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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116846 (112 seq.)
>W1710857554
LMAJ01000004
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
31085
31169
+
Ser
GCT
[ENA]
¡û
>W1710862232
LMEF01000030
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
207372
207456
+
Ser
GCT
[ENA]
¡û
>W1710866915
LMHW01000010
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
1092426
1092510
+
Ser
GCT
[ENA]
¡û
>W1710868410
LMJB01000001
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
334109
334025
-
Ser
GCT
[ENA]
¡û
>W1710868880
LMJL01000008
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
825761
825677
-
Ser
GCT
[ENA]
¡û
>W1710872503
LMMA01000023
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
289451
289367
-
Ser
GCT
[ENA]
¡û
>W1711088282
LSYT01000004
Bacteroidota
Flavobacterium chilense [LSYT]
107122
107038
-
Ser
GCT
[ENA]
¡û
>W1711138922
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
113638
113554
-
Ser
GCT
[ENA]
¡û
>W1711431897
MIKE01000023
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
11911
11827
-
Ser
GCT
[ENA]
¡û
>W131052319
AMYW01000007
Bacteroidota
Flavobacterium sp. WG21 [AMYW]
18319
18235
-
Ser
GCT
[ENA]
¡û
>W131225281
AUDL01000007
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
137086
137002
-
Ser
GCT
[ENA]
¡û
>W131226964
AUEU01000002
Bacteroidota
Flavobacterium sp. URHB0058 [AUEU]
14779
14695
-
Ser
GCT
[ENA]
¡û
>W1711513089
MLFK01000013
Bacteroidota
Flavobacterium johnsoniae [MLFK]
75746
75662
-
Ser
GCT
[ENA]
¡û
>W1711744077
MUFX01000004
Bacteroidota
Flavobacterium sp. LM5 [MUFX]
336960
336874
-
Ser
GCT
[ENA]
¡û
>W1711748536
MULJ01000001
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
317228
317144
-
Ser
GCT
[ENA]
¡û
>C171053200
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
3350666
3350750
+
Ser
GCT
-
¡û
>C171067639
CP017774
Bacteroidota
Flavobacterium commune PK15 [CP017774]
3745161
3745077
-
Ser
GCT
-
¡û
>C009424
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
5576243
5576160
-
Ser
GCT
[Ensembl]
¡û
>W141093451
AVBI01000019
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
80480
80564
+
Ser
GCT
[ENA]
¡û
>W141096678
AVFO01000030
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
256462
256378
-
Ser
GCT
[ENA]
¡û
>W141097128
AVGG01000007
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
47291
47207
-
Ser
GCT
[ENA]
¡û
>W141289778
JARP01000006
Bacteroidota
Flavobacterium sp. KJJ [JARP]
184476
184560
+
Ser
GCT
[ENA]
¡û
>W141291938
JATV01000010
Bacteroidota
Flavobacterium succinicans LMG 10402 [JATV]
185110
185024
-
Ser
GCT
[ENA]
¡û
>WENV183726737
PJTO01000111
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
87617
87533
-
Ser
GCT
[ENA]
¢þ
>WENV183729750
PJTR01000046
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
107894
107810
-
Ser
GCT
[ENA]
¢þ
>WENV183730706
PJTS01000369
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
14445
14361
-
Ser
GCT
[ENA]
¢þ
>WENV183731332
PJTS01039420
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
88
4
-
Ser
GCT
[ENA]
¢þ
>WENV183731549
PJTT01000019
[PJTT] soil metagenome; Soil (2) enriched on wood chips
242892
242808
-
Ser
GCT
[ENA]
¢þ
>WENV183734784
PJUA01000011
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
245235
245319
+
Ser
GCT
[ENA]
¢þ
>WENV183736065
PJUC01000012
[PJUC] soil metagenome; Soil enriched on filter paper
245235
245319
+
Ser
GCT
[ENA]
¢þ
>WENV170022678
BCQK01035236
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
523
607
+
Ser
GCT
[ENA]
¢þ
>WENV171003829
NNBV01001546
[NNBV] plant metagenome; symbiotic tissue sample KVS11
8602
8518
-
Ser
GCT
[ENA]
¢þ
>C181176635
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
5330770
5330686
-
Ser
GCT
-
¡û
>C181190997
CP030261
Bacteroidota
Flavobacterium fluviale HYN0086 [CP030261]
4388920
4388836
-
Ser
GCT
-
¡û
>C191025468
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
3843197
3843113
-
Ser
GCT
-
¡û
>W141726677
JNCA01000013
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
108911
108827
-
Ser
GCT
[ENA]
¡û
>W141809336
JPRL01000001
Bacteroidota
Flavobacterium reichenbachii [JPRL]
1764922
1765006
+
Ser
GCT
[ENA]
¡û
>W141809401
JPRM01000013
Bacteroidota
Flavobacterium hydatis [JPRM]
117885
117969
+
Ser
GCT
[ENA]
¡û
>W141816548
JQJY01000003
Bacteroidota
Flavobacterium sp. ASV13 Fl [JQJY]
102431
102347
-
Ser
GCT
[ENA]
¡û
>W1910183307
BJNP01000027
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
53579
53663
+
Ser
GCT
[ENA]
¡û
>W1910547026
FZNL01000012
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
176577
176661
+
Ser
GCT
[ENA]
¡û
>W1910577890
JUIV01000001
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
567401
567485
+
Ser
GCT
[ENA]
¡û
>W1910792783
MRCM01000013
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
66006
66090
+
Ser
GCT
[ENA]
¡û
>W1910792980
MRCQ01000002
Bacteroidota
Flavobacterium sp. ACN6 [MRCQ]
11287
11203
-
Ser
GCT
[ENA]
¡û
>W1910805341
MTQF01000004
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
219940
219856
-
Ser
GCT
[ENA]
¡û
>W1910808840
MUGR01000020
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
37207
37291
+
Ser
GCT
[ENA]
¡û
>W1910808896
MUGS01000029
Bacteroidota
Flavobacterium araucananum DSM 24704 [MUGS]
79243
79159
-
Ser
GCT
[ENA]
¡û
>W1910809029
MUGV01000013
Bacteroidota
Flavobacterium frigidimaris DSM 15937 [MUGV]
77059
76975
-
Ser
GCT
[ENA]
¡û
>W1910809166
MUGX01000035
Bacteroidota
Flavobacterium hibernum ATCC 51468 [MUGX]
102624
102540
-
Ser
GCT
[ENA]
¡û
>W1910809195
MUGY01000009
Bacteroidota
Flavobacterium hydatis ATCC 29551 [MUGY]
144772
144856
+
Ser
GCT
[ENA]
¡û
>W1910809264
MUGZ01000011
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
357627
357543
-
Ser
GCT
[ENA]
¡û
>W1910809288
MUHA01000004
Bacteroidota
Flavobacterium oncorhynchi CCUG 59446 [MUHA]
45266
45350
+
Ser
GCT
[ENA]
¡û
>W1910809366
MUHB01000017
Bacteroidota
Flavobacterium pectinovorum ATCC 19366 [MUHB]
53561
53645
+
Ser
GCT
[ENA]
¡û
>W1910809425
MUHC01000064
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
3825
3741
-
Ser
GCT
[ENA]
¡û
>W1910809477
MUHD01000043
Bacteroidota
Flavobacterium plurextorum CCUG 60112 [MUHD]
59826
59910
+
Ser
GCT
[ENA]
¡û
>W1910809533
MUHF01000002
Bacteroidota
