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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118096 (21 seq.)
>W1710806651
LKBD01000040
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
40434
40348
-
Leu
TAA
[ENA]
¡û
>W1710806658
LKBD01000122
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
3
89
+
Leu
TAA
[ENA]
¡û
>WENV182579301
OJGS01004881
[OJGS] seawater metagenome; Sea water
2325
2239
-
Leu
TAA
[ENA]
¢þ
>WENV170944221
MDTG01410377
[MDTG] marine metagenome; seawater
44626
44540
-
Leu
TAA
[ENA]
¢þ
>C181010692
CP011039
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [CP011039, CP011040]
1727817
1727731
-
Leu
TAA
-
¡û
>C181010697
CP011039
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [CP011039, CP011040]
1727118
1727032
-
Leu
TAA
-
¡û
>C181080583
CP023398
Gammaproteobacteria
Pseudoalteromonas spongiae SAO4-4 [CP023398, CP023399]
1777640
1777554
-
Leu
TAA
-
¡û
>C181080588
CP023398
Gammaproteobacteria
Pseudoalteromonas spongiae SAO4-4 [CP023398, CP023399]
1776941
1776855
-
Leu
TAA
-
¡û
>W1911618777
PPSX01000026
Gammaproteobacteria
Pseudoalteromonas phenolica S3898 [PPSX]
16493
16407
-
Leu
TAA
[ENA]
¡û
>W1911618783
PPSX01000026
Gammaproteobacteria
Pseudoalteromonas phenolica S3898 [PPSX]
15857
15771
-
Leu
TAA
[ENA]
¡û
>W1911618815
PPSX01000089
Gammaproteobacteria
Pseudoalteromonas phenolica S3898 [PPSX]
25654
25740
+
Leu
TAA
[ENA]
¡û
>W1810249375
PQCB01000016
Gammaproteobacteria
Pseudoalteromonas sp. T1lg24 [PQCB]
146843
146929
+
Leu
TAA
[ENA]
¡û
>C151061292
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
2474973
2474887
-
Leu
TAA
[Ensembl]
¡û
>C151061297
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
2474436
2474350
-
Leu
TAA
[Ensembl]
¡û
>C161052653
CP013187
Gammaproteobacteria
Pseudoalteromonas phenolica KCTC 12086 [CP013187, CP013188]
2675488
2675402
-
Leu
TAA
[Ensembl]
¡û
>C161052655
CP013187
Gammaproteobacteria
Pseudoalteromonas phenolica KCTC 12086 [CP013187, CP013188]
2675196
2675110
-
Leu
TAA
[Ensembl]
¡û
>C161052661
CP013187
Gammaproteobacteria
Pseudoalteromonas phenolica KCTC 12086 [CP013187, CP013188]
2674406
2674320
-
Leu
TAA
[Ensembl]
¡û
>W121025370
AHCE01000002
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [AHCE]
454958
455044
+
Leu
TAA
[ENA]
¡û
>W121025375
AHCE01000002
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [AHCE]
455657
455743
+
Leu
TAA
[ENA]
¡û
>W1610670425
LKBD01000040
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
40434
40348
-
Leu
TAA
[ENA]
¡û
>W1610670432
LKBD01000122
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
3
89
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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