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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117815 (93 seq.)
>W1710921730
LNZX01000022
Alphaproteobacteria
Bartonella henselae [LNZX]
16867
16783
-
Leu
CAG
[ENA]
¡û
>W1710921773
LNZY01000028
Alphaproteobacteria
Bartonella henselae [LNZY]
34624
34708
+
Leu
CAG
[ENA]
¡û
>W1710921797
LNZZ01000011
Alphaproteobacteria
Bartonella henselae [LNZZ]
35723
35807
+
Leu
CAG
[ENA]
¡û
>W1710921838
LOAA01000019
Alphaproteobacteria
Bartonella henselae [LOAA]
26196
26280
+
Leu
CAG
[ENA]
¡û
>W1710921881
LOAB01000018
Alphaproteobacteria
Bartonella henselae [LOAB]
26194
26278
+
Leu
CAG
[ENA]
¡û
>W1710921931
LOAC01000049
Alphaproteobacteria
Bartonella henselae [LOAC]
16880
16796
-
Leu
CAG
[ENA]
¡û
>W1710921971
LOAD01000042
Alphaproteobacteria
Bartonella henselae [LOAD]
227789
227873
+
Leu
CAG
[ENA]
¡û
>W1710922000
LOAE01000020
Alphaproteobacteria
Bartonella henselae [LOAE]
16934
16850
-
Leu
CAG
[ENA]
¡û
>W1710922033
LOAF01000012
Alphaproteobacteria
Bartonella henselae [LOAF]
16871
16787
-
Leu
CAG
[ENA]
¡û
>W1710922064
LOAG01000005
Alphaproteobacteria
Bartonella henselae [LOAG]
16871
16787
-
Leu
CAG
[ENA]
¡û
>W1710922101
LOAH01000007
Alphaproteobacteria
Bartonella henselae [LOAH]
16880
16796
-
Leu
CAG
[ENA]
¡û
>W1710922140
LOAI01000007
Alphaproteobacteria
Bartonella henselae [LOAI]
34231
34315
+
Leu
CAG
[ENA]
¡û
>W1710935920
LOKV01000023
Alphaproteobacteria
Rhizobium sp. R339 [LOKV]
207044
206960
-
Leu
CAG
[ENA]
¡û
>W1710936100
LOKZ01000008
Alphaproteobacteria
Rhizobium sp. R711 [LOKZ]
1101
1017
-
Leu
CAG
[ENA]
¡û
>W1710936147
LOLA01000008
Alphaproteobacteria
Rhizobium sp. R72 [LOLA]
1101
1017
-
Leu
CAG
[ENA]
¡û
>W1711034282
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
1190423
1190507
+
Leu
CAG
[ENA]
¡û
>W1711116167
LUAV01000002
Alphaproteobacteria
Ensifer aridi [LUAV]
200247
200331
+
Leu
CAG
[ENA]
¡û
>W1711766814
MUYW01000008
Alphaproteobacteria
Bartonella taylorii [MUYW]
27301
27385
+
Leu
CAG
[ENA]
¡û
>C171021024
CP013107
Alphaproteobacteria
Sinorhizobium americanum CFNEI 73 [CP013107]
263816
263732
-
Leu
CAG
-
¡û
>C171040315
CP015625
Alphaproteobacteria
Bartonella choladocola BBC0122 [CP015625]
2156505
2156589
+
Leu
CAG
-
¡û
>C171099688
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
1127045
1127129
+
Leu
CAG
-
¡û
>C171115068
CP021024
Alphaproteobacteria
Rhizobium sp. TAL182 [CP021024]
281841
281757
-
Leu
CAG
-
¡û
>C171116109
CP021124
Alphaproteobacteria
Rhizobium sp. Kim5 [CP021124]
259048
258964
-
Leu
CAG
-
¡û
>W131219905
ATYY01000003
Alphaproteobacteria
Rhizobium mesoamericanum STM 6155 [ATYY]
357266
