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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.116949 (35 seq.)
>W1710861977
LMEB01000001
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
507278
507364
+
Leu
CAG
[ENA]
¡û
>W1710873831
LMNC01000003
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
234299
234385
+
Leu
CAG
[ENA]
¡û
>W1710876099
LMOY01000007
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
302207
302121
-
Leu
CAG
[ENA]
¡û
>W1711407962
MGLI01000144
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
2237
2323
+
Leu
CAG
[ENA]
¡û
>W1711408002
MGLN01000085
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
9631
9717
+
Leu
CAG
[ENA]
¡û
>W131052444
AMYY01000053
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
2991
2905
-
Leu
CAG
[ENA]
¡û
>WENV180878723
ODLX01016127
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
229
315
+
Leu
CAG
[ENA]
¢þ
>WENV181222985
OFDC01000946
[OFDC] hot springs metagenome; Water
15201
15287
+
Leu
CAG
[ENA]
¢þ
>WENV181384379
OFRI01000472
[OFRI] wastewater metagenome; Exp Tend VB 90WW
9809
9723
-
Leu
CAG
[ENA]
¢þ
>W08010816
ABRU01000017
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
16384
16470
+
Leu
CAG
[ENA]
¡û
>WENV170004265
AGTN01620683
[AGTN] bioreactor metagenome; poplar biomass
189
103
-
Leu
CAG
[ENA]
¢þ
>WENV170010792
APMI01029082
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
992
906
-
Leu
CAG
[ENA]
¢þ
>WENV170574126
FLYM01008387
[FLYM] hot springs metagenome; Sediment
2176
2090
-
Leu
CAG
[ENA]
¢þ
>WENV170593329
FUFK010860446
[FUFK] metagenome; unknown
599
513
-
Leu
CAG
[ENA]
¢þ
>WENV170658975
JUGB01004643
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
171
85
-
Leu
CAG
[ENA]
¢þ
>WENV170842754
MDSZ01247051
[MDSZ] marine metagenome; seawater
57914
58000
+
Leu
CAG
[ENA]
¢þ
>C181056232
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2203234
2203320
+
Leu
CAG
-
¡û
>C191159608
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
335390
335476
+
Leu
CAG
-
¡û
>C191166115
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2997547
2997461
-
Leu
CAG
-
¡û
>W141712467
JMQR01000208
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
55
141
+
Leu
CAG
[ENA]
¡û
>W1910725229
MGLJ01000439
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
161
75
-
Leu
CAG
[ENA]
¡û
>W1910725252
MGLK01000009
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
2663
2749
+
Leu
CAG
[ENA]
¡û
>W1910725279
MGLL01000012
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
2908
2822
-
Leu
CAG
[ENA]
¡û
>W1511489461
JWSY01000005
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
154675
154589
-
Leu
CAG
[ENA]
¡û
>W1511547863
JZRG01000005
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
53668
53754
+
Leu
CAG
[ENA]
¡û
>C161047054
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
3389464
3389378
-
Leu
CAG
[Ensembl]
¡û
>C161089114
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
3234254
3234340
+
Leu
CAG
[Ensembl]
¡û
>W1610074225
BCWM01000010
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
55773
55859
+
Leu
CAG
[ENA]
¡û
>W1610724323
LMEB01000001
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
507278
507364
+
Leu
CAG
[ENA]
¡û
>W1610736177
LMNC01000003
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
234299
234385
+
Leu
CAG
[ENA]
¡û
>W1610738445
LMOY01000007
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
302207
302121
-
Leu
CAG
[ENA]
¡û
>W1710071343
BCWM01000010
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
55773
55859
+
Leu
CAG
[ENA]
¡û
>W1710084626
BDMM01000003
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
440043
439957
-
Leu
CAG
[ENA]
¡û
>W1710527042
FNKT01000002
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
361745
361659
-
Leu
CAG
[ENA]
¡û
>W1710576196
FOZV01000008
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
25230
25316
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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