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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117776 (23 seq.)
>WENV181217004
OFCH01000019
[OFCH] metagenome; Human gut stool
51717
51635
-
Leu
CAA
[ENA]
¢þ
>WENV181218560
OFCM01004603
[OFCM] metagenome; Human gut stool
374
292
-
Leu
CAA
[ENA]
¢þ
>WENV181220086
OFCQ01000055
[OFCQ] metagenome; Human gut stool
82938
82856
-
Leu
CAA
[ENA]
¢þ
>WENV181225724
OFDJ01000053
[OFDJ] metagenome; Human gut stool
60676
60594
-
Leu
CAA
[ENA]
¢þ
>WENV182401058
OIER01000234
[OIER] human gut metagenome; human gut
38373
38455
+
Leu
CAA
[ENA]
¢þ
>WENV182946858
OKVL01000163
[OKVL] human gut metagenome; human gut
13624
13542
-
Leu
CAA
[ENA]
¢þ
>WENV183772535
PPYF01017255
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1137
1219
+
Leu
CAA
[ENA]
¢þ
>C191208472
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1465599
1465681
+
Leu
CAA
-
¡û
>W1910343134
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
40574
40656
+
Leu
CAA
[ENA]
¡û
>W1910343223
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
17385
17303
-
Leu
CAA
[ENA]
¡û
>W1910343437
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
19817
19735
-
Leu
CAA
[ENA]
¡û
>C09102383
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1465804
1465888
+
Leu
CAA
-
¡û
>W1510059600
CCWN01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
5650
5734
+
Leu
CAA
[ENA]
¡û
>W1510059666
CCWO01000034
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
5779
5863
+
Leu
CAA
[ENA]
¡û
>W1510059733
CCWP01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
5101
5185
+
Leu
CAA
[ENA]
¡û
>W1510059800
CCWQ01000023
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
5778
5862
+
Leu
CAA
[ENA]
¡û
>W1510059866
CCWR01000018
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
40526
40610
+
Leu
CAA
[ENA]
¡û
>W1510059933
CCWS01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
40554
40638
+
Leu
CAA
[ENA]
¡û
>W1510060000
CCWT01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
40550
40634
+
Leu
CAA
[ENA]
¡û
>W1510060067
CCWU01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
40522
40606
+
Leu
CAA
[ENA]
¡û
>C11103162
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1465595
1465679
+
Leu
CAA
-
¡û
>C11103229
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1465595
1465679
+
Leu
CAA
-
¡û
>W1610518909
JDTT01000026
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
45579
45495
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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