357182
-
Leu
CAG
[ENA]
¡û
>W131220496
ATZL01000048
Alphaproteobacteria
Rhizobium sp. JGI 001012-K08 [ATZL]
27451
27367
-
Leu
CAG
[ENA]
¡û
>C003021
BX897699
Alphaproteobacteria
Bartonella henselae str. Houston-1 [BX897699]
1385637
1385721
+
Leu
CAG
[Ensembl]
¡û
>C004001
BX897700
Alphaproteobacteria
Bartonella quintana str. Toulouse [BX897700]
1160971
1161055
+
Leu
CAG
[Ensembl]
¡û
>C018434
CP000133
Alphaproteobacteria
Rhizobium etli CFN 42 [CP000133]
257826
257742
-
Leu
CAG
[Ensembl]
¡û
>W141006856
AGWD01000016
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Tweed [AGWD]
218376
218460
+
Leu
CAG
[ENA]
¡û
>W141009646
AHPB01000023
Alphaproteobacteria
Bartonella quintana JK 39 [AHPB]
414173
414257
+
Leu
CAG
[ENA]
¡û
>W141009678
AHPC01000002
Alphaproteobacteria
Bartonella quintana JK 67 [AHPC]
86549
86633
+
Leu
CAG
[ENA]
¡û
>W141009705
AHPD01000001
Alphaproteobacteria
Bartonella quintana JK 68 [AHPD]
18125
18041
-
Leu
CAG
[ENA]
¡û
>W141009783
AHPE01000022
Alphaproteobacteria
Bartonella quintana JK 56 [AHPE]
60634
60718
+
Leu
CAG
[ENA]
¡û
>W141009785
AHPF01000001
Alphaproteobacteria
Bartonella quintana JK 63 [AHPF]
26364
26448
+
Leu
CAG
[ENA]
¡û
>W141009860
AHPG01000015
Alphaproteobacteria
Bartonella quintana JK 31 [AHPG]
49992
49908
-
Leu
CAG
[ENA]
¡û
>W141009872
AHPH01000001
Alphaproteobacteria
Bartonella quintana JK 19 [AHPH]
8070
7986
-
Leu
CAG
[ENA]
¡û
>W141009935
AHPI01000037
Alphaproteobacteria
Bartonella henselae JK 53 [AHPI]
37228
37312
+
Leu
CAG
[ENA]
¡û
>W141009976
AHPJ01000038
Alphaproteobacteria
Bartonella henselae str. Zeus [AHPJ]
331802
331886
+
Leu
CAG
[ENA]
¡û
>W141010038
AHPK01000018
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
506
422
-
Leu
CAG
[ENA]
¡û
>W141010072
AHPL01000010
Alphaproteobacteria
Bartonella koehlerae C-29 [AHPL]
328960
329044
+
Leu
CAG
[ENA]
¡û
>W141038057
ALVF01000059
Alphaproteobacteria
Bartonella birtlesii E7 [ALVF]
11071
10987
-
Leu
CAG
[ENA]
¡û
>W141038082
ALVG01000032
Alphaproteobacteria
Bartonella birtlesii E11 [ALVG]
11070
10986
-
Leu
CAG
[ENA]
¡û
>W141038119
ALVH01000027
Alphaproteobacteria
Bartonella birtlesii E4 [ALVH]
11072
10988
-
Leu
CAG
[ENA]
¡û
>W141039338
ALWY01000173
Alphaproteobacteria
Bartonella birtlesii H12 [ALWY]
12003
11919
-
Leu
CAG
[ENA]
¡û
>W08010507
ABRA01001389
Alphaproteobacteria
Rhizobium etli 8C-3 [ABRA]
44
128
+
Leu
CAG
[ENA]
¡û
>W08010585
ABRC01002874
Alphaproteobacteria
Rhizobium etli IE4771 [ABRC]
1298
1382
+
Leu
CAG
[ENA]
¡û
>W141216452
AZUW01000056
Alphaproteobacteria
Ensifer sp. WSM1721 [AZUW]
1757
1841
+
Leu
CAG
[ENA]
¡û
>W141222465
AZZR01000005
Alphaproteobacteria
Bartonella henselae JK 51 [AZZR]
546799
546883
+
Leu
CAG
[ENA]
¡û
>W141222510
AZZS01000008
Alphaproteobacteria
Bartonella henselae JK 50 [AZZS]
341299
341383
+
Leu
CAG
[ENA]
¡û
>W141222534
AZZT01000007
Alphaproteobacteria
Bartonella henselae JK 42 [AZZT]
352216
352300
+
Leu
CAG
[ENA]
¡û
>W141222570
AZZU01000002
Alphaproteobacteria
Bartonella henselae JK 41 [AZZU]
349107
349191
+
Leu
CAG
[ENA]
¡û
>W141222633
AZZV01000011
Alphaproteobacteria
Bartonella quintana BQ2-D70 [AZZV]
385672
385756
+
Leu
CAG
[ENA]
¡û
>W141222664
AZZW01000008
Alphaproteobacteria
Bartonella quintana JK 73rel [AZZW]
975704
975788
+
Leu
CAG
[ENA]
¡û
>W141222711
AZZX01000009
Alphaproteobacteria
Bartonella quintana JK 73 [AZZX]
972420
972504
+
Leu
CAG
[ENA]
¡û
>W141222745
AZZY01000002
Alphaproteobacteria
Bartonella quintana JK 12 [AZZY]
973968
974052
+
Leu
CAG
[ENA]
¡û
>W141222796
AZZZ01000008
Alphaproteobacteria
Bartonella quintana JK 7 [AZZZ]
970926
971010
+
Leu
CAG
[ENA]
¡û
>W141245856
CALU01000009
Alphaproteobacteria
Bartonella florencae R4(2010) [CALU]
154310
154394
+
Leu
CAG
[ENA]
¡û
>W141245891
CALV01000035
Alphaproteobacteria
Bartonella senegalensis OS02 [CALV]
555
471
-
Leu
CAG
[ENA]
¡û
>W141245915
CALW02000008
Alphaproteobacteria
Bartonella rattaustraliani AUST/NH4 [CALW]
330
246
-
Leu
CAG
[ENA]
¡û
>W141275396
JACX01000006
Alphaproteobacteria
Bartonella grahamii ATCC 700132 [JACX]
51223
51307
+
Leu
CAG
[ENA]
¡û
>W141275451
JACY01000015
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii ATCC 51672 [JACY]
34965
35049
+
Leu
CAG
[ENA]
¡û
>C08008177
CP001074
Alphaproteobacteria
Rhizobium etli CIAT 652 [CP001074]
293746
293665
-
Leu
CAG
[Ensembl]
¡û
>WENV170681029
LFEF01044793
[LFEF] freshwater metagenome; waterbloom
8029
7945
-
Leu
CAG
[ENA]
¢þ
>C181046380
CP020742
Alphaproteobacteria
Bartonella henselae Houston-I [CP020742]
1408474
1408558
+
Leu
CAG
-
¡û
>C181209323
LS483373
Alphaproteobacteria
Bartonella quintana NCTC12899 [LS483373]
1006835
1006919
+
Leu
CAG
-
¡û
>C191214250
LR134529
Alphaproteobacteria
Bartonella vinsonii NCTC12905 [LR134529]
1521332
1521416
+
Leu
CAG
-
¡û
>C141004119
CP005950
Alphaproteobacteria
Rhizobium etli bv. mimosae str. Mim1 [CP005950]
255911
255827
-
Leu
CAG
[Ensembl]
¡û
>C09102318
CP001562
Alphaproteobacteria
Bartonella grahamii as4aup [CP001562]
1070949
1070865
-
Leu
CAG
[Ensembl]
¡û
>W1910840532
MZZP01000001
Alphaproteobacteria
Rhizobium phaseoli CCGM2 [MZZP]
219415
219331
-
Leu
CAG
[ENA]
¡û
>W1910840629
NAAA01000010
Alphaproteobacteria
Rhizobium phaseoli CCGM9 [NAAA]
7047
6963
-
Leu
CAG
[ENA]
¡û
>W1911409462
NWSX01000008
Alphaproteobacteria
Rhizobium sp. J15 [NWSX]
167972
167888
-
Leu
CAG
[ENA]
¡û
>W1810273437
PSOW01000006
Alphaproteobacteria
Rhizobium sp. H4 [PSOW]
187516
187432
-
Leu
CAG
[ENA]
¡û
>C151101972
HG965802
Alphaproteobacteria
Bartonella henselae BM1374163 [HG965802]
1370941
1371025
+
Leu
CAG
[Ensembl]
¡û
>C151102013
HG969191
Alphaproteobacteria
Bartonella henselae BM1374165 [HG969191]
1456948
1457032
+
Leu
CAG
[Ensembl]
¡û
>C151105173
LN879429
Alphaproteobacteria
Bartonella henselae MVT02 [LN879429]
1370941
1371025
+
Leu
CAG
-
¡û
>W11152881
AEYZ01000247
Alphaproteobacteria
Rhizobium etli CNPAF512 [AEYZ]
3238
3322
+
Leu
CAG
[ENA]
¡û
>C161056476
CP013490
Alphaproteobacteria
Rhizobium sp. N6212 [CP013490]
284896
284812
-
Leu
CAG
-
¡û
>C161057343
CP013580
Alphaproteobacteria
Rhizobium phaseoli N261 [CP013580]
294129
294045
-
Leu
CAG
-
¡û
>C161057445
CP013590
Alphaproteobacteria
Rhizobium sp. N871 [CP013590]
261269
261185
-
Leu
CAG
-
¡û
>W121059113
AILU01000033
Alphaproteobacteria
Bartonella washoeensis Sb944nv [AILU]
170949
171033
+
Leu
CAG
[ENA]
¡û
>W121059316
AILZ01000013
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis OK-94-513 [AILZ]
35016
34932
-
Leu
CAG
[ENA]
¡û
>W121059451
AIMC01000032
Alphaproteobacteria
Bartonella birtlesii LL-WM9 [AIMC]
10967
10883
-
Leu
CAG
[ENA]
¡û
>W121059475
AIMD01000033
Alphaproteobacteria
Bartonella taylorii 8TBB [AIMD]
189013
189097
+
Leu
CAG
[ENA]
¡û
>W121059502
AIME01000002
Alphaproteobacteria
Bartonella alsatica IBS 382 [AIME]
115128
115044
-
Leu
CAG
[ENA]
¡û
>W121059646
AIMH01000031
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis Pm136co [AIMH]
53359
53275
-
Leu
CAG
[ENA]
¡û
>W121066173
AJQP01000166
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
44728
44812
+
Leu
CAG
[ENA]
¡û
>W121066260
AJQR01000201
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
24633
24717
+
Leu
CAG
[ENA]
¡û
>W121066308
AJQS01000167
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83753 [AJQS]
53036
53120
+
Leu
CAG
[ENA]
¡û
>W121084677
AKIP01000035
Alphaproteobacteria
Bartonella birtlesii IBS 325 [AKIP]
200088
200172
+
Leu
CAG
[ENA]
¡û
>C131006632
CP003784
Alphaproteobacteria
Bartonella quintana RM-11 [CP003784]
1165589
1165673
+
Leu
CAG
[Ensembl]
¡û
>C131002111
CP003124
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Winnie [CP003124]
1281825
1281909
+
Leu
CAG
[Ensembl]
¡û
>W1610882057
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
1190423
1190507
+
Leu
CAG
[ENA]
¡û
>W1710593776
FRXO01000003
Alphaproteobacteria
Pseudoxanthobacter soli DSM 19599 [FRXO]
169103
169019
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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