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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118136 (25 seq.)
>W1711718122
MTHE01000013
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
48574
48658
+
Leu
CAA
[ENA]
¡û
>W1712106197
NIVP01000022
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
28944
28860
-
Leu
CAA
[ENA]
¡û
>W131218246
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
1421153
1421069
-
Leu
CAA
[ENA]
¡û
>WENV180014016
FPIC01030514
[FPIC] soil metagenome; Soil
691
607
-
Leu
CAA
[ENA]
¢þ
>WENV181402576
OFTY01005439
[OFTY] sludge metagenome; sludge
1641
1725
+
Leu
CAA
[ENA]
¢þ
>WENV183727580
PJTP01000024
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
199743
199827
+
Leu
CAA
[ENA]
¢þ
>WENV183728590
PJTQ01000161
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
86116
86032
-
Leu
CAA
[ENA]
¢þ
>WENV183730945
PJTS01002434
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
3926
3842
-
Leu
CAA
[ENA]
¢þ
>WENV183733536
PJTY01003926
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
2631
2547
-
Leu
CAA
[ENA]
¢þ
>WENV183735537
PJUB01000035
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
82316
82400
+
Leu
CAA
[ENA]
¢þ
>WENV183738934
PJUE01000486
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
21926
22010
+
Leu
CAA
[ENA]
¢þ
>WENV183740188
PJUF01000663
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
6903
6819
-
Leu
CAA
[ENA]
¢þ
>WENV170645909
JQGF01000391
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
110
194
+
Leu
CAA
[ENA]
¢þ
>WENV170645988
JQGF01003817
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
254
170
-
Leu
CAA
[ENA]
¢þ
>C191093988
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
744304
744388
+
Leu
CAA
-
¡û
>C191134458
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
1167378
1167294
-
Leu
CAA
-
¡û
>C191157394
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
2952729
2952813
+
Leu
CAA
-
¡û
>C191220432
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
2834602
2834686
+
Leu
CAA
-
¡û
>W141551906
JHOF01000001
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
77705
77789
+
Leu
CAA
[ENA]
¡û
>W1910182693
BJNC01000011
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
58850
58934
+
Leu
CAA
[ENA]
¡û
>W1910374318
FUIE01000018
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
7749
7833
+
Leu
CAA
[ENA]
¡û
>W1911760344
QWTZ01000004
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
201184
201268
+
Leu
CAA
[ENA]
¡û
>W11123414
ADUI01000052
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
2390
2474
+
Leu
CAA
[ENA]
¡û
>W1511596081
LBNT01000015
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
115119
115035
-
Leu
CAA
[ENA]
¡û
>C161089829
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
2209687
2209603
-
Leu
CAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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