Flavobacterium reichenbachii DSM 21791 [MUHF]
133772
133856
+
Ser
GCT
[ENA]
¡û
>W1910809621
MUHG01000035
Bacteroidota
Flavobacterium tructae ATCC BAA-2541 [MUHG]
11054
10970
-
Ser
GCT
[ENA]
¡û
>W1910809674
MUHH01000044
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
11430
11346
-
Ser
GCT
[ENA]
¡û
>W1911218550
NRQU01000037
Bacteroidota
Flavobacterium sp. YO12 [NRQU]
44348
44432
+
Ser
GCT
[ENA]
¡û
>W1911218594
NRQV01000017
Bacteroidota
Flavobacterium sp. YO64 [NRQV]
42956
42872
-
Ser
GCT
[ENA]
¡û
>W1911747550
QWDM01000007
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
135954
136038
+
Ser
GCT
[ENA]
¡û
>W1810072035
PEFC01000001
Bacteroidota
Flavobacterium sp. 2 [PEFC]
2512972
2512888
-
Ser
GCT
[ENA]
¡û
>W1810475393
QAIZ01000401
Bacteroidota
Flavobacterium sp. HMWF030 [QAIZ]
152
68
-
Ser
GCT
[ENA]
¡û
>W1810530610
QCWV01000007
Bacteroidota
Flavobacterium sp. WLB [QCWV]
21212
21128
-
Ser
GCT
[ENA]
¡û
>W1810580576
QETH01000072
Bacteroidota
Flavobacterium sp. HTF [QETH]
20160
20076
-
Ser
GCT
[ENA]
¡û
>W1810596059
QGGJ01000005
Bacteroidota
Flavobacterium araucananum DSM 24704 [QGGJ]
161248
161332
+
Ser
GCT
[ENA]
¡û
>W1810657133
QJGZ01000042
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
92243
92159
-
Ser
GCT
[ENA]
¡û
>W1810657743
QJHK01000007
Bacteroidota
Flavobacterium cheongpyeongense IMCC34759 [QJHK]
131207
131123
-
Ser
GCT
[ENA]
¡û
>W1810657780
QJHL01000001
Bacteroidota
Flavobacterium hydrophilum IMCC34758 [QJHL]
721994
722078
+
Ser
GCT
[ENA]
¡û
>W1810669711
QJRH01000068
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
86124
86040
-
Ser
GCT
[ENA]
¡û
>W1810669761
QJRI01000180
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
261650
261734
+
Ser
GCT
[ENA]
¡û
>W1810669796
QJRJ01000073
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
97946
97862
-
Ser
GCT
[ENA]
¡û
>W1810672650
QJTO01000003
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
419357
419441
+
Ser
GCT
[ENA]
¡û
>W1810676043
QKLS01000003
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
419356
419440
+
Ser
GCT
[ENA]
¡û
>W1810684404
QKXH01000007
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
189310
189394
+
Ser
GCT
[ENA]
¡û
>W1810787319
QRDQ01000009
Bacteroidota
Flavobacterium cutihirudinis DSM 25795 [QRDQ]
326204
326120
-
Ser
GCT
[ENA]
¡û
>W1810861161
QTTR01000003
Bacteroidota
Flavobacterium sp. GV028 [QTTR]
322703
322787
+
Ser
GCT
[ENA]
¡û
>W1810885447
QUNI01000004
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
287948
287864
-
Ser
GCT
[ENA]
¡û
>W1511312008
JPRK01000015
Bacteroidota
Flavobacterium hibernum DSM 12611 [JPRK]
988
904
-
Ser
GCT
[ENA]
¡û
>W1511508961
JXQR01000005
Bacteroidota
Flavobacterium sp. MEB061 [JXQR]
165
81
-
Ser
GCT
[ENA]
¡û
>W1511656850
LEKS01000002
Bacteroidota
Flavobacterium sp. ABG [LEKS]
198711
198627
-
Ser
GCT
[ENA]
¡û
>W121103546
AKZQ01000038
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
56290
56374
+
Ser
GCT
[ENA]
¡û
>W1610521448
JMTM01000017
Bacteroidota
Flavobacterium succinicans [JMTM]
483577
483491
-
Ser
GCT
[ENA]
¡û
>W1610534884
JRLF01000012
Bacteroidota
Flavobacterium aquidurense [JRLF]
585087
585171
