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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117769 (48 seq.)
>W1711212760
LXJO01000196
Gammaproteobacteria
Aeromonas caviae [LXJO]
256
172
-
Leu
CAA
[ENA]
¡û
>W1711371661
MDSC01000024
Gammaproteobacteria
Aeromonas caviae [MDSC]
26978
27062
+
Leu
CAA
[ENA]
¡û
>WENV180006362
FLRY01017898
[FLRY] metagenome; saliva
42
126
+
Leu
CAA
[ENA]
¢þ
>WENV180310728
OBJT01017826
[OBJT] soil metagenome; soil
993
1077
+
Leu
CAA
[ENA]
¢þ
>WENV181192844
OEPS011109736
[OEPS] soil metagenome; soil
93
9
-
Leu
CAA
[ENA]
¢þ
>W141234118
BAWK01000007
Gammaproteobacteria
Aeromonas taiwanensis [BAWK]
16078
16162
+
Leu
CAA
[ENA]
¡û
>WENV182833524
OKEV01000011
[OKEV] human gut metagenome; human gut
83036
83120
+
Leu
CAA
[ENA]
¢þ
>WENV182843705
OKIO01000007
[OKIO] human gut metagenome; human gut
82695
82779
+
Leu
CAA
[ENA]
¢þ
>W141426316
JEMK01000062
Gammaproteobacteria
Aeromonas hydrophila 145 [JEMK]
9124
9040
-
Leu
CAA
[ENA]
¡û
>C181121497
CP025705
Gammaproteobacteria
Aeromonas caviae R25-6 [CP025705]
1876086
1876170
+
Leu
CAA
-
¡û
>C181121672
CP025706
Gammaproteobacteria
Aeromonas caviae T25-39 [CP025706]
1207388
1207304
-
Leu
CAA
-
¡û
>C181122549
CP025777
Gammaproteobacteria
Aeromonas caviae R25-2 [CP025777]
4331781
4331865
+
Leu
CAA
-
¡û
>C181126314
CP026055
Gammaproteobacteria
Aeromonas caviae FDAARGOS_72 [CP026055]
2394931
2394847
-
Leu
CAA
-
¡û
>C181128169
CP026122
Gammaproteobacteria
Aeromonas sp. ASNIH5 [CP026122]
3660280
3660364
+
Leu
CAA
-
¡û
>C181129398
CP026222
Gammaproteobacteria
Aeromonas sp. ASNIH3 [CP026222]
4177196
4177112
-
Leu
CAA
-
¡û
>C181129569
CP026226
Gammaproteobacteria
Aeromonas sp. ASNIH7 [CP026226]
1523427
1523343
-
Leu
CAA
-
¡û
>C181129680
CP026228
Gammaproteobacteria
Aeromonas sp. ASNIH1 [CP026228]
971555
971471
-
Leu
CAA
-
¡û
>C181133545
CP026406
Gammaproteobacteria
Aeromonas sp. ASNIH2 [CP026406]
2786455
2786539
+
Leu
CAA
-
¡û
>C181213563
LS483441
Gammaproteobacteria
Aeromonas caviae NCTC12244 [LS483441]
4020067
4019983
-
Leu
CAA
-
¡û
>C191006839
AP019195
Gammaproteobacteria
Aeromonas caviae GSH8M-1 [AP019195]
524565
524649
+
Leu
CAA
-
¡û
>W141790429
JOVP01000002
Gammaproteobacteria
Aeromonas caviae [JOVP]
13781
13865
+
Leu
CAA
[ENA]
¡û
>W1910635045
LMUB01000003
Gammaproteobacteria
Aeromonas sp. ARM81 [LMUB]
179970
180054
+
Leu
CAA
[ENA]
¡û
>W1911420277
NXBP01000029
Gammaproteobacteria
Aeromonas caviae ZJ66-1 [NXBP]
46707
46791
+
Leu
CAA
[ENA]
¡û
>W1911420470
NXBR01000046
Gammaproteobacteria
Aeromonas caviae ZJ17-2 [NXBR]
33350
33434
+
Leu
CAA
[ENA]
¡û
>W1911420918
NXBW01000045
Gammaproteobacteria
Aeromonas caviae ZJ33-3 [NXBW]
33441
33525
+
Leu
CAA
[ENA]
¡û
>W1911550701
OVEM01000031
Gammaproteobacteria
Aeromonas caviae KLMC2 [OVEM]
26666
26750
+
Leu
CAA
[ENA]
¡û
>W1911550804
OVEN01000015
Gammaproteobacteria
Aeromonas caviae KLMC4 [OVEN]
6537
6453
-
Leu
CAA
[ENA]
¡û
>W1911621174
PQLN01000041
Gammaproteobacteria
Aeromonas sp. ASNIH8 [PQLN]
820
904
+
Leu
CAA
[ENA]
¡û
>W1911683270
QKOS01000075
Gammaproteobacteria
Aeromonas caviae GEO_48_Eff_A [QKOS]
2606
2522
-
Leu
CAA
[ENA]
¡û
>W1911683412
QKOU01000021
Gammaproteobacteria
Aeromonas caviae GEO_47_Up_A [QKOU]
50009
50093
+
Leu
CAA
[ENA]
¡û
>W1911683816
QKOZ01000007
Gammaproteobacteria
Aeromonas caviae GEO_39_Eff_A [QKOZ]
75643
75559
-
Leu
CAA
[ENA]
¡û
>W1911683942
QKPA01000014
Gammaproteobacteria
Aeromonas caviae GEO_37_Down_A [QKPA]
11649
11733
+
Leu
CAA
[ENA]
¡û
>W1911684513
QKPH01000003
Gammaproteobacteria
Aeromonas caviae GEO_23_Down_B [QKPH]
125010
125094
+
Leu
CAA
[ENA]
¡û
>W1911705612
QORJ01000005
Gammaproteobacteria
Aeromonas taiwanensis 186 [QORJ]
133103
133019
-
Leu
CAA
[ENA]
¡û
>W1911705705
QORK01000005
Gammaproteobacteria
Aeromonas taiwanensis 198 [QORK]
132939
132855
-
Leu
CAA
[ENA]
¡û
>W1911705791
QORL01000005
Gammaproteobacteria
Aeromonas taiwanensis 1713 [QORL]
132939
132855
-
Leu
CAA
[ENA]
¡û
>W1810338659
PUTR01000042
Gammaproteobacteria
Aeromonas caviae AFG_SD01_1510_Aca_091 [PUTR]
30984
31068
+
Leu
CAA
[ENA]
¡û
>W1810693057
QLLA01000008
Gammaproteobacteria
Aeromonas caviae HAMBI_1972 [QLLA]
130158
130074
-
Leu
CAA
[ENA]
¡û
>W1510064967
CDBK01000034
Gammaproteobacteria
Aeromonas caviae CECT 838 [CDBK]
128759
128675
-
Leu
CAA
[ENA]
¡û
>W1510065225
CDBN01000098
Gammaproteobacteria
Aeromonas sanarellii LMG 24682 [CDBN]
126560
126476
-
Leu
CAA
[ENA]
¡û
>W1510067753
CDDD01000101
Gammaproteobacteria
Aeromonas taiwanensis LMG 24683 [CDDD]
125793
125709
-
Leu
CAA
[ENA]
¡û
>W1511354541
JRQJ01000013
Gammaproteobacteria
Aeromonas sp. ZOR0002 [JRQJ]
196
112
-
Leu
CAA
[ENA]
¡û
>W1511395282
JTBK01000001
Gammaproteobacteria
Aeromonas caviae FDAARGOS_72 [JTBK]
2394460
2394376
-
Leu
CAA
[ENA]
¡û
>W1511481185
JWJP01000042
Gammaproteobacteria
Aeromonas caviae L12 [JWJP]
35776
35692
-
Leu
CAA
[ENA]
¡û
>W1511565282
LAFH01000015
Gammaproteobacteria
Aeromonas caviae 8LM [LAFH]
159619
159703
+
Leu
CAA
[ENA]
¡û
>W1511657824
LESK01000020
Gammaproteobacteria
Aeromonas caviae BWH65 [LESK]
11794
11878
+
Leu
CAA
[ENA]
¡û
>W1511690117
LFXO01000025
Gammaproteobacteria
Aeromonas caviae A23 [LFXO]
162515
162431
-
Leu
CAA
[ENA]
¡û
>W11185810
CACP01000021
Gammaproteobacteria
Aeromonas caviae Ae398 [CACP]
11738
11822
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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