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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118184 (99 seq.)
>W1710862658
LMEO01000008
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
140948
140865
-
Tyr
GTA
[ENA]
¡û
>W1710862710
LMEO01000048
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
194
111
-
Tyr
GTA
[ENA]
¡û
>W1710862722
LMEO01000052
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
311909
311826
-
Tyr
GTA
[ENA]
¡û
>W1710879841
LMRY01000009
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
218093
218010
-
Tyr
GTA
[ENA]
¡û
>W1710879863
LMRY01000023
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
316626
316543
-
Tyr
GTA
[ENA]
¡û
>W1710879894
LMRY01000057
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
251
168
-
Tyr
GTA
[ENA]
¡û
>W1710880112
LMSD01000004
Bacillota
Paenibacillus sp. Soil750 [LMSD]
273597
273514
-
Tyr
GTA
[ENA]
¡û
>W1710880150
LMSD01000022
Bacillota
Paenibacillus sp. Soil750 [LMSD]
693
776
+
Tyr
GTA
[ENA]
¡û
>W1710880184
LMSD01000035
Bacillota
Paenibacillus sp. Soil750 [LMSD]
5839
5756
-
Tyr
GTA
[ENA]
¡û
>W1710880198
LMSD01000041
Bacillota
Paenibacillus sp. Soil750 [LMSD]
4545
4629
+
Tyr
GTA
[ENA]
¡û
>W1710880446
LMSJ01000002
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
3967
4050
+
Tyr
GTA
[ENA]
¡û
>W1710880470
LMSJ01000010
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
153213
153132
-
Tyr
GTA
[ENA]
¡û
>W1710880516
LMSJ01000053
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
183
266
+
Tyr
GTA
[ENA]
¡û
>W1710880793
LMSP01000013
Bacillota
Paenibacillus sp. Soil787 [LMSP]
896
980
+
Tyr
GTA
[ENA]
¡û
>W1710880824
LMSP01000031
Bacillota
Paenibacillus sp. Soil787 [LMSP]
32461
32378
-
Tyr
GTA
[ENA]
¡û
>W1710880846
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
9483
9400
-
Tyr
GTA
[ENA]
¡û
>W1711069271
LSFN01000021
Bacillota
Paenibacillus crassostreae LPB0068 [LSFN]
872
956
+
Tyr
GTA
[ENA]
¡û
>W1711252529
LYPB01000054
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
787
870
+
Tyr
GTA
[ENA]
¡û
>W1711252545
LYPB01000066
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
134
217
+
Tyr
GTA
[ENA]
¡û
>W1711252616
LYPC01000010
Bacillota
Paenibacillus pectinilyticus [LYPC]
284562
284479
-
Tyr
GTA
[ENA]
¡û
>W1711252631
LYPC01000012
Bacillota
Paenibacillus pectinilyticus [LYPC]
772
853
+
Tyr
GTA
[ENA]
¡û
>W131229652
AUGY01000146
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
9205
9122
-
Tyr
GTA
[ENA]
¡û
>W131229665
AUGY01000147
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
463
380
-
Tyr
GTA
[ENA]
¡û
>W131229676
AUGY01000165
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
8343
8260
-
Tyr
GTA
[ENA]
¡û
>W131171968
ARGP01000028
Bacillota
Paenibacillus terrigena DSM 21567 [ARGP]
1051
1135
+
Tyr
GTA
[ENA]
¡û
>W131171979
ARGP01000030
Bacillota
Paenibacillus terrigena DSM 21567 [ARGP]
140393
140309
-
Tyr
GTA
[ENA]
¡û
>W131235700
AULU01000010
Bacillota
Paenibacillus assamensis DSM 18201 [AULU]
827
911
+
Tyr
GTA
[ENA]
¡û
>W131251954
CBLK010000063
Bacillota
Paenibacillus antibioticophila GD11 [CBLK]
125282
125198
-
Tyr
GTA
[ENA]
¡û
>W1711710749
MSZX01000002
Bacillota
Paenibacillus selenitireducens [MSZX]
3860
3944
+
Tyr
GTA
[ENA]
¡û
>W1711710772
MSZX01000007
Bacillota
Paenibacillus selenitireducens [MSZX]
355729
355645
-
Tyr
GTA
[ENA]
¡û
>C171067551
CP017770
Bacillota
Paenibacillus crassostreae LPB0068 [CP017770]
3432433
3432517
+
Tyr
GTA
-
¡û
>C191123436
CP034346
Bacillota
Paenibacillus lutimineralis MBLB1234 [CP034346]
156253
156337
+
Tyr
GTA
-
¡û
>W141564700
JIAZ01000010
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
338647
338566
-
Tyr
GTA
[ENA]
¡û
>W141564752
JIAZ01000039
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
658
741
+
Tyr
GTA
[ENA]
¡û
>W1910007065
BBYF01000009
Bacillota
Paenibacillus sp. NAIST15-1 [BBYF]
229790
229706
-
Tyr
GTA
[ENA]
¡û
>W1910154518
BILU01000190
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
8860
8777
-
Tyr
GTA
[ENA]
¡û
>W1910913858
NHRJ02000002
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
53739
53658
-
Tyr
GTA
[ENA]
¡û
>W1910913871
NHRJ02000003
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
1017
1101
+
Tyr
GTA
[ENA]
¡û
>W1910913908
NHRJ02000014
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
50128
50211
+
Tyr
GTA
[ENA]
¡û
>W1910913931
NHRJ02000018
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
938
1022
+
Tyr
GTA
[ENA]
¡û
>SRA1005876
SRR014589.4759
Metagenomic analysis of viruses in reclaimed water (SRP000673)
168
249
+
Tyr
GTA
[SRA]
>SRA1005892
SRR014589.21784
Metagenomic analysis of viruses in reclaimed water (SRP000673)
121
204
+
Tyr
GTA
[SRA]
>SRA1005911
SRR014589.41297
Metagenomic analysis of viruses in reclaimed water (SRP000673)
87
170
+
Tyr
GTA
[SRA]
>SRA1005913
SRR014589.41574
Metagenomic analysis of viruses in reclaimed water (SRP000673)
40
123
+
Tyr
GTA
[SRA]
>SRA1005922
SRR014589.46528
Metagenomic analysis of viruses in reclaimed water (SRP000673)
168
251
+
Tyr
GTA
[SRA]
>SRA1005947
SRR014589.67187
Metagenomic analysis of viruses in reclaimed water (SRP000673)
208
125
-
Tyr
GTA
[SRA]
>SRA1005967
SRR014589.81102
Metagenomic analysis of viruses in reclaimed water (SRP000673)
93
176
+
Tyr
GTA
[SRA]
>SRA