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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118005 (78 seq.)
>W1710979337
LPNY01000021
Campylobacterota
Arcobacter sp. EP1 [LPNY]
253243
253157
-
Leu
TAA
[ENA]
¡û
>W1710979349
LPNY01000122
Campylobacterota
Arcobacter sp. EP1 [LPNY]
15405
15319
-
Leu
TAA
[ENA]
¡û
>WENV183706938
PDWI01006007
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13798
13884
+
Leu
TAA
[ENA]
¢þ
>WENV183708160
PDWI01013449
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5378
5464
+
Leu
TAA
[ENA]
¢þ
>WENV183709587
PDWI01030560
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1190
1276
+
Leu
TAA
[ENA]
¢þ
>WENV183709782
PDWI01033986
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2
88
+
Leu
TAA
[ENA]
¢þ
>WENV183709842
PDWI01035171
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4248
4334
+
Leu
TAA
[ENA]
¢þ
>WENV183710365
PDWI01045097
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3634
3720
+
Leu
TAA
[ENA]
¢þ
>WENV183710926
PDWI01056737
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1962
1876
-
Leu
TAA
[ENA]
¢þ
>WENV183710929
PDWI01056737
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1531
1445
-
Leu
TAA
[ENA]
¢þ
>WENV183711132
PDWI01061783
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1421
1335
-
Leu
TAA
[ENA]
¢þ
>WENV183711484
PDWI01070957
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
11
97
+
Leu
TAA
[ENA]
¢þ
>WENV183712266
PDWI01094073
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
112
198
+
Leu
TAA
[ENA]
¢þ
>WENV183713067
PDWI01123035
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
915
829
-
Leu
TAA
[ENA]
¢þ
>WENV183713171
PDWI01127668
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
545
631
+
Leu
TAA
[ENA]
¢þ
>WENV183713197
PDWI01128715
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1798
1712
-
Leu
TAA
[ENA]
¢þ
>WENV183713499
PDWI01141086
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1676
1590
-
Leu
TAA
[ENA]
¢þ
>WENV183714903
PDWI01210317
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
867
781
-
Leu
TAA
[ENA]
¢þ
>WENV183715309
PDWI01232665
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1071
985
-
Leu
TAA
[ENA]
¢þ
>WENV183715328
PDWI01233641
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
987
1073
+
Leu
TAA
[ENA]
¢þ
>WENV183715456
PDWI01241734
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7
93
+
Leu
TAA
[ENA]
¢þ
>WENV183716055
PDWI01283152
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
911
825
-
Leu
TAA
[ENA]
¢þ
>WENV183716076
PDWI01284489
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
836
922
+
Leu
TAA
[ENA]
¢þ
>WENV183718270
PDWJ01003114
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
16349
16435
+
Leu
TAA
[ENA]
¢þ
>WENV183719525
PDWJ01015588
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
102
188
+
Leu
TAA
[ENA]
¢þ
>WENV183721140
PDWJ01056424
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
85
1
-
Leu
TAA
[ENA]
¢þ
>WENV183722119
PDWJ01106801
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
15
101
+
Leu
TAA
[ENA]
¢þ
>WENV183722414
PDWJ01126922
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1025
1109
+
Leu
TAA
[ENA]
¢þ
>WENV170012439
ASRK01000071
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
87
1
-
Leu
TAA
[ENA]
¢þ
>WENV170012585
ASRM01000058
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
21190
21276
+
Leu
TAA
[ENA]
¢þ
>WENV170012662
ASRN01000067
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
87
1
-
Leu
TAA
[ENA]
¢þ
>WENV170012772
ASRO01000486
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4600
4686
+
Leu
TAA
[ENA]
¢þ
>WENV170012855
ASRP01002882
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
850
764
-
Leu
TAA
[ENA]
¢þ
>WENV170012940
ASRQ01000096
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
8035
8121
+
Leu
TAA
[ENA]
¢þ
>WENV170607240
FUWD010791816
[FUWD] metagenome; unknown
475
389
-
Leu
TAA
[ENA]
¢þ
>WENV170635283
JDSF01000778
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
2763
2677
-
Leu
TAA
[ENA]
¢þ
>WENV170635286
JDSF01000778
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
2410
2324
-
Leu
TAA
[ENA]
¢þ
>WENV170635577
JDSG01000142
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
6288
6374
+
Leu
TAA
[ENA]
¢þ
>WENV170635580
JDSG01000142
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
6642
6728
+
Leu
TAA
[ENA]
¢þ
>WENV170646362
JQGR01000176
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
4856
4770
-
Leu
TAA
[ENA]
¢þ
>WENV170646378
JQGR01000371
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
733
647
-
Leu
TAA
[ENA]
¢þ
>C181196943
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
2458914
2458828
-
Leu
TAA
-
¡û
>C181196979
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
2574259
2574173
-
Leu
TAA
-
¡û
>C181197013
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1077783
1077697
-
Leu
TAA
-
¡û
>C191084654
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
2679432
2679346
-
Leu
TAA
-
¡û
>C191084678
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
1064959
1064873
-
Leu
TAA
-
¡û
>C191147183
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
2427624
2427538
-
Leu
TAA
-
¡û
>C191147212
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
931986
931900
-
Leu
TAA
-
¡û
>C191186402
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2767645
2767559
-
Leu
TAA
-
¡û
>W1911413050
NWVW01000005
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
39574
39488
-
Leu
TAA
[ENA]
¡û
>W1911413080
NWVW01000018
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
24092
24178
+
Leu
TAA
[ENA]
¡û
>W1911413097
NWVX01000007
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
77742
77828
+
Leu
TAA
[ENA]
¡û
>W1911413127
NWVX01000031
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
8791
8705
-
Leu
TAA
[ENA]
¡û
>W1911419386
NXAO01000047
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
37145
37231
+
Leu
TAA
[ENA]
¡û
>W1911419387
NXAO01000050
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
21208
21294
+
Leu
TAA
[ENA]
¡û
>W1911426223
NXIE01000002
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
599728
599642
-
Leu
TAA
[ENA]
¡û
>W1911426279
NXIF01000033
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
25039
24953
-
Leu
TAA
[ENA]
¡û
>W1911426293
NXIF01000039
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
27596
27682
+
Leu
TAA
[ENA]
¡û
>W1911576140
PDJU01000004
Campylobacterota
Arcobacter sp. F155 [PDJU]
164349
164435
+
Leu
TAA
[ENA]
¡û
>W1911576143
PDJU01000004
Campylobacterota
Arcobacter sp. F155 [PDJU]
169117
169203
+
Leu
TAA
[ENA]
¡û
>W1911576343
PDJY01000022
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
30331
30245
-
Leu
TAA
[ENA]
¡û
>W1911576384
PDJY01000057
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
6045
6131
+
Leu
TAA
[ENA]
¡û
>W1911576572
PDKE01000002
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
107575
107661
+
Leu
TAA
[ENA]
¡û
>W1911576575
PDKE01000002
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
109457
109543
+
Leu
TAA
[ENA]
¡û
>W1911576637
PDKF01000007
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
18390
18304
-
Leu
TAA
[ENA]
¡û
>W1911576640
PDKF01000007
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
17068
16982
-
Leu
TAA
[ENA]
¡û
>W1911576801
PDKJ01000013
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
61972
62058
+
Leu
TAA
[ENA]
¡û
>W1911576827
PDKK01000005
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
8236
8150
-
Leu
TAA
[ENA]
¡û
>W1911576882
PDKL01000007
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
142204
142290
+
Leu
TAA
[ENA]
¡û
>W1911576909
PDKM01000003
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
136854
136940
+
Leu
TAA
[ENA]
¡û
>W1911577011
PDKO01000009
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
97480
97566
+
Leu
TAA
[ENA]
¡û
>W1810295902
PTIW01000005
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
26750
26664
-
Leu
TAA
[ENA]
¡û
>W1810295909
PTIW01000019
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
24457
24543
+
Leu
TAA
[ENA]
¡û
>W1511517401
JXXG01000003
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
505566
505652
+
Leu
TAA
[ENA]
¡û
>W1610835328
LPNY01000021
Campylobacterota
Arcobacter sp. EP1 [LPNY]
253243
253157
-
Leu
TAA
[ENA]
¡û
>W1610835340
LPNY01000122
Campylobacterota
Arcobacter sp. EP1 [LPNY]
15405
15319
-
Leu
TAA
[ENA]
¡û
>W1710602819
FUYO01000003
Campylobacterota
Malaciobacter marinus [FUYO]
43258
43172
-
Leu
TAA
[ENA]
¡û
>W1710602832
FUYO01000016
Campylobacterota
Malaciobacter marinus [FUYO]
42290
42204
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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