp. SJS [JAQV]
404724
404641
-
Tyr
GTA
[ENA]
¡û
>C191098565
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
396212
396295
+
Tyr
GTA
-
¡û
>C191098598
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
4337624
4337707
+
Tyr
GTA
-
¡û
>C191098632
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
4690287
4690370
+
Tyr
GTA
-
¡û
>C191098649
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
4739626
4739709
+
Tyr
GTA
-
¡û
>C191098691
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
2337009
2336926
-
Tyr
GTA
-
¡û
>C191211380
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
1341482
1341565
+
Tyr
GTA
-
¡û
>W1910549413
FZPG01000014
Bacillota
Bacillus sp. OK838 [FZPG]
906
989
+
Tyr
GTA
[ENA]
¡û
>W1910899900
NGKB01000007
Bacillota
Vagococcus carniphilus SS1714 [NGKB]
123188
123106
-
Tyr
GTA
[ENA]
¡û
>W1911298426
NTTZ01000008
Bacillota
Bacillus sp. AFS017274 [NTTZ]
832
915
+
Tyr
GTA
[ENA]
¡û
>W1911301575
NTVS01000094
Bacillota
Bacillus thuringiensis AFS011939 [NTVS]
283
200
-
Tyr
GTA
[ENA]
¡û
>W1911331228
NUMC01000193
Bacillota
Bacillus sp. AFS040349 [NUMC]
545
462
-
Tyr
GTA
[ENA]
¡û
>W1911331256
NUMC01000228
Bacillota
Bacillus sp. AFS040349 [NUMC]
85
2
-
Tyr
GTA
[ENA]
¡û
>W1911349250
NUWA01000068
Bacillota
Bacillus thuringiensis AFS085011 [NUWA]
271
188
-
Tyr
GTA
[ENA]
¡û
>W1911360521
NVCC01000069
Bacillota
Bacillus thuringiensis AFS071454 [NVCC]
283
200
-
Tyr
GTA
[ENA]
¡û
>W1911363227
NVDP01000037
Bacillota
Bacillus anthracis AFS060304 [NVDP]
279
196
-
Tyr
GTA
[ENA]
¡û
>W1911702159
QNXC01000235
Bacillota
Lactobacillus helveticus TJA10 [QNXC]
221
138
-
Tyr
GTA
[ENA]
¡û
>W1810115840
PHNG01000653
Bacillota
Bacillus sp. mrc49 [PHNG]
1185
1268
+
Tyr
GTA
[ENA]
¡û
>W1810115881
PHNG01000754
Bacillota
Bacillus sp. mrc49 [PHNG]
12309
12226
-
Tyr
GTA
[ENA]
¡û
>W1810120832
PHTX01000001
Bacillota
Viridibacillus sp. OK051 [PHTX]
2078303
2078386
+
Tyr
GTA
[ENA]
¡û
>W1810154747
PIZR01000002
Bacillota
Bacillus sp. BA3 [PIZR]
1439020
1438937
-
Tyr
GTA
[ENA]
¡û
>W1810591600
QFVS01000002
Bacillota
Kurthia zopfii ATCC 33403 [QFVS]
124906
124823
-
Tyr
GTA
[ENA]
¡û
>W10103611
ACRF01000017
Bacillota
Granulicatella elegans ATCC 700633 [ACRF]
28731
28649
-
Tyr
GTA
[ENA]
¡û
>W10103637
ACRF01000025
Bacillota
Granulicatella elegans ATCC 700633 [ACRF]
122366
122283
-
Tyr
GTA
[ENA]
¡û
>W11103819
ACRF01000017
Bacillota
Granulicatella elegans ATCC 700633 [ACRF]
28731
28649
-
Tyr
GTA
[ENA]
¡û
>W11103845
ACRF01000025
Bacillota
Granulicatella elegans ATCC 700633 [ACRF]
122366
122283
-
Tyr
GTA
[ENA]
¡û
>W11103936
ACRH01000025
Bacillota
Staphylococcus capitis C87 [ACRH]
763
680
-
Tyr
GTA
[ENA]
¡û
>W1511583557
LATZ01000013
Bacillota
Bacillus sp. SA1-12 [LATZ]
86802
86719
-
Tyr
GTA
[ENA]
¡û
>W1511583583
LATZ01000024
Bacillota
Bacillus sp. SA1-12 [LATZ]
75730
75647
-
Tyr
GTA
[ENA]
¡û
>W1511583646
LATZ01000131
Bacillota
Bacillus sp. SA1-12 [LATZ]
249372
249289
-
Tyr
GTA
[ENA]
¡û
>W1511693497
LFZW01000001
Bacillota
Peribacillus loiseleuriae FJAT-27997 [LFZW]
148041
148124
+
Tyr
GTA
[ENA]
¡û
>W1610586274
LDGI01000003
Bacillota
Peribacillus muralis G25-68 [LDGI]
18403
18320
-
Tyr
GTA
[ENA]
¡û
>W1610586287
LDGI01000010
Bacillota
Peribacillus muralis G25-68 [LDGI]
33234
33151
-
Tyr
GTA
[ENA]
¡û
>W1610764509
LNNH01000043
Bacillota
Peribacillus simplex [LNNH]
106946
106863
-
Tyr
GTA
[ENA]
¡û
>W1610764536
LNNH01000046
Bacillota
Peribacillus simplex [LNNH]
29671
29588
-
Tyr
GTA
[ENA]
¡û
>W1610979060
LVZN01000012
Bacillota
Erysipelotrichaceae bacterium MTC7 [LVZN]
81396
81313
-
Tyr
GTA
[ENA]
¡û
>W1610992517
LWSG01000014
Bacillota
Metabacillus litoralis [LWSG]
74278
74195
-
Tyr
GTA
[ENA]
¡û
>W1610992549
LWSG01000024
Bacillota
Metabacillus litoralis [LWSG]
34500
34417
-
Tyr
GTA
[ENA]
¡û
>W1610992565
LWSG01000034
Bacillota
Metabacillus litoralis [LWSG]
343416
343333
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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