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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118081 (17 seq.)
>W131173421
ARHR01000048
Actinomycetota
Streptomycetaceae bacterium CNQ766 CNQ766 [ARHR]
21720
21804
+
Leu
GAG
[ENA]
¡û
>W131173475
ARHS01000064
Actinomycetota
Streptomyces sp. CNS335 [ARHS]
46969
46885
-
Leu
GAG
[ENA]
¡û
>W131173623
ARHU01000069
Actinomycetota
Streptomyces sp. CNY243 [ARHU]
21802
21886
+
Leu
GAG
[ENA]
¡û
>W131234238
AUKP01000042
Actinomycetota
Streptomyces sp. CNQ865 [AUKP]
21166
21250
+
Leu
GAG
[ENA]
¡û
>WENV181192136
OEPS010423656
[OEPS] soil metagenome; soil
32
116
+
Leu
GAG
[ENA]
¢þ
>W141201015
AZAN01000002
Actinomycetota
Actinospica robiniae DSM 44927 [AZAN]
8430659
8430573
-
Leu
GAG
[ENA]
¡û
>W141219386
AZWZ01000045
Actinomycetota
Streptomyces sp. CNT371 [AZWZ]
43406
43322
-
Leu
GAG
[ENA]
¡û
>C181116759
CP025407
Actinomycetota
Streptomyces sp. CMB-StM0423 [CP025407]
1144640
1144556
-
Leu
GAG
-
¡û
>C191065072
CP029618
Actinomycetota
Streptomyces sp. WAC 06738 [CP029618]
7054489
7054573
+
Leu
GAG
-
¡û
>W141730176
JNID01000018
Actinomycetota
Streptomyces sp. CNQ-525 [JNID]
125423
125507
+
Leu
GAG
[ENA]
¡û
>W1810089703
PGEW01000002
Actinomycetota
Streptomyces sp. CNZ306 [PGEW]
880519
880603
+
Leu
GAG
[ENA]
¡û
>C151083185
CP011492
Actinomycetota
Streptomyces sp. CNQ-509 [CP011492]
6735918
6736002
+
Leu
GAG
[Ensembl]
¡û
>ENV09003159
ADGO01007460
Compost metagenome contig00001
143
229
+
Leu
GAG
[ENA]
¡û
>C11119729
FQ859185
Actinomycetota
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488 [FQ859185]
5308394
5308480
+
Leu
GAG
[Ensembl]
¡û
>C121008926
CP003219
Actinomycetota
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488 [CP003219]
5308288
5308374
+
Leu
GAG
-
¡û
>W1710557981
FOLM01000003
Actinomycetota
Streptomyces aidingensis [FOLM]
377741
377655
-
Leu
GAG
[ENA]
¡û
>W1710558012
FOLM01000014
Actinomycetota
Streptomyces aidingensis [FOLM]
137430
137513
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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