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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117900 (104 seq.)
>W1711318560
MAYN01000008
Gammaproteobacteria
Pantoea eucrina [MAYN]
1058348
1058264
-
Tyr
GTA
[ENA]
¡û
>W1711318561
MAYN01000008
Gammaproteobacteria
Pantoea eucrina [MAYN]
1058220
1058136
-
Tyr
GTA
[ENA]
¡û
>W1711360469
MDJQ01000023
Gammaproteobacteria
Pantoea sp. Ae16 [MDJQ]
607997
608081
+
Tyr
GTA
[ENA]
¡û
>W1711360470
MDJQ01000023
Gammaproteobacteria
Pantoea sp. Ae16 [MDJQ]
608125
608209
+
Tyr
GTA
[ENA]
¡û
>W1711513319
MLFP01000086
Gammaproteobacteria
Pantoea rodasii [MLFP]
541283
541199
-
Tyr
GTA
[ENA]
¡û
>W1711513320
MLFP01000086
Gammaproteobacteria
Pantoea rodasii [MLFP]
541154
541070
-
Tyr
GTA
[ENA]
¡û
>W1711513379
MLFR01000006
Gammaproteobacteria
Pantoea rwandensis [MLFR]
114
30
-
Tyr
GTA
[ENA]
¡û
>W1711513383
MLFR01000008
Gammaproteobacteria
Pantoea rwandensis [MLFR]
161351
161267
-
Tyr
GTA
[ENA]
¡û
>W1712096157
NHZE01000042
Gammaproteobacteria
Pantoea sp. VS1 [NHZE]
104027
104111
+
Tyr
GTA
[ENA]
¡û
>W1712096158
NHZE01000042
Gammaproteobacteria
Pantoea sp. VS1 [NHZE]
104156
104240
+
Tyr
GTA
[ENA]
¡û
>W141039450
ALXE01000019
Gammaproteobacteria
Pantoea sp. A4 [ALXE]
132992
133076
+
Tyr
GTA
[ENA]
¡û
>W141111698
AVSS01000040
Gammaproteobacteria
Pantoea dispersa EGD-AAK13 [AVSS]
133536
133452
-
Tyr
GTA
[ENA]
¡û
>W141111699
AVSS01000040
Gammaproteobacteria
Pantoea dispersa EGD-AAK13 [AVSS]
133407
133323
-
Tyr
GTA
[ENA]
¡û
>WENV170000292
AEWW01004243
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
10559
10643
+
Tyr
GTA
[ENA]
¢þ
>WENV170000293
AEWW01004243
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
10689
10773
+
Tyr
GTA
[ENA]
¢þ
>WENV170002092
AGFT01110679
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
3
87
+
Tyr
GTA
[ENA]
¢þ
>W1911492754
OBEC01000001
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
646449
646365
-
Tyr
GTA
[ENA]
¡û
>W1911492755
OBEC01000001
Gammaproteobacteria
Pantoea sp. GL120224-02 [OBEC]
646319
646235
-
Tyr
GTA
[ENA]
¡û
>W1810073258
PEFU01000003
Gammaproteobacteria
Pantoea sp. BRM17 [PEFU]
1538814
1538898
+
Tyr
GTA
[ENA]
¡û
>W1810073259
PEFU01000003
Gammaproteobacteria
Pantoea sp. BRM17 [PEFU]
1538942
1539026
+
Tyr
GTA
[ENA]
¡û
>W1810147222
PIQI01000011
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
289793
289877
+
Tyr
GTA
[ENA]
¡û
>W1810147223
PIQI01000011
Gammaproteobacteria
Pantoea rodasii DSM 26611 [PIQI]
289922
290006
+
Tyr
GTA
[ENA]
¡û
>W1810226392
POWL01000001
Gammaproteobacteria
Pantoea sp. ICBG 1758 [POWL]
1227862
1227946
+
Tyr
GTA
[ENA]
¡û
>W1810226393
POWL01000001
Gammaproteobacteria
Pantoea sp. ICBG 1758 [POWL]
1227990
1228074
+
Tyr
GTA
[ENA]
¡û
>W1810226470
POWM01000001
Gammaproteobacteria
Pantoea sp. ICBG 985 [POWM]
1238946
1239030
+
Tyr
GTA
[ENA]
¡û
>W1810226471
POWM01000001
Gammaproteobacteria
Pantoea sp. ICBG 985 [POWM]
1239075
1239159
+
Tyr
GTA
[ENA]
¡û
>W1810226550
POWN01000001
Gammaproteobacteria
Pantoea sp. ICBG 828 [POWN]
686
602
-
Tyr
GTA
[ENA]
¡û
>W1810226551
POWN01000001
Gammaproteobacteria
Pantoea sp. ICBG 828 [POWN]
557
473
-
Tyr
GTA
[ENA]
¡û
>W1810501502
QBJB02000001
Gammaproteobacteria
Pantoea sp. RIT 413 [QBJB]
145275
145191
-
Tyr
GTA
[ENA]
¡û
>W1810501503
QBJB02000001
Gammaproteobacteria
Pantoea sp. RIT 413 [QBJB]
145147
145063
-
Tyr
GTA
[ENA]
¡û
>W1810722745
QNVM01000002
Gammaproteobacteria
Pantoea sp. 3_1284 [QNVM]
396030
395946
-
Tyr
GTA
[ENA]
¡û
>C151001017
AP012551
Gammaproteobacteria
Plautia stali symbiont [AP012551]
1259886
1259802
-
Tyr
GTA
[Ensembl]
¡û
>C151051582
CP009454
Gammaproteobacteria
Pantoea rwandensis ND04 [CP009454]
2485211
2485127
-
Tyr
GTA
[Ensembl]
¡û
>C151051583
CP009454
Gammaproteobacteria
Pantoea rwandensis ND04 [CP009454]
2485081
2484997
-
Tyr
GTA
[Ensembl]
¡û
>C151061142
CP009880
Gammaproteobacteria
Pantoea sp. PSNIH1 [CP009880]
2993847
2993931
+
Tyr
GTA
[Ensembl]
¡û
>C151061143
CP009880
Gammaproteobacteria
Pantoea sp. PSNIH1 [CP009880]
2993975
2994059
+
Tyr
GTA
[Ensembl]
¡û
>WENV11100650
AEWW01004243
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
10559
10643
+
Tyr
GTA
[ENA]
¡û
>WENV11100651
AEWW01004243
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
10689
10773
+
Tyr
GTA
[ENA]
¡û
>WENV11102164
AGFT01110679
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
3
87
+
Tyr
GTA
[ENA]
¡û
>W1511356725
JRUP01000027
Gammaproteobacteria
Enterobacter cancerogenus M004 [JRUP]
128301
128217
-
Tyr
GTA
[ENA]
¡û
>W1511356726
JRUP01000027
Gammaproteobacteria
Enterobacter cancerogenus M004 [JRUP]
128171
128087
-
Tyr
GTA
[ENA]
¡û
>W1511402192
JTJJ01000087
Gammaproteobacteria
Pantoea rodasii ND03 [JTJJ]
4001
3917
-
Tyr
GTA
[ENA]
¡û
>W1511402193
JTJJ01000087
Gammaproteobacteria
Pantoea rodasii ND03 [JTJJ]
3871
3787
-
Tyr
GTA
[ENA]
¡û
>W1511547692
JZRD01000031
Gammaproteobacteria
Pantoea sp. SM3 [JZRD]
155047
154963
-
Tyr
GTA
[ENA]
¡û
>W1511547693
JZRD01000031
Gammaproteobacteria
Pantoea sp. SM3 [JZRD]
154916
154832
-
Tyr
GTA
[ENA]
¡û
>W1511547920
JZRH01000008
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
85144
85228
+
Tyr
GTA
[ENA]
¡û
>W1511547921
JZRH01000008
Gammaproteobacteria
Pantoea sp. BL1 [JZRH]
85275
85359
+
Tyr
GTA
[ENA]
¡û
>W11184522
BABY01000143
Gammaproteobacteria
Plautia stali symbiont [BABY]
252
168
-
Tyr
GTA
[ENA]
¡û
>C161035404
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
1727618
1727534
-
Tyr
GTA
[Ensembl]
¡û
>C161035405
CP011427
Gammaproteobacteria
Pantoea vagans ND02 [CP011427]
1727488
1727404
-
Tyr
GTA
[Ensembl]
¡û
>W1610053020
BBNZ01000006
Gammaproteobacteria
Plautia stali symbiont [BBNZ]
78442
78358
-
Tyr