+
Ser
GCT
[ENA]
¡û
>W1610534985
JRLU01000005
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
173581
173497
-
Ser
GCT
[ENA]
¡û
>W1610719935
LMAJ01000004
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
31085
31169
+
Ser
GCT
[ENA]
¡û
>W1610724578
LMEF01000030
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
207372
207456
+
Ser
GCT
[ENA]
¡û
>W1610729261
LMHW01000010
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
1092426
1092510
+
Ser
GCT
[ENA]
¡û
>W1610730756
LMJB01000001
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
334109
334025
-
Ser
GCT
[ENA]
¡û
>W1610731226
LMJL01000008
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
825761
825677
-
Ser
GCT
[ENA]
¡û
>W1610734849
LMMA01000023
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
289451
289367
-
Ser
GCT
[ENA]
¡û
>W1610922821
LSYT01000004
Bacteroidota
Flavobacterium chilense [LSYT]
107122
107038
-
Ser
GCT
[ENA]
¡û
>W1610949930
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
113638
113554
-
Ser
GCT
[ENA]
¡û
>W1710505776
FMTY01000002
Bacteroidota
Flavobacterium saliperosum [FMTY]
591257
591173
-
Ser
GCT
[ENA]
¡û
>W1710507240
FMVC01000004
Bacteroidota
Flavobacterium anhuiense [FMVC]
85336
85252
-
Ser
GCT
[ENA]
¡û
>W1710531653
FNPS01000002
Bacteroidota
Flavobacterium aquidurense [FNPS]
96612
96528
-
Ser
GCT
[ENA]
¡û
>W1710548007
FODK01000002
Bacteroidota
Flavobacterium sp. fv08 [FODK]
557179
557263
+
Ser
GCT
[ENA]
¡û
>W1710558990
FOMH01000003
Bacteroidota
Flavobacterium phragmitis [FOMH]
726
642
-
Ser
GCT
[ENA]
¡û
>W1710569856
FOUT01000006
Bacteroidota
Flavobacterium succinicans [FOUT]
202648
202562
-
Ser
GCT
[ENA]
¡û
>W1710585115
FQWC01000005
Bacteroidota
Flavobacterium defluvii [FQWC]
140947
140863
-
Ser
GCT
[ENA]
¡û
>W1710585279
FQWG01000008
Bacteroidota
Flavobacterium frigidimaris [FQWG]
97972
97888
-
Ser
GCT
[ENA]
¡û
>W1710585336
FQWH01000002
Bacteroidota
Flavobacterium johnsoniae [FQWH]
138018
137934
-
Ser
GCT
[ENA]
¡û
>W1710586058
FQWW01000003
Bacteroidota
Flavobacterium sp. CF108 [FQWW]
556983
557067
+
Ser
GCT
[ENA]
¡û
>W1710589920
FRAO01000003
Bacteroidota
Flavobacterium johnsoniae [FRAO]
544970
545054
+
Ser
GCT
[ENA]
¡û
>W1710591510
FRBT01000005
Bacteroidota
Flavobacterium chilense [FRBT]
302278
302362
+
Ser
GCT
[ENA]
¡û
>W1710591688
FRBX01000003
Bacteroidota
Flavobacterium pectinovorum [FRBX]
194992
194908
-
Ser
GCT
[ENA]
¡û
>W1710591737
FRBY01000003
Bacteroidota
Flavobacterium saccharophilum [FRBY]
226913
226829
-
Ser
GCT
[ENA]
¡û
>W1710591955
FRCC01000006
Bacteroidota
Flavobacterium flevense [FRCC]
134686
134770
+
Ser
GCT
[ENA]
¡û
>W1710620396
JMTM01000017
Bacteroidota
Flavobacterium succinicans [JMTM]
483577
483491
-
Ser
GCT
[ENA]
¡û
>W1710637120
JRLF01000012
Bacteroidota
Flavobacterium aquidurense [JRLF]
585087
585171
+
Ser
GCT
[ENA]
¡û
>W1710637221
JRLU01000005
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
173581
173497
-
Ser
GCT
[ENA]
¡û
>W1710756337
LIAC01000011
Bacteroidota
Flavobacterium sp. NLM [LIAC]
125255
125339
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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