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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117834 (37 seq.)
>WENV180440944
OBWV01011871
[OBWV] human gut metagenome; faeces
118
34
-
Leu
GAG
[ENA]
¢þ
>WENV180698135
ODDE01042022
[ODDE] human metagenome; G_DNA_Supragingival plaque
227
311
+
Leu
GAG
[ENA]
¢þ
>WENV180732282
ODGY01000075
[ODGY] human metagenome; G_DNA_Supragingival plaque
45716
45800
+
Leu
GAG
[ENA]
¢þ
>WENV180733629
ODGZ01000379
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1121
1037
-
Leu
GAG
[ENA]
¢þ
>WENV180739319
ODHD01032356
[ODHD] human metagenome; G_DNA_Supragingival plaque
141
57
-
Leu
GAG
[ENA]
¢þ
>WENV180764884
ODIB01003530
[ODIB] human metagenome; G_DNA_Supragingival plaque
2309
2225
-
Leu
GAG
[ENA]
¢þ
>WENV180798005
ODJB01209179
[ODJB] human metagenome; G_DNA_Supragingival plaque
25
109
+
Leu
GAG
[ENA]
¢þ
>WENV180809595
ODJK01027352
[ODJK] human metagenome; G_DNA_Subgingival plaque
772
856
+
Leu
GAG
[ENA]
¢þ
>WENV180835904
ODKE01019295
[ODKE] human metagenome; G_DNA_Supragingival plaque
1380
1464
+
Leu
GAG
[ENA]
¢þ
>WENV180843515
ODKN01004170
[ODKN] human metagenome; G_DNA_Supragingival plaque
2355
2271
-
Leu
GAG
[ENA]
¢þ
>WENV180846975
ODKT01032688
[ODKT] human metagenome; G_DNA_Supragingival plaque
104
188
+
Leu
GAG
[ENA]
¢þ
>WENV180922524
ODTJ01005262
[ODTJ] human metagenome; G_DNA_Supragingival plaque
823
739
-
Leu
GAG
[ENA]
¢þ
>WENV180925115
ODTK01039877
[ODTK] human metagenome; G_DNA_Supragingival plaque
242
158
-
Leu
GAG
[ENA]
¢þ
>WENV180950997
ODUH01005726
[ODUH] human metagenome; G_DNA_Subgingival plaque
2345
2261
-
Leu
GAG
[ENA]
¢þ
>WENV180964325
ODUO01001087
[ODUO] human metagenome; G_DNA_Supragingival plaque
11456
11372
-
Leu
GAG
[ENA]
¢þ
>WENV180964590
ODUO01005302
[ODUO] human metagenome; G_DNA_Supragingival plaque
456
540
+
Leu
GAG
[ENA]
¢þ
>WENV180975729
ODUY01017061
[ODUY] human metagenome; G_DNA_Supragingival plaque
1425
1509
+
Leu
GAG
[ENA]
¢þ
>WENV180981296
ODVE01014377
[ODVE] human metagenome; G_DNA_Supragingival plaque
951
867
-
Leu
GAG
[ENA]
¢þ
>WENV180983613
ODVF01023375
[ODVF] human metagenome; G_DNA_Supragingival plaque
230
146
-
Leu
GAG
[ENA]
¢þ
>WENV180987312
ODVK01013276
[ODVK] human metagenome; G_DNA_Supragingival plaque
1181
1265
+
Leu
GAG
[ENA]
¢þ
>WENV180998167
ODVT01000045
[ODVT] human metagenome; G_DNA_Buccal mucosa
38442
38358
-
Leu
GAG
[ENA]
¢þ
>WENV181019334
ODWU01002149
[ODWU] human metagenome; G_DNA_Supragingival plaque
5727
5811
+
Leu
GAG
[ENA]
¢þ
>WENV181030206
ODXF01076660
[ODXF] human metagenome; G_DNA_Supragingival plaque
122
206
+
Leu
GAG
[ENA]
¢þ
>WENV181049827
ODYD01002461
[ODYD] human metagenome; G_DNA_Supragingival plaque
2668
2752
+
Leu
GAG
[ENA]
¢þ
>WENV181050718
ODYD01046732
[ODYD] human metagenome; G_DNA_Supragingival plaque
385
301
-
Leu
GAG
[ENA]
¢þ
>WENV181066696
ODZI01001000
[ODZI] human metagenome; G_DNA_Supragingival plaque
1841
1925
+
Leu
GAG
[ENA]
¢þ
>WENV181080328
OEAS01039901
[OEAS] human metagenome; G_DNA_Supragingival plaque
1647
1563
-
Leu
GAG
[ENA]
¢þ
>WENV181090412
OEBC01000417
[OEBC] human metagenome; G_DNA_Supragingival plaque
17782
17866
+
Leu
GAG
[ENA]
¢þ
>WENV181137437
OEGJ01003824
[OEGJ] human metagenome; G_DNA_Supragingival plaque
2328
2244
-
Leu
GAG
[ENA]
¢þ
>WENV181146535
OEHQ01008622
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1791
1707
-
Leu
GAG
[ENA]
¢þ
>WENV181177519
OEJS01003780
[OEJS] human metagenome; G_DNA_Supragingival plaque
3228
3144
-
Leu
GAG
[ENA]
¢þ
>WENV181177570
OEJS01005792
[OEJS] human metagenome; G_DNA_Supragingival plaque
2349
2265
-
Leu
GAG
[ENA]
¢þ
>WENV181179949
OEJT01034637
[OEJT] human metagenome; G_DNA_Supragingival plaque
117
33
-
Leu
GAG
[ENA]
¢þ
>WENV181181034
OEJU01003639
[OEJU] human metagenome; G_DNA_Supragingival plaque
3687
3771
+
Leu
GAG
[ENA]
¢þ
>C151092573
CP012196
Campylobacterota
Campylobacter gracilis ATCC 33236 [CP012196]
1531769
1531685
-
Leu
GAG
-
¡û
>W10106134
ACYG01000032
Campylobacterota
Campylobacter gracilis RM3268 [ACYG]
76013
75929
-
Leu
GAG
[ENA]
¡û
>W11108457
ACYG01000032
Campylobacterota
Campylobacter gracilis RM3268 [ACYG]
76013
75929
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK