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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118084 (76 seq.)
>W1710811892
LKIW01000081
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
33498
33414
-
Leu
GAG
[ENA]
¡û
>W1711005522
LQNP01000023
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
22288
22372
+
Leu
GAG
[ENA]
¡û
>W1711484440
MKCR01000027
Betaproteobacteria
Chromobacterium amazonense [MKCR]
412094
412178
+
Leu
GAG
[ENA]
¡û
>W1711484495
MKCS01000001
Betaproteobacteria
Chromobacterium sphagni Feb-37 [MKCS]
2238788
2238872
+
Leu
GAG
[ENA]
¡û
>W1711484579
MKCT01000017
Betaproteobacteria
Chromobacterium sphagni 14B-1 [MKCT]
56695
56779
+
Leu
GAG
[ENA]
¡û
>W1711664346
MQZX01000117
Betaproteobacteria
Chromobacterium violaceum pseudoviolaceum [MQZX]
30912
30828
-
Leu
GAG
[ENA]
¡û
>W1711664372
MQZY01000045
Betaproteobacteria
Chromobacterium aquaticum [MQZY]
29125
29041
-
Leu
GAG
[ENA]
¡û
>W1711664404
MQZZ01000045
Betaproteobacteria
Chromobacterium subtsugae [MQZZ]
29125
29041
-
Leu
GAG
[ENA]
¡û
>W1711747372
MUKQ01000009
Betaproteobacteria
Chromobacterium violaceum [MUKQ]
57899
57983
+
Leu
GAG
[ENA]
¡û
>W1711747453
MUKR01000008
Betaproteobacteria
Chromobacterium violaceum [MUKR]
55996
56080
+
Leu
GAG
[ENA]
¡û
>W1711747506
MUKS01000001
Betaproteobacteria
Chromobacterium violaceum [MUKS]
183022
182938
-
Leu
GAG
[ENA]
¡û
>W1711747586
MUKT01000002
Betaproteobacteria
Chromobacterium haemolyticum [MUKT]
233104
233188
+
Leu
GAG
[ENA]
¡û
>W1711747664
MUKU01000007
Betaproteobacteria
Chromobacterium haemolyticum [MUKU]
90842
90758
-
Leu
GAG
[ENA]
¡û
>W1711747732
MUKV01000004
Betaproteobacteria
Chromobacterium haemolyticum [MUKV]
129658
129742
+
Leu
GAG
[ENA]
¡û
>W1711747814
MUKW01000005
Betaproteobacteria
Chromobacterium violaceum [MUKW]
44496
44580
+
Leu
GAG
[ENA]
¡û
>W1711747895
MUKX01000006
Betaproteobacteria
Chromobacterium violaceum [MUKX]
44496
44580
+
Leu
GAG
[ENA]
¡û
>W1712081953
NHOO01000006
Betaproteobacteria
Chromobacterium violaceum [NHOO]
107581
107665
+
Leu
GAG
[ENA]
¡û
>W1712110375
NJIE01000017
Betaproteobacteria
Xenophilus sp. AP218F [NJIE]
126156
126240
+
Leu
GAG
[ENA]
¡û
>C171066256
CP017707
Betaproteobacteria
Chromobacterium vaccinii 21-1 [CP017707]
3821163
3821247
+
Leu
GAG
-
¡û
>C171094935
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2863742
2863658
-
Leu
GAG
-
¡û
>W131161548
AQXU01000009
Betaproteobacteria
Leeia oryzae DSM 17879 [AQXU]
48910
48826
-
Leu
GAG
[ENA]
¡û
>W131229731
AUGZ01000020
Betaproteobacteria
Paludibacterium yongneupense DSM 18731 [AUGZ]
80915
80999
+
Leu
GAG
[ENA]
¡û
>C007276
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
975612
975696
+
Leu
GAG
[Ensembl]
¡û
>W141106126
AVPH01000157
Betaproteobacteria
Pseudogulbenkiania ferrooxidans EGD-HP2 [AVPH]
24910
24994
+
Leu
GAG
[ENA]
¡û
>W141216165
AZUR01000001
Betaproteobacteria
Pseudogulbenkiania sp. MAI-1 [AZUR]
574751
574835
+
Leu
GAG
[ENA]
¡û
>WENV170570863
FLOH01000030
[FLOH] marine metagenome; water
528640
528724
+
Leu
GAG
[ENA]
¢þ
>C181062373
CP022344
Betaproteobacteria
Chromobacterium vaccinii XC0014 [CP022344]
1839044
1839128
+
Leu
GAG
-
¡û
>C181093168
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
906454
906538
+
Leu
GAG
-
¡û
>C181117116
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
3979254
3979170
-
Leu
GAG
-
¡û
>C181179623
CP029495
Betaproteobacteria
Chromobacterium phragmitis IIBBL 112-1 [CP029495]
2556243
2556327
+
Leu
GAG
-
¡û
>C181180297
CP029554
Betaproteobacteria
Chromobacterium phragmitis IIBBL 274-1 [CP029554]
3675215
3675299
+
Leu
GAG
-
¡û
>C191083718
CP031968
Betaproteobacteria
Chromobacterium rhizoryzae JP2-74 [CP031968]
3939377
3939293
-
Leu
GAG
-
¡û
>C191198987
LR134182
Betaproteobacteria
Chromobacterium violaceum NCTC9695 [LR134182]
980225
980309
+
Leu
GAG
-
¡û
>W09125778
ACIS01000003
Betaproteobacteria
Pseudogulbenkiania ferrooxidans 2002 [ACIS]
427551
427467
-
Leu
GAG
[ENA]
¡û
>W141778940
JONK01000010
Betaproteobacteria
Chromobacterium haemolyticum DSM 19808 [JONK]
45597
45681
+
Leu
GAG
[ENA]
¡û
>W1910647291
LXRL01000020
Betaproteobacteria
Chromobacterium haemolyticum IR17 [LXRL]
45881
45965
+
Leu
GAG
[ENA]
¡û
>W1910803485
MTBD01000007
Betaproteobacteria
Chromobacterium amazonense 56AF [MTBD]
21279
21363
+
Leu
GAG
[ENA]
¡û
>W1810068120
PDZH01000083
Betaproteobacteria
Chitinimonas sp. BJB300 [PDZH]
5105
5189
+
Leu
GAG
[ENA]
¡û
>W1810184686
PKBZ01000001
Betaproteobacteria
Chromobacterium violaceum ATCC 315322 [PKBZ]
3508112
3508196
+
Leu
GAG
[ENA]
¡û
>W1810240299
PPTF01000019
Betaproteobacteria
Chromobacterium sinusclupearum MWU13-2610 [PPTF]
190046
189962
-
Leu
GAG
[ENA]
¡û
>W1810266861
PQWB01000036
Betaproteobacteria
Chromobacterium alticapitis MWU14-2602 [PQWB]
121909
121825
-
Leu
GAG
[ENA]
¡û
>W1810483068
QARW01000002
Betaproteobacteria
Chromobacterium haemolyticum NRRL B-11053 [QARW]
588697
588781
+
Leu
GAG
[ENA]
¡û
>W1810483169
QARX01000001
Betaproteobacteria
Chromobacterium sp. Panama [QARX]
3607348
3607264
-
Leu
GAG
[ENA]
¡û
>W1810659767
QJKI01000011
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
45595
45679
+
Leu
GAG
[ENA]
¡û
>W10111506
ADDK01000013
Betaproteobacteria
Azospira oryzae PS [ADDK]
65099
65183
+
Leu
GAG
[ENA]
¡û
>W1510741050
CYHA01000010
Betaproteobacteria
Gulbenkiania indica DSM 17901 [CYHA]
25409
25493
+
Leu
GAG
[ENA]
¡û
>W1511344536
JRFR01000007
Betaproteobacteria
Chromobacterium haemolyticum T124 [JRFR]
11347
11431
+
Leu
GAG
[ENA]
¡û
>W1511399976
JTGE01000028
Betaproteobacteria
Chromobacterium piscinae ND17 [JTGE]
116642
116558
-
Leu
GAG
[ENA]
¡û
>W1511481023
JWJN01000031
Betaproteobacteria
Chromobacterium subtsugae F49 [JWJN]
22281
22365
+
Leu
GAG
[ENA]
¡û
>W1511484249
JWPW01000004
Betaproteobacteria
Chromobacterium violaceum GN5 [JWPW]
205436
205520
+
Leu
GAG
[ENA]
¡û
>W1511525825
JYGI01000018
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
51176
51092
-
Leu
GAG
[ENA]
¡û
>W1511544112
JZJJ01000002
Betaproteobacteria
Chromobacterium vaccinii MWU328 [JZJJ]
131839
131755
-
Leu
GAG
[ENA]
¡û
>W1511544249
JZJL01000002
Betaproteobacteria
Chromobacterium vaccinii MWU205 [JZJL]
175488
175404
-
Leu
GAG
[ENA]
¡û
>W1511622789
LCWO01000006
Betaproteobacteria
Chromobacterium subtsugae MWU3525 [LCWO]
186101
186017
-
Leu
GAG
[ENA]
¡û
>W1511622891
LCWP01000010
Betaproteobacteria
Chromobacterium subtsugae MWU2920 [LCWP]
190831
190747
-
Leu
GAG
[ENA]
¡û
>W1511622945
LCWQ01000008
Betaproteobacteria
Chromobacterium subtsugae MWU2576 [LCWQ]
73937
74021
+
Leu
GAG
[ENA]
¡û
>W1511623019
LCWR01000007
Betaproteobacteria
Chromobacterium subtsugae MWU2387 [LCWR]
31976
32060
+
Leu
GAG
[ENA]
¡û
>W1511640561
LDUI01000011
Betaproteobacteria
Chromobacterium sp. LK1 [LDUI]
35636
35552
-
Leu
GAG
[ENA]
¡û
>W1511640878
LDUM01000012
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
7334
7418
+
Leu
GAG
[ENA]
¡û
>W1511641269
LDUR01000011
Betaproteobacteria
Chromobacterium sp. LK11 [LDUR]
13951
14035
+
Leu
GAG
[ENA]
¡û
>W1511641460
LDUT01000024
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
7335
7419
+
Leu
GAG
[ENA]
¡û
>W1511641531
LDUU01000017
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
61070
61154
+
Leu
GAG
[ENA]
¡û
>W1511641837
LDUX01000045
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
53325
53241
-
Leu
GAG
[ENA]
¡û
>W11187306
CAEE01000166
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
496
580
+
Leu
GAG
[ENA]
¡û
>C121000513
AP012224
Betaproteobacteria
Pseudogulbenkiania sp. NH8B [AP012224]
617392
617476
+
Leu
GAG
[Ensembl]
¡û
>W121126941
CAEE01000166
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
496
580
+
Leu
GAG
[ENA]
¡û
>W1610551511
JYKA01000013
Betaproteobacteria
Chromobacterium subtsugae [JYKA]
84275
84191
-
Leu
GAG
[ENA]
¡û
>W1610631903
LION01000010
Betaproteobacteria
Gulbenkiania indica [LION]
25409
25493
+
Leu
GAG
[ENA]
¡û
>W1610637969
LIVN01000002
Betaproteobacteria
Gulbenkiania mobilis [LIVN]
166003
165919
-
Leu
GAG
[ENA]
¡û
>W1610675989
LKIW01000081
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
33498
33414
-
Leu
GAG
[ENA]
¡û
>W1610856172
LQNP01000023
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
22288
22372
+
Leu
GAG
[ENA]
¡û
>W1710582035
FPKR01000011
Betaproteobacteria
Chitinimonas taiwanensis DSM 18899 [FPKR]
152806
152890
+
Leu
GAG
[ENA]
¡û
>W1710607683
FXAG01000002
Betaproteobacteria
Pseudogulbenkiania subflava DSM 22618 [FXAG]
21125
21209
+
Leu
GAG
[ENA]
¡û
>W1710661784
JYKA01000013
Betaproteobacteria
Chromobacterium subtsugae [JYKA]
84275
84191
-
Leu
GAG
[ENA]
¡û
>W1710764788
LION01000010
Betaproteobacteria
Gulbenkiania indica [LION]
25409
25493
+
Leu
GAG
[ENA]
¡û
>W1710772742
LIVN01000002
Betaproteobacteria
Gulbenkiania mobilis [LIVN]
166003
165919
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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