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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116158 (30 seq.)
>W1711510588
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
5238
5321
+
Tyr
GTA
[ENA]
¡û
>W1711926248
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
5947
6030
+
Tyr
GTA
[ENA]
¡û
>W1711932734
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
1843
1760
-
Tyr
GTA
[ENA]
¡û
>W1711932766
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
183824
183907
+
Tyr
GTA
[ENA]
¡û
>WENV180257554
OBEQ010920784
[OBEQ] groundwater metagenome; groundwater
403
486
+
Tyr
GTA
[ENA]
¢þ
>WENV180270302
OBEQ012155139
[OBEQ] groundwater metagenome; groundwater
56
139
+
Tyr
GTA
[ENA]
¢þ
>WENV183673195
ORJL011253998
[ORJL] groundwater metagenome; groundwater
4128
4211
+
Tyr
GTA
[ENA]
¢þ
>WENV170658855
JUEG02001262
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
2473
2390
-
Tyr
GTA
[ENA]
¢þ
>WENV170658868
JUEG02001270
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
223057
222974
-
Tyr
GTA
[ENA]
¢þ
>WENV170658886
JUEG02001293
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
21914
21997
+
Tyr
GTA
[ENA]
¢þ
>WENV170784324
MCHG01000828
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
4836
4919
+
Tyr
GTA
[ENA]
¢þ
>W1810047155
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
4569
4652
+
Tyr
GTA
[ENA]
¡û
>C151016330
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2174826
2174743
-
Tyr
GTA
[Ensembl]
¡û
>C151016344
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2173069
2172986
-
Tyr
GTA
[Ensembl]
¡û
>W1511187145
JMGA01000078
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
21731
21814
+
Tyr
GTA
[ENA]
¡û
>W1511187158
JMGA01000080
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
514
597
+
Tyr
GTA
[ENA]
¡û
>W1511533695
JYNH01000154
Bacillota
Desulfosporosinus sp. I2 [JYNH]
9129
9212
+
Tyr
GTA
[ENA]
¡û
>W1511645991
LDZY01000001
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
70669
70586
-
Tyr
GTA
[ENA]
¡û
>W1511646038
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
4708
4791
+
Tyr
GTA
[ENA]
¡û
>W11177282
AGAF01000218
Bacillota
Desulfosporosinus sp. OT [AGAF]
185
268
+
Tyr
GTA
[ENA]
¡û
>W11177294
AGAF01000251
Bacillota
Desulfosporosinus sp. OT [AGAF]
1910
1827
-
Tyr
GTA
[ENA]
¡û
>W11181427
AGJB01000029
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
1549
1466
-
Tyr
GTA
[ENA]
¡û
>C121014769
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
101902
101985
+
Tyr
GTA
[Ensembl]
¡û
>C121014820
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3015333
3015250
-
Tyr
GTA
[Ensembl]
¡û
>C121014845
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
103243
103326
+
Tyr
GTA
[Ensembl]
¡û
>C121014894
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
2883470
2883387
-
Tyr
GTA
[Ensembl]
¡û
>W121010470
AGJG01000012
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
64621
64538
-
Tyr
GTA
[ENA]
¡û
>W121010488
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
3019
3102
+
Tyr
GTA
[ENA]
¡û
>W1710586649
FQXJ01000018
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
28734
28817
+
Tyr
GTA
[ENA]
¡û
>W1710586668
FQXJ01000032
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
40234
40317
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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