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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118083 (107 seq.)
>W1710805240
LJZW01000005
Gammaproteobacteria
Xylella fastidiosa [LJZW]
136312
136396
+
Leu
CAG
[ENA]
¡û
>W1710808056
LKDK01000002
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
94547
94631
+
Leu
CAG
[ENA]
¡û
>W1710809634
LKES01000008
Gammaproteobacteria
Xylella fastidiosa [LKES]
38710
38626
-
Leu
CAG
[ENA]
¡û
>W1711055765
LRVE01000045
Gammaproteobacteria
Xylella fastidiosa [LRVE]
96961
97045
+
Leu
CAG
[ENA]
¡û
>W1711055831
LRVF01000108
Gammaproteobacteria
Xylella fastidiosa [LRVF]
96955
97039
+
Leu
CAG
[ENA]
¡û
>W1711055875
LRVG01000133
Gammaproteobacteria
Xylella fastidiosa [LRVG]
97512
97596
+
Leu
CAG
[ENA]
¡û
>W1711055925
LRVH01000172
Gammaproteobacteria
Xylella fastidiosa [LRVH]
96591
96675
+
Leu
CAG
[ENA]
¡û
>W1711055952
LRVI01000021
Gammaproteobacteria
Xylella fastidiosa [LRVI]
96041
96125
+
Leu
CAG
[ENA]
¡û
>W1711055994
LRVJ01000067
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
94930
94846
-
Leu
CAG
[ENA]
¡û
>W1711078003
LSMJ01000002
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
109777
109693
-
Leu
CAG
[ENA]
¡û
>W1711134771
LUYA01000004
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYA]
95652
95736
+
Leu
CAG
[ENA]
¡û
>W1711134818
LUYB01000004
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYB]
95654
95738
+
Leu
CAG
[ENA]
¡û
>W1711134877
LUYC01000005
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYC]
96097
96181
+
Leu
CAG
[ENA]
¡û
>W1711618078
MPAZ01000007
Gammaproteobacteria
Xylella fastidiosa [MPAZ]
95349
95433
+
Leu
CAG
[ENA]
¡û
>W1712106368
NIVT01000104
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVT]
72966
73050
+
Leu
CAG
[ENA]
¡û
>C171002851
CP010051
Gammaproteobacteria
Xylella fastidiosa Fb7 [CP010051]
375259
375175
-
Leu
CAG
-
¡û
>C171063388
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
3318590
3318506
-
Leu
CAG
-
¡û
>C171113952
CP020870
Gammaproteobacteria
Xylella fastidiosa subsp. pauca De Donno [CP020870]
1855826
1855910
+
Leu
CAG
-
¡û
>W131215572
ATVD01000001
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
387591
387675
+
Leu
CAG
[ENA]
¡û
>W131221311
AUAJ01000004
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ATCC 35871 [AUAJ]
96116
96200
+
Leu
CAG
[ENA]
¡û
>W131215847
ATVI01000005
Gammaproteobacteria
Nevskia ramosa DSM 11499 [ATVI]
534720
534636
-
Leu
CAG
[ENA]
¡û
>C027173
AE003849
Gammaproteobacteria
Xylella fastidiosa 9a5c [AE003849]
1078913
1078829
-
Leu
CAG
[Ensembl]
¡û
>C027226
AE009442
Gammaproteobacteria
Xylella fastidiosa Temecula1 [AE009442]
506276
506192
-
Leu
CAG
[Ensembl]
¡û
>WENV180249035
OBEQ010164056
[OBEQ] groundwater metagenome; groundwater
1884
1968
+
Leu
CAG
[ENA]
¢þ
>w001667
AAAM03000021
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
30218
30302
+
Leu
CAG
[ENA]
¡û
>w001632
AAAM03000001
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
172860
172779
-
Leu
CAG
[ENA]
¡û
>w001619
AAAL02000008
Gammaproteobacteria
Xylella fastidiosa Dixon [AAAL]
30472
30556
+
Leu
CAG
[ENA]
¡û
>W141094267
AVCI01000045
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 = YC6267 [AVCI]
387675
387759
+
Leu
CAG
[ENA]
¡û
>W141096984
AVGA01000003
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex Griffin-1 [AVGA]
95572
95656
+
Leu
CAG
[ENA]
¡û
>WENV181227760
OFDN01040534
[OFDN] hot springs metagenome; Water
609
525
-
Leu
CAG
[ENA]
¢þ
>WENV181298514
OFHL01125549
[OFHL] soil metagenome; Clay
366
283
-
Leu
CAG
[ENA]
¢þ
>W141148600
AWYH01000031
Gammaproteobacteria
Xylella fastidiosa 32 [AWYH]
97384
97468
+
Leu
CAG
[ENA]
¡û
>W141152295
AXBS01000032
Gammaproteobacteria
Xylella fastidiosa 6c [AXBS]
62517
62601
+
Leu
CAG
[ENA]
¡û
>W141153673
AXDP01000010
Gammaproteobacteria
Xylella fastidiosa Mul-MD [AXDP]
38561
38477
-
Leu
CAG
[ENA]
¡û
>C08011571
CP000941
Gammaproteobacteria
Xylella fastidiosa M12 [CP000941]
517505
517424
-
Leu
CAG
[Ensembl]
¡û
>C08011620
CP001011
Gammaproteobacteria
Xylella fastidiosa M23 [CP001011]
506129
506048
-
Leu
CAG
[Ensembl]
¡û
>WENV183732079
PJTV01000007
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
63171
63087
-
Leu
CAG
[ENA]
¢þ
>WENV170013791
AUZZ01007081
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
688
772
+
Leu
CAG
[ENA]
¢þ
>W141401125
JDSQ01000007
Gammaproteobacteria
Xylella taiwanensis PLS229 [JDSQ]
43863
43779
-
Leu
CAG
[ENA]
¡û
>C181007967
CP009790
Gammaproteobacteria
Xylella fastidiosa U24D [CP009790]
1078914
1078830
-
Leu
CAG
-
¡û
>C181007995
CP009823
Gammaproteobacteria
Xylella fastidiosa J1a12 [CP009823]
1309454
1309538
+
Leu
CAG
-
¡û
>C181008046
CP009826
Gammaproteobacteria
Xylella fastidiosa Pr8x [CP009826]
1948982
1949066
+
Leu
CAG
-
¡û
>C181008094
CP009829
Gammaproteobacteria
Xylella fastidiosa 3124 [CP009829]
1970314
1970398
+
Leu
CAG
-
¡û
>C181008143
CP009885
Gammaproteobacteria
Xylella fastidiosa Hib4 [CP009885]
2117555
2117639
+
Leu
CAG
-
¡û
>C181011053
CP011800
Gammaproteobacteria
Xylella taiwanensis PLS235 [CP011800]
646617
646533
-
Leu
CAG
-
¡û
>C181020200
CP016608
Gammaproteobacteria
Xylella fastidiosa Salento-1 [CP016608]
1855675
1855759
+
Leu
CAG
-
¡û
>C181020249
CP016610
Gammaproteobacteria
Xylella fastidiosa Salento-2 [CP016610]
1855840
1855924
+
Leu
CAG
-
¡û
>C191078889
CP031704
Gammaproteobacteria
Solimonas sp. K1W22B-7 [CP031704]
3025445
3025529
+
Leu
CAG
-
¡û
>C191186042
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
1644360
1644276
-
Leu
CAG
-
¡û
>W141699101
JMHP01000005
Gammaproteobacteria
Xylella fastidiosa [JMHP]
95546
95630
+
Leu
CAG
[ENA]
¡û
>W141820723
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
2659312
2659228
-
Leu
CAG
[ENA]
¡û
>W141820802
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
2880751
2880835
+
Leu
CAG
[ENA]
¡û
>W141821271
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
4046127
4046043
-
Leu
CAG
[ENA]
¡û
>W1910729294
MGYJ01000035
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 [MGYJ]
21025
21109
+
Leu
CAG
[ENA]
¡û
>W1910826140
MWQO01000028
Gammaproteobacteria
Metallibacterium scheffleri DSM 24874 [MWQO]
27705
27789
+
Leu
CAG
[ENA]
¡û
>W1911162514
NPZB01000001
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
1355622
1355538
-
Leu
CAG
[ENA]
¡û
>W1911199827
NRDP01000039
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
54799
54883
+
Leu
CAG
[ENA]
¡û
>W1911581995
PHFP01000004
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8071 [PHFP]
95681
95765
+
Leu
CAG
[ENA]
¡û
>W1911582034
PHFQ01000001
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7969 [PHFQ]
406483
406567
+
Leu
CAG
[ENA]
¡û
>W1911582095
PHFR01000005
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7970 [PHFR]
38864
38780
-
Leu
CAG
[ENA]
¡û
>W1911582139
PHFS01000004
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex CFBP8078 [PHFS]
32494
32410
-
Leu
CAG
[ENA]
¡û
>W1911582178
PHFT01000001
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8082 [PHFT]
262522
262606
+
Leu
CAG
[ENA]
¡û
>W1911582235
PHFU01000004
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8351 [PHFU]
38845
38761
-
Leu
CAG
[ENA]
¡û
>W1911582279
PHFV01000005
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi CFBP8356 [PHFV]
38716
38632
-
Leu
CAG
[ENA]
¡û
>W1911710193
QPQV01000127
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ESVL [QPQV]
95689
95773
+
Leu
CAG
[ENA]
¡û
>W1911710243
QPQW01000137
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex IVIA5901 [QPQW]
95689
95773
+
Leu
CAG
[ENA]
¡û
>W1911726689
QTJS01000003
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL2055 [QTJS]
95992
96076
+
Leu
CAG
[ENA]
¡û
>W1911726736
QTJT01000002
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL1732 [QTJT]
38752
38668
-
Leu
CAG
[ENA]
¡û
>W1911752146
QWLC01000101
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa IVIA5235 [QWLC]
96086
96170
+
Leu
CAG
[ENA]
¡û
>W1810273235
PSNW01000011
Gammaproteobacteria
Solimonas fluminis HR-BB [PSNW]
94903
94987
+
Leu
CAG
[ENA]
¡û
>W1810477565
QAOX01000004
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
82232
82316
+
Leu
CAG
[ENA]
¡û
>C151011022
CP006696
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi Ann-1 [CP006696]
707871
707787
-
Leu
CAG
[Ensembl]
¡û
>C151011713
CP006740
Gammaproteobacteria
Xylella fastidiosa MUL0034 [CP006740]
306952
306868
-
Leu
CAG
[Ensembl]
¡û
>C151079460
CP011305
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS2 [CP011305]
1482047
1481963
-
Leu
CAG
-
¡û
>C151079532
CP011306
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS2R [CP011306]
1482047
1481963
-
Leu
CAG
-
¡û
>W1511305103
JPLB01000024
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
103242
103158
-
Leu
CAG
[ENA]
¡û
>W1511305257
JPLD01000204
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
22363
22279
-
Leu
CAG
[ENA]
¡û
>W1511320733
JQAP01000002
Gammaproteobacteria
Xylella fastidiosa ATCC 35879 [JQAP]
111704
111620
-
Leu
CAG
[ENA]
¡û
>C11123978
CP002165
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa GB514 [CP002165]
1626132
1626048
-
Leu
CAG
[Ensembl]
¡û
>W1511433927
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
1568955
1568871
-
Leu
CAG
[ENA]
¡û
>W1511436652
JUJW01000003
Gammaproteobacteria
Xylella fastidiosa CoDiRO [JUJW]
108900
108816
-
Leu
CAG
[ENA]
¡û
>W11158574
AFDJ01000091
Gammaproteobacteria
Xylella fastidiosa EB92.1 [AFDJ]
38747
38663
-
Leu
CAG
[ENA]
¡û
>W1610521519
JNBT01000010
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
151050
150966
-
Leu
CAG
[ENA]
¡û
>W1610586821
LDJH01000013
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
5093
5009
-
Leu
CAG
[ENA]
¡û
>W1610616776
LGRQ01000049
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
10520
10604
+
Leu
CAG
[ENA]
¡û
>W1610669097
LJZW01000005
Gammaproteobacteria
Xylella fastidiosa [LJZW]
136312
136396
+
Leu
CAG
[ENA]
¡û
>W1610672160
LKDK01000002
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
94547
94631
+
Leu
CAG
[ENA]
¡û
>W1610673740
LKES01000008
Gammaproteobacteria
Xylella fastidiosa [LKES]
38710
38626
-
Leu
CAG
[ENA]
¡û
>W1610896811
LRVE01000045
Gammaproteobacteria
Xylella fastidiosa [LRVE]
96961
97045
+
Leu
CAG
[ENA]
¡û
>W1610896877
LRVF01000108
Gammaproteobacteria
Xylella fastidiosa [LRVF]
96955
97039
+
Leu
CAG
[ENA]
¡û
>W1610896921
LRVG01000133
Gammaproteobacteria
Xylella fastidiosa [LRVG]
97512
97596
+
Leu
CAG
[ENA]
¡û
>W1610896971
LRVH01000172
Gammaproteobacteria
Xylella fastidiosa [LRVH]
96591
96675
+
Leu
CAG
[ENA]
¡û
>W1610896998
LRVI01000021
Gammaproteobacteria
Xylella fastidiosa [LRVI]
96041
96125
+
Leu
CAG
[ENA]
¡û
>W1610897040
LRVJ01000067
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
94930
94846
-
Leu
CAG
[ENA]
¡û
>W1610917019
LSMJ01000002
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
109777
109693
-
Leu
CAG
[ENA]
¡û
>W1710515291
FNBR01000006
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
164296
164212
-
Leu
CAG
[ENA]
¡û
>W1710545781
FOBU01000001
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
133274
133358
+
Leu
CAG
[ENA]
¡û
>W1710548686
FODZ01000002
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
258767
258851
+
Leu
CAG
[ENA]
¡û
>W1710555220
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
575142
575058
-
Leu
CAG
[ENA]
¡û
>W1710579670
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
19274
19190
-
Leu
CAG
[ENA]
¡û
>W1710585657
FQWN01000004
Gammaproteobacteria
Xylella fastidiosa [FQWN]
38831
38747
-
Leu
CAG
[ENA]
¡û
>W1710595299
FTLW01000001
Gammaproteobacteria
Lysobacter tolerans [FTLW]
483574
483658
+
Leu
CAG
[ENA]
¡û
>W1710603065
FUYT01000011
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
111700
111616
-
Leu
CAG
[ENA]
¡û
>W1710620804
JNBT01000010
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
151050
150966
-
Leu
CAG
[ENA]
¡û
>W1710705951
LDJH01000013
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
5093
5009
-
Leu
CAG
[ENA]
¡û
>W1710707123
LDOS01000002
Gammaproteobacteria
Metallibacterium scheffleri [LDOS]
498585
498501
-
Leu
CAG
[ENA]
¡û
>W1710742115
LGRQ01000049
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
10520
10604
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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