GTA
[ENA]
¡û
>W1610053141
BBOB01000040
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
40062
40146
+
Tyr
GTA
[ENA]
¡û
>W1610053142
BBOB01000040
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
40191
40275
+
Tyr
GTA
[ENA]
¡û
>W1610053189
BBOC01000007
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
16117
16201
+
Tyr
GTA
[ENA]
¡û
>W1610053190
BBOC01000007
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
16249
16333
+
Tyr
GTA
[ENA]
¡û
>W1610053270
BBOD01000007
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
107519
107603
+
Tyr
GTA
[ENA]
¡û
>W1610053271
BBOD01000007
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
107649
107733
+
Tyr
GTA
[ENA]
¡û
>W1610591062
LDRY01000001
Gammaproteobacteria
Pantoea dispersa [LDRY]
855983
855899
-
Tyr
GTA
[ENA]
¡û
>W1610591063
LDRY01000001
Gammaproteobacteria
Pantoea dispersa [LDRY]
855854
855770
-
Tyr
GTA
[ENA]
¡û
>W1610591139
LDRZ01000005
Gammaproteobacteria
Pantoea dispersa [LDRZ]
8685
8769
+
Tyr
GTA
[ENA]
¡û
>W1610591140
LDRZ01000005
Gammaproteobacteria
Pantoea dispersa [LDRZ]
8814
8898
+
Tyr
GTA
[ENA]
¡û
>W1610591254
LDSA01000026
Gammaproteobacteria
Pantoea dispersa [LDSA]
12663
12747
+
Tyr
GTA
[ENA]
¡û
>W1610591255
LDSA01000026
Gammaproteobacteria
Pantoea dispersa [LDSA]
12792
12876
+
Tyr
GTA
[ENA]
¡û
>W1610591291
LDSB01000012
Gammaproteobacteria
Pantoea dispersa [LDSB]
80527
80443
-
Tyr
GTA
[ENA]
¡û
>W1610591292
LDSB01000012
Gammaproteobacteria
Pantoea dispersa [LDSB]
80398
80314
-
Tyr
GTA
[ENA]
¡û
>W1610591373
LDSC01000013
Gammaproteobacteria
Pantoea dispersa [LDSC]
361079
360995
-
Tyr
GTA
[ENA]
¡û
>W1610591374
LDSC01000013
Gammaproteobacteria
Pantoea dispersa [LDSC]
360950
360866
-
Tyr
GTA
[ENA]
¡û
>W1610591440
LDSD01000019
Gammaproteobacteria
Pantoea dispersa [LDSD]
30105
30021
-
Tyr
GTA
[ENA]
¡û
>W1610591441
LDSD01000019
Gammaproteobacteria
Pantoea dispersa [LDSD]
29976
29892
-
Tyr
GTA
[ENA]
¡û
>W1610591471
LDSE01000008
Gammaproteobacteria
Pantoea dispersa [LDSE]
143091
143007
-
Tyr
GTA
[ENA]
¡û
>W1610591472
LDSE01000008
Gammaproteobacteria
Pantoea dispersa [LDSE]
142962
142878
-
Tyr
GTA
[ENA]
¡û
>W1610591572
LDSF01000034
Gammaproteobacteria
Pantoea dispersa [LDSF]
107123
107039
-
Tyr
GTA
[ENA]
¡û
>W1610591573
LDSF01000034
Gammaproteobacteria
Pantoea dispersa [LDSF]
106994
106910
-
Tyr
GTA
[ENA]
¡û
>W1610591590
LDSF01000058
Gammaproteobacteria
Pantoea dispersa [LDSF]
203
119
-
Tyr
GTA
[ENA]
¡û
>W1610591591
LDSG01000001
Gammaproteobacteria
Pantoea dispersa [LDSG]
189890
189806
-
Tyr
GTA
[ENA]
¡û
>W1610591592
LDSG01000001
Gammaproteobacteria
Pantoea dispersa [LDSG]
189761
189677
-
Tyr
GTA
[ENA]
¡û
>W1611061903
MAYN01000008
Gammaproteobacteria
Pantoea eucrina [MAYN]
1058348
1058264
-
Tyr
GTA
[ENA]
¡û
>W1611061904
MAYN01000008
Gammaproteobacteria
Pantoea eucrina [MAYN]
1058220
1058136
-
Tyr
GTA
[ENA]
¡û
>W1710049398
BBNZ01000006
Gammaproteobacteria
Plautia stali symbiont [BBNZ]
78442
78358
-
Tyr
GTA
[ENA]
¡û
>W1710049519
BBOB01000040
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
40062
40146
+
Tyr
GTA
[ENA]
¡û
>W1710049520
BBOB01000040
Gammaproteobacteria
Type-C symbiont of Plautia stali [BBOB]
40191
40275
+
Tyr
GTA
[ENA]
¡û
>W1710049567
BBOC01000007
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
16117
16201
+
Tyr
GTA
[ENA]
¡û
>W1710049568
BBOC01000007
Gammaproteobacteria
Type-D symbiont of Plautia stali [BBOC]
16249
16333
+
Tyr
GTA
[ENA]
¡û
>W1710049648
BBOD01000007
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
107519
107603
+
Tyr
GTA
[ENA]
¡û
>W1710049649
BBOD01000007
Gammaproteobacteria
Type-E symbiont of Plautia stali [BBOD]
107649
107733
+
Tyr
GTA
[ENA]
¡û
>W1710710342
LDRY01000001
Gammaproteobacteria
Pantoea dispersa [LDRY]
855983
855899
-
Tyr
GTA
[ENA]
¡û
>W1710710343
LDRY01000001
Gammaproteobacteria
Pantoea dispersa [LDRY]
855854
855770
-
Tyr
GTA
[ENA]
¡û
>W1710710419
LDRZ01000005
Gammaproteobacteria
Pantoea dispersa [LDRZ]
8685
8769
+
Tyr
GTA
[ENA]
¡û
>W1710710420
LDRZ01000005
Gammaproteobacteria
Pantoea dispersa [LDRZ]
8814
8898
+
Tyr
GTA
[ENA]
¡û
>W1710710534
LDSA01000026
Gammaproteobacteria
Pantoea dispersa [LDSA]
12663
12747
+
Tyr
GTA
[ENA]
¡û
>W1710710535
LDSA01000026
Gammaproteobacteria
Pantoea dispersa [LDSA]
12792
12876
+
Tyr
GTA
[ENA]
¡û
>W1710710571
LDSB01000012
Gammaproteobacteria
Pantoea dispersa [LDSB]
80527
80443
-
Tyr
GTA
[ENA]
¡û
>W1710710572
LDSB01000012
Gammaproteobacteria
Pantoea dispersa [LDSB]
80398
80314
-
Tyr
GTA
[ENA]
¡û
>W1710710653
LDSC01000013
Gammaproteobacteria
Pantoea dispersa [LDSC]
361079
360995
-
Tyr
GTA
[ENA]
¡û
>W1710710654
LDSC01000013
Gammaproteobacteria
Pantoea dispersa [LDSC]
360950
360866
-
Tyr
GTA
[ENA]
¡û
>W1710710720
LDSD01000019
Gammaproteobacteria
Pantoea dispersa [LDSD]
30105
30021
-
Tyr
GTA
[ENA]
¡û
>W1710710721
LDSD01000019
Gammaproteobacteria
Pantoea dispersa [LDSD]
29976
29892
-
Tyr
GTA
[ENA]
¡û
>W1710710751
LDSE01000008
Gammaproteobacteria
Pantoea dispersa [LDSE]
143091
143007
-
Tyr
GTA
[ENA]
¡û
>W1710710752
LDSE01000008
Gammaproteobacteria
Pantoea dispersa [LDSE]
142962
142878
-
Tyr
GTA
[ENA]
¡û
>W1710710852
LDSF01000034
Gammaproteobacteria
Pantoea dispersa [LDSF]
107123
107039
-
Tyr
GTA
[ENA]
¡û
>W1710710853
LDSF01000034
Gammaproteobacteria
Pantoea dispersa [LDSF]
106994
106910
-
Tyr
GTA
[ENA]
¡û
>W1710710870
LDSF01000058
Gammaproteobacteria
Pantoea dispersa [LDSF]
203
119
-
Tyr
GTA
[ENA]
¡û
>W1710710871
LDSG01000001
Gammaproteobacteria
Pantoea dispersa [LDSG]
189890
189806
-
Tyr
GTA
[ENA]
¡û
>W1710710872
LDSG01000001
Gammaproteobacteria
Pantoea dispersa [LDSG]
189761
189677
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK