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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115927 (102 seq.)
>W1711088669
LSZB01000475
Bacillota
Clostridium haemolyticum [LSZB]
6391
6308
-
Leu
TAG
[ENA]
¡û
>W1711088684
LSZB01000503
Bacillota
Clostridium haemolyticum [LSZB]
680
763
+
Leu
TAG
[ENA]
¡û
>W1711272759
LZFO01000013
Bacillota
Clostridium acetireducens DSM 10703 [LZFO]
42605
42688
+
Leu
TAG
[ENA]
¡û
>W1711272766
LZFO01000013
Bacillota
Clostridium acetireducens DSM 10703 [LZFO]
43216
43299
+
Leu
TAG
[ENA]
¡û
>W131082862
ANZB01000023
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
8674
8591
-
Leu
TAG
[ENA]
¡û
>W131082823
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
154491
154574
+
Leu
TAG
[ENA]
¡û
>W131082830
ANZB01000009
Bacillota
Clostridium pasteurianum DSM 525 [ANZB]
155198
155281
+
Leu
TAG
[ENA]
¡û
>W1711774259
MVIY01000096
Bacillota
Clostridium botulinum D/C [MVIY]
5968
5885
-
Leu
TAG
[ENA]
¡û
>W1711774287
MVIZ01000064
Bacillota
Clostridium botulinum D/C [MVIZ]
298
381
+
Leu
TAG
[ENA]
¡û
>W1711774326
MVJA01000044
Bacillota
Clostridium botulinum D/C [MVJA]
142
225
+
Leu
TAG
[ENA]
¡û
>W1711774361
MVJA01000103
Bacillota
Clostridium botulinum D/C [MVJA]
5967
5884
-
Leu
TAG
[ENA]
¡û
>W1711774404
MVJB01000077
Bacillota
Clostridium botulinum D/C [MVJB]
113
196
+
Leu
TAG
[ENA]
¡û
>W1711774463
MVJC01000114
Bacillota
Clostridium botulinum D/C [MVJC]
117
200
+
Leu
TAG
[ENA]
¡û
>C171019438
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
74148
74231
+
Leu
TAG
-
¡û
>C171019452
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1454499
1454582
+
Leu
TAG
-
¡û
>C171019459
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
1455206
1455289
+
Leu
TAG
-
¡û
>C171019517
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
74148
74231
+
Leu
TAG
-
¡û
>C171019531
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1453534
1453617
+
Leu
TAG
-
¡û
>C171019538
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
1454241
1454324
+
Leu
TAG
-
¡û
>C006251
CP000382
Bacillota
Clostridium novyi NT [CP000382]
2498059
2497976
-
Leu
TAG
[Ensembl]
¡û
>C006273
CP000382
Bacillota
Clostridium novyi NT [CP000382]
2099677
2099594
-
Leu
TAG
[Ensembl]
¡û
>WENV180168429
OAVR01000049
[OAVR] human gut metagenome; faeces
238
155
-
Leu
TAG
[ENA]
¢þ
>WENV180556788
OCJT01000677
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
5376
5293
-
Leu
TAG
[ENA]
¢þ
>WENV180559846
OCKD01000394
[OCKD] human gut metagenome; Infant 2 DOL 27 gut
161
244
+
Leu
TAG
[ENA]
¢þ
>W08001231
ABDQ01000002
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
291482
291565
+
Leu
TAG
[ENA]
¡û
>W08001279
ABDQ01000023
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
16321
16404
+
Leu
TAG
[ENA]
¡û
>WENV181798336
OGRV01000039
[OGRV] human gut metagenome; fecal sample 3 from infant 4
142
59
-
Leu
TAG
[ENA]
¢þ
>WENV181805839
OGSJ01000794
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
13208
13291
+
Leu
TAG
[ENA]
¢þ
>WENV182844208
OKIQ01004983
[OKIQ] human gut metagenome; human gut
142
59
-
Leu
TAG
[ENA]
¢þ
>WENV182961405
OKWK01005700
[OKWK] human gut metagenome; stool
442
359
-
Leu
TAG
[ENA]
¢þ
>W141427412
JENK01000026
Bacillota
Clostridium novyi A str. NCTC 538 [JENK]
10231
10148
-
Leu
TAG
[ENA]
¡û
>W141427452
JENK01000056
Bacillota
Clostridium novyi A str. NCTC 538 [JENK]
5739
5656
-
Leu
TAG
[ENA]
¡û
>W141427589
JENM01000067
Bacillota
Clostridium novyi A str. BKT29909 [JENM]
5969
5886
-
Leu
TAG
[ENA]
¡û
>W141427657
JENN01000078
Bacillota
Clostridium novyi A str. GD211209 [JENN]
5738
5655
-
Leu
TAG
[ENA]
¡û
>W141427722
JENO01000058
Bacillota
Clostridium botulinum C/D str. It1 [JENO]
5768
5685
-
Leu
TAG
[ENA]
¡û
>W141427762
JENP01000007
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
18252
18169
-
Leu
TAG
[ENA]
¡û
>W141427803
JENP01000065
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
5746
5663
-
Leu
TAG
[ENA]
¡û
>W141427851
JENQ01000087
Bacillota
Clostridium botulinum C/D str. Sp77 [JENQ]
6137
6054
-
Leu
TAG
[ENA]
¡û
>W141427916
JENR01000035
Bacillota
Clostridium botulinum D str. 16868 [JENR]
58952
59035
+
Leu
TAG
[ENA]
¡û
>W141427954
JENR01000099
Bacillota
Clostridium botulinum D str. 16868 [JENR]
435
518
+
Leu
TAG
[ENA]
¡û
>W141427969
JENS01000040
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
6720
6637
-
Leu
TAG
[ENA]
¡û
>W141427998
JENS01000088
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
250
333
+
Leu
TAG
[ENA]
¡û
>W141428073
JENT01000090
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
6497
6414
-
Leu
TAG
[ENA]
¡û
>W141428101
JENT01000123
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
64577
64494
-
Leu
TAG
[ENA]
¡û
>W141428149
JENU01000017
Bacillota
Clostridium sp. K25 [JENU]
408
491
+
Leu
TAG
[ENA]
¡û
>W141428162
JENU01000032
Bacillota
Clostridium sp. K25 [JENU]
38996
38913
-
Leu
TAG
[ENA]
¡û
>W141428232
JENV01000006
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
544
627
+
Leu
TAG
[ENA]
¡û
>W141428251
JENV01000020
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
682
765
+
Leu
TAG
[ENA]
¡û
>W141428346
JENW01000043
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
210
127
-
Leu
TAG
[ENA]
¡û
>W141428392
JENW01000134
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
414
497
+
Leu
TAG
[ENA]
¡û
>W141428431
JENX01000056
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
391
474
+
Leu
TAG
[ENA]
¡û
>W141428459
JENX01000105
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
145
228
+
Leu
TAG
[ENA]
¡û
>C181162267
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
2942984
2942901
-
Leu
TAG
-
¡û
>C181226473
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
2037252
2037169
-
Leu
TAG
-
¡û
>C181226485
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
2036171
2036088
-
Leu
TAG
-
¡û
>C191063909
CP029458
Bacillota
Clostridium novyi 150557 [CP029458]
879783
879866
+
Leu
TAG
-
¡û
>C191063931
CP029458
Bacillota
Clostridium novyi 150557 [CP029458]
1207481
1207564
+
Leu
TAG
-
¡û
>W09134470
ACSJ01000001
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
296210
296293
+
Leu
TAG
[ENA]
¡û
>W09134533
ACSJ01000008
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
25236
25319
+
Leu
TAG
[ENA]
¡û
>W141803752
JPGY01000001
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
14322
14405
+
Leu
TAG
[ENA]
¡û
>W141803770
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
106580
106497
-
Leu
TAG
[ENA]
¡û
>W141803777
JPGY01000007
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
105873
105790
-
Leu
TAG
[ENA]
¡û
>W1910129107
BHYK01000006
Bacillota
Clostridium tagluense A121 [BHYK]
167831
167748
-
Leu
TAG
[ENA]
¡û
>W1910129117
BHYK01000006
Bacillota
Clostridium tagluense A121 [BHYK]
166917
166834
-
Leu
TAG
[ENA]
¡û
>W1910483249
FXLO01000004
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
26731
26814
+
Leu
TAG
[ENA]
¡û
>W1910483283
FXLO01000008
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
365365
365448
+
Leu
TAG
[ENA]
¡û
>W1810179813
PJSV01000006
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
83179
83262
+
Leu
TAG
[ENA]
¡û
>W1810180623
PJTF01000013
Bacillota
Clostridium perfringens 96-7415 [PJTF]
83203
83286
+
Leu
TAG
[ENA]
¡û
>W1810180943
PJTJ01000016
Bacillota
Clostridium perfringens T3381 [PJTJ]
49234
49317
+
Leu
TAG
[ENA]
¡û
>W1810367515
PVXP01000001
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
78015
77932
-
Leu
TAG
[ENA]
¡û
>C151047014
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
74148
74231
+
Leu
TAG
[Ensembl]
¡û
>C151047028
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1453538
1453621
+
Leu
TAG
[Ensembl]
¡û
>C151047035
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
1454245
1454328
+
Leu
TAG
[Ensembl]
¡û
>C151047093
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
74148
74231
+
Leu
TAG
[Ensembl]
¡û
>C151047107
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1453538
1453621
+
Leu
TAG
[Ensembl]
¡û
>C151047114
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
1454245
1454328
+
Leu
TAG
[Ensembl]
¡û
>C11104920
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
2732376
2732293
-
Leu
TAG
[Ensembl]
¡û
>C11104942
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
2351777
2351694
-
Leu
TAG
[Ensembl]
¡û
>W1510647801
CVPI01000007
Bacillota
Clostridium niameyense mt5 [CVPI]
230
313
+
Leu
TAG
[ENA]
¡û
>W1510882139
JDRX01000047
Bacillota
Clostridium novyi A str. 4570 [JDRX]
6126
6043
-
Leu
TAG
[ENA]
¡û
>W1510909036
JENJ01000087
Bacillota
Clostridium novyi A str. 4552 [JENJ]
93
176
+
Leu
TAG
[ENA]
¡û
>W1510909053
JENJ01000115
Bacillota
Clostridium novyi A str. 4552 [JENJ]
85
2
-
Leu
TAG
[ENA]
¡û
>W11146161
AESB01000115
Bacillota
Clostridium botulinum BKT028387 [AESB]
5949
5866
-
Leu
TAG
[ENA]
¡û
>W11146197
AESC01000013
Bacillota
Clostridium botulinum V891 [AESC]
32329
32412
+
Leu
TAG
[ENA]
¡û
>W11146235
AESC01000142
Bacillota
Clostridium botulinum V891 [AESC]
249
332
+
Leu
TAG
[ENA]
¡û
>W1511707698
LGVP01000038
Bacillota
Clostridium botulinum 29401-CD [LGVP]
6141
6058
-
Leu
TAG
[ENA]
¡û
>W121123996
BAEV01000014
Bacillota
Clostridium arbusti SL206 [BAEV]
40712
40629
-
Leu
TAG
[ENA]
¡û
>W121124003
BAEV01000014
Bacillota
Clostridium arbusti SL206 [BAEV]
40080
39997
-
Leu
TAG
[ENA]
¡û
>W121124042
BAEV01000156
Bacillota
Clostridium arbusti SL206 [BAEV]
169
252
+
Leu
TAG
[ENA]
¡û
>C131002495
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
105690
105773
+
Leu
TAG
[Ensembl]
¡û
>C131002513
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
1524778
1524861
+
Leu
TAG
[Ensembl]
¡û
>C131002520
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
1525421
1525504
+
Leu
TAG
[Ensembl]
¡û
>W1710521492
FNGL01000002
Bacillota
Clostridium cochlearium [FNGL]
145042
145125
+
Leu
TAG
[ENA]
¡û
>W1710586721
FQXL01000004
Bacillota
Clostridium magnum DSM 2767 [FQXL]
332609
332526
-
Leu
TAG
[ENA]
¡û
>W1710586740
FQXL01000007
Bacillota
Clostridium magnum DSM 2767 [FQXL]
73274
73357
+
Leu
TAG
[ENA]
¡û
>W1710586749
FQXL01000024
Bacillota
Clostridium magnum DSM 2767 [FQXL]
103131
103048
-
Leu
TAG
[ENA]
¡û
>W1710586774
FQXL01000045
Bacillota
Clostridium magnum DSM 2767 [FQXL]
15889
15806
-
Leu
TAG
[ENA]
¡û
>W1710605730
FWXH01000002
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
1021970
1021887
-
Leu
TAG
[ENA]
¡û
>W1710605765
FWXH01000020
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
45906
45989
+
Leu
TAG
[ENA]
¡û
>W1710605787
FWXH01000046
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
9091
9008
-
Leu
TAG
[ENA]
¡û
>W1710754968
LHYV01000028
Bacillota
Clostridium botulinum [LHYV]
119
202
+
Leu
TAG
[ENA]
¡û
>W1710755054
LHYX01000078
Bacillota
Clostridium botulinum [LHYX]
424
507
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK