This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117897 (48 seq.)
>W1711083878
LSVI01000048
Bacillota
Lactobacillus helveticus [LSVI]
261
344
+
Leu
TAG
[ENA]
¡û
>W1711083959
LSVJ01000142
Bacillota
Lactobacillus helveticus [LSVJ]
261
344
+
Leu
TAG
[ENA]
¡û
>C171108181
CP020457
Bacillota
Lactobacillus amylolyticus L6 [CP020457]
1154786
1154703
-
Leu
TAG
-
¡û
>WENV180983853
ODVF01047228
[ODVF] human metagenome; G_DNA_Supragingival plaque
627
710
+
Leu
TAG
[ENA]
¢þ
>WENV181195360
OEQS01032228
[OEQS] metagenome; Caecal content
33
114
+
Leu
TAG
[ENA]
¢þ
>WENV181495036
OGGB01049261
[OGGB] metagenome; Human gut stool
510
427
-
Leu
TAG
[ENA]
¢þ
>W141255618
CBUL010000157
Bacillota
Lactobacillus helveticus CIRM-BIA 104 [CBUL]
256
339
+
Leu
TAG
[ENA]
¡û
>W141255677
CBUM010000178
Bacillota
Lactobacillus helveticus CIRM-BIA 103 [CBUM]
1890
1807
-
Leu
TAG
[ENA]
¡û
>W141255738
CBUN010000140
Bacillota
Lactobacillus helveticus CIRM-BIA 101 [CBUN]
883
800
-
Leu
TAG
[ENA]
¡û
>WENV182856996
OKNS01000222
[OKNS] human gut metagenome; human gut
712
631
-
Leu
TAG
[ENA]
¢þ
>WENV182988518
OLAF01020665
[OLAF] human gut metagenome; human gut
233
149
-
Leu
TAG
[ENA]
¢þ
>C181017296
CP015444
Bacillota
Lactobacillus helveticus FAM8627 [CP015444]
1398326
1398243
-
Leu
TAG
-
¡û
>C181027670
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
675920
675837
-
Leu
TAG
-
¡û
>C181178863
CP029476
Bacillota
Lactobacillus apis ESL0185 [CP029476]
358374
358457
+
Leu
TAG
-
¡û
>C191014813
CP017982
Bacillota
Lactobacillus helveticus LH99 [CP017982]
422672
422755
+
Leu
TAG
-
¡û
>C191073249
CP031016
Bacillota
Lactobacillus helveticus [CP031016]
477265
477348
+
Leu
TAG
-
¡û
>C191081375
CP031835
Bacillota
Lactobacillus amylolyticus L5 [CP031835]
1147731
1147648
-
Leu
TAG
-
¡û
>W09128119
ACLM01000218
Bacillota
Lactobacillus helveticus DSM 20075 [ACLM]
199
282
+
Leu
TAG
[ENA]
¡û
>W1910901944
NGOM01000009
Bacillota
Lactobacillus taiwanensis 111z [NGOM]
11354
11270
-
Leu
TAG
[ENA]
¡û
>W1910902204
NGOR01000004
Bacillota
Lactobacillus taiwanensis 111k [NGOR]
11354
11270
-
Leu
TAG
[ENA]
¡û
>W1910902515
NGOX01000002
Bacillota
Lactobacillus taiwanensis 103n [NGOX]
11354
11270
-
Leu
TAG
[ENA]
¡û
>W1910922967
NIGM01000103
Bacillota
Lactobacillus helveticus M92 [NIGM]
183
266
+
Leu
TAG
[ENA]
¡û
>W1910923391
NIGX01000119
Bacillota
Lactobacillus helveticus LMG S-29187 [NIGX]
198
281
+
Leu
TAG
[ENA]
¡û
>W1911218712
NRQX01000272
Bacillota
Lactobacillus helveticus UC1156 [NRQX]
259
342
+
Leu
TAG
[ENA]
¡û
>W1911531912
OGTV01000037
Bacillota
Lactobacillus helveticus [OGTV]
13015
12932
-
Leu
TAG
[ENA]
¡û
>W1911531967
OGTV02000037
Bacillota
Lactobacillus helveticus [OGTV]
13015
12932
-
Leu
TAG
[ENA]
¡û
>W1911631493
PUFF01000021
Bacillota
Lactobacillus amylolyticus DSM 11664 [PUFF]
12770
12687
-
Leu
TAG
[ENA]
¡û
>W1810177303
PJRL01000041
Bacillota
Lactobacillus helveticus ATCC 12046 [PJRL]
1726
1643
-
Leu
TAG
[ENA]
¡û
>W1810665918
QJOH01000165
Bacillota
Lactobacillus helveticus FAM22076 [QJOH]
261
344
+
Leu
TAG
[ENA]
¡û
>W1810666009
QJOJ01000054
Bacillota
Lactobacillus helveticus FAM1450 [QJOJ]
12915
12832
-
Leu
TAG
[ENA]
¡û
>W1810666157
QJOL01000166
Bacillota
Lactobacillus helveticus FAM1182 [QJOL]
261
344
+
Leu
TAG
[ENA]
¡û
>C151003408
CP002427
Bacillota
Lactobacillus helveticus H9 [CP002427]
1544298
1544215
-
Leu
TAG
[Ensembl]
¡û
>C151061683
CP009907
Bacillota
Lactobacillus helveticus KLDS1.8701 [CP009907]
639431
639514
+
Leu
TAG
[Ensembl]
¡û
>C151081825
CP011386
Bacillota
Lactobacillus helveticus MB2-1 [CP011386]
418494
418577
+
Leu
TAG
[Ensembl]
¡û
>W10116635
ADNY01000058
Bacillota
Lactobacillus amylolyticus DSM 11664 [ADNY]
165
248
+
Leu
TAG
[ENA]
¡û
>W1511354448
JRQG01000044
Bacillota
Lactobacillus helveticus ATCC 10386 [JRQG]
211
294
+
Leu
TAG
[ENA]
¡û
>W1511355758
JRTS01000044
Bacillota
Lactobacillus helveticus M3 [JRTS]
209
292
+
Leu
TAG
[ENA]
¡û
>W11121304
ADNY01000058
Bacillota
Lactobacillus amylolyticus DSM 11664 [ADNY]
165
248
+
Leu
TAG
[ENA]
¡û
>W11152527
AEYL01000492
Bacillota
Lactobacillus helveticus MTCC 5463 [AEYL]
450
533
+
Leu
TAG
[ENA]
¡û
>W1610032826
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
249
332
+
Leu
TAG
[ENA]
¡û
>W1610035336
AZEK01000185
Bacillota
Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 [AZEK]
117
200
+
Leu
TAG
[ENA]
¡û
>W1610035606
AZEP01000091
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
222
139
-
Leu
TAG
[ENA]
¡û
>C131001242
CP002081
Bacillota
Lactobacillus helveticus CNRZ32 [CP002081]
1889909
1889826
-
Leu
TAG
[Ensembl]
¡û
>W1610642794
LJDA01000215
Bacillota
Lactobacillus crispatus [LJDA]
521
438
-
Leu
TAG
[ENA]
¡û
>W1610922631
LSVI01000048
Bacillota
Lactobacillus helveticus [LSVI]
261
344
+
Leu
TAG
[ENA]
¡û
>W1610922712
LSVJ01000142
Bacillota
Lactobacillus helveticus [LSVJ]
261
344
+
Leu
TAG
[ENA]
¡û
>W1710030157
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
249
332
+
Leu
TAG
[ENA]
¡û
>W1710032645
AZEP01000091
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
222
139
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK