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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118177 (105 seq.)
>W1710867788
LMIO01000002
Actinomycetota
Leifsonia sp. Root227 [LMIO]
378501
378419
-
Leu
TAG
[ENA]
¡û
>W1710869672
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
812479
812561
+
Leu
TAG
[ENA]
¡û
>W1710869896
LMKB01000006
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
283672
283754
+
Leu
TAG
[ENA]
¡û
>W1710871377
LMLG01000006
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
1178777
1178693
-
Leu
TAG
[ENA]
¡û
>W1710872734
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
1777495
1777579
+
Leu
TAG
[ENA]
¡û
>W1710873135
LMMO01000001
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
351506
351422
-
Leu
TAG
[ENA]
¡û
>W1710874709
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
249338
249420
+
Leu
TAG
[ENA]
¡û
>W1710875004
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
861696
861778
+
Leu
TAG
[ENA]
¡û
>W1710876068
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
287318
287402
+
Leu
TAG
[ENA]
¡û
>W1710876188
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
812526
812608
+
Leu
TAG
[ENA]
¡û
>W1710876234
LMPB01000001
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
1230913
1230829
-
Leu
TAG
[ENA]
¡û
>W1710876922
LMPQ01000012
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
274025
273943
-
Leu
TAG
[ENA]
¡û
>W1710878115
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
1776753
1776837
+
Leu
TAG
[ENA]
¡û
>W1711018545
LQXA01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
11975
11891
-
Leu
TAG
[ENA]
¡û
>W1711079591
LSOE01000003
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
262143
262227
+
Leu
TAG
[ENA]
¡û
>W1711173313
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
64485
64403
-
Leu
TAG
[ENA]
¡û
>W1711357197
MDHB01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
23856
23940
+
Leu
TAG
[ENA]
¡û
>W1711357241
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
1446482
1446398
-
Leu
TAG
[ENA]
¡û
>W1711357266
MDHD01000185
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
9982
10066
+
Leu
TAG
[ENA]
¡û
>W1711357311
MDHE01000272
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
8426
8342
-
Leu
TAG
[ENA]
¡û
>W1711357360
MDHF01000166
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
10786
10702
-
Leu
TAG
[ENA]
¡û
>W1711357404
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
3027515
3027431
-
Leu
TAG
[ENA]
¡û
>W1711357450
MDHH01000003
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
163225
163309
+
Leu
TAG
[ENA]
¡û
>W1711357498
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
1020703
1020619
-
Leu
TAG
[ENA]
¡û
>W1711357555
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
1347715
1347631
-
Leu
TAG
[ENA]
¡û
>W1711357577
MDHK01000024
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
75669
75753
+
Leu
TAG
[ENA]
¡û
>W1711357646
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
1477925
1477841
-
Leu
TAG
[ENA]
¡û
>W1711357690
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
1456727
1456643
-
Leu
TAG
[ENA]
¡û
>W1711360691
MDJW01000007
Actinomycetota
Clavibacter michiganensis [MDJW]
205373
205457
+
Leu
TAG
[ENA]
¡û
>W1711360732
MDJX01000024
Actinomycetota
Clavibacter michiganensis [MDJX]
9754
9838
+
Leu
TAG
[ENA]
¡û
>W1711360778
MDJY01000006
Actinomycetota
Clavibacter michiganensis [MDJY]
35588
35504
-
Leu
TAG
[ENA]
¡û
>W1711360848
MDJZ01000015
Actinomycetota
Clavibacter michiganensis [MDJZ]
41283
41199
-
Leu
TAG
[ENA]
¡û
>W1711461362
MJGS01000017
Actinomycetota
Frigoribacterium sp. MCBA15_019 [MJGS]
183079
183163
+
Leu
TAG
[ENA]
¡û
>W1711461536
MJGW01000017
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
295670
295752
+
Leu
TAG
[ENA]
¡û
>C171111588
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
2256512
2256596
+
Leu
TAG
-
¡û
>C006172
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
1472332
1472248
-
Leu
TAG
[Ensembl]
¡û
>WENV180018356
FSYX01000303
[FSYX] metagenome; soil
2495
2577
+
Leu
TAG
[ENA]
¢þ
>WENV180025981
FTIR01001415
[FTIR] metagenome; soil
8985
8903
-
Leu
TAG
[ENA]
¢þ
>WENV180028822
FTJH01019282
[FTJH] metagenome; soil
60
144
+
Leu
TAG
[ENA]
¢þ
>WENV181234777
OFEU01007766
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
380
462
+
Leu
TAG
[ENA]
¢þ
>W141212795
AZQZ01000045
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
767759
767843
+
Leu
TAG
[ENA]
¡û
>C08003554
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
2223849
2223933
+
Leu
TAG
[Ensembl]
¡û
>C181048886
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
1979751
1979835
+
Leu
TAG
-
¡û
>C181048953
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
1198577
1198493
-
Leu
TAG
-
¡û
>C181196615
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
2190230
2190148
-
Leu
TAG
-
¡û
>C191011729
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
903133
903050
-
Leu
TAG
-
¡û
>C191101014
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2400299
2400217
-
Leu
TAG
-
¡û
>C191182572
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3500599
3500517
-
Leu
TAG
-
¡û
>W1910374237
FUIC01000012
Actinomycetota
Gulosibacter sp. 10 [FUIC]
106416
106334
-
Leu
TAG
[ENA]
¡û
>W1910377788
FUKR01000036
Actinomycetota
Mycetocola reblochoni REB411 [FUKR]
63174
63092
-
Leu
TAG
[ENA]
¡û
>W1910839659
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
1224331
1224415
+
Leu
TAG
[ENA]
¡û
>W1910839701
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
840127
840211
+
Leu
TAG
[ENA]
¡û
>W1910839752
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
2234118
2234202
+
Leu
TAG
[ENA]
¡û
>W1910839800
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
2891725
2891809
+
Leu
TAG
[ENA]
¡û
>W1910839844
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
3035254
3035336
+
Leu
TAG
[ENA]
¡û
>W1911671558
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
793763
793845
+
Leu
TAG
[ENA]
¡û
>W1911748142
QWDZ01000027
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
8117
8033
-
Leu
TAG
[ENA]
¡û
>W1911748209
QWEA01000988
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
529
613
+
Leu
TAG
[ENA]
¡û
>W1911748224
QWEB01000038
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
5040
5124
+
Leu
TAG
[ENA]
¡û
>W1911748287
QWEC01000087
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
9416
9332
-
Leu
TAG
[ENA]
¡û
>W1911748319
QWED01000041
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
783
867
+
Leu
TAG
[ENA]
¡û
>W1911748344
QWEE01000006
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
7524
7440
-
Leu
TAG
[ENA]
¡û
>W1911749573
QWGS01000034
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
3886
3970
+
Leu
TAG
[ENA]
¡û
>W1911749626
QWGT01000067
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
11732
11648
-
Leu
TAG
[ENA]
¡û
>W1911749652
QWGU01000011
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
8108
8024
-
Leu
TAG
[ENA]
¡û
>W1911749717
QWGV01000087
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
7288
7204
-
Leu
TAG
[ENA]
¡û
>W1810168963
PJJR01000050
Actinomycetota
Cryobacterium sp. N19 [PJJR]
18998
19080
+
Leu
TAG
[ENA]
¡û
>W1810277239
PSTR01000004
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
131658
131742
+
Leu
TAG
[ENA]
¡û
>W1810277294
PSTS01000016
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
21836
21753
-
Leu
TAG
[ENA]
¡û
>W1810277415
PSTV01000014
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
85291
85207
-
Leu
TAG
[ENA]
¡û
>W1810277461
PSTW01000017
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
86461
86377
-
Leu
TAG
[ENA]
¡û
>W1810282062
PSXY01000001
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
13629
13546
-
Leu
TAG
[ENA]
¡û
>W1810860800
QTTK01000002
Actinomycetota
Clavibacter sp. 199 [QTTK]
231381
231297
-
Leu
TAG
[ENA]
¡û
>SRA1014378
SRR023845.113966
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
17
99
+
Leu
TAG
[SRA]
>C151075669
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
1127588
1127504
-
Leu
TAG
[Ensembl]
¡û
>C151095727
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
1283984
1283900
-
Leu
TAG
-
¡û
>W1511352457
JROD01000013
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
113739
113823
+
Leu
TAG
[ENA]
¡û
>W1511509382
JXQZ01000039
Actinomycetota
Frigoribacterium sp. MEB024 [JXQZ]
4665
4749
+
Leu
TAG
[ENA]
¡û
>W1511570084
LAKL01000015
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
68293
68209
-
Leu
TAG
[ENA]
¡û
>C161073148
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
1935744
1935662
-
Leu
TAG
[Ensembl]
¡û
>C131019559
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
1309688
1309604
-
Leu
TAG
[Ensembl]
¡û
>W1610620596
LHOZ01000038
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
10641
10725
+
Leu
TAG
[ENA]
¡û
>W1610730134
LMIO01000002
Actinomycetota
Leifsonia sp. Root227 [LMIO]
378501
378419
-
Leu
TAG
[ENA]
¡û
>W1610732018
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
812479
812561
+
Leu
TAG
[ENA]
¡û
>W1610732242
LMKB01000006
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
283672
283754
+
Leu
TAG
[ENA]
¡û
>W1610733723
LMLG01000006
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
1178777
1178693
-
Leu
TAG
[ENA]
¡û
>W1610735080
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
1777495
1777579
+
Leu
TAG
[ENA]
¡û
>W1610735481
LMMO01000001
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
351506
351422
-
Leu
TAG
[ENA]
¡û
>W1610737055
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
249338
249420
+
Leu
TAG
[ENA]
¡û
>W1610737350
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
861696
861778
+
Leu
TAG
[ENA]
¡û
>W1610738414
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
287318
287402
+
Leu
TAG
[ENA]
¡û
>W1610738534
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
812526
812608
+
Leu
TAG
[ENA]
¡û
>W1610738580
LMPB01000001
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
1230913
1230829
-
Leu
TAG
[ENA]
¡û
>W1610739268
LMPQ01000012
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
274025
273943
-
Leu
TAG
[ENA]
¡û
>W1610740461
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
1776753
1776837
+
Leu
TAG
[ENA]
¡û
>W1610867021
LQXA01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
11975
11891
-
Leu
TAG
[ENA]
¡û
>W1610918501
LSOE01000003
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
262143
262227
+
Leu
TAG
[ENA]
¡û
>W1610981918
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
64485
64403
-
Leu
TAG
[ENA]
¡û
>W1710546919
FOCN01000004
Actinomycetota
Cryobacterium luteum [FOCN]
175177
175095
-
Leu
TAG
[ENA]
¡û
>W1710563677
FOPW01000006
Actinomycetota
Cryobacterium levicorallinum [FOPW]
188161
188243
+
Leu
TAG
[ENA]
¡û
>W1710603968
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
1854907
1854825
-
Leu
TAG
[ENA]
¡û
>W1710604662
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
1247315
1247231
-
Leu
TAG
[ENA]
¡û
>W1710608076
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
622140
622058
-
Leu
TAG
[ENA]
¡û
>W1710609333
FXWJ01000002
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
763202
763284
+
Leu
TAG
[ENA]
¡û
>W1710748290
LHOZ01000038
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
10641
10725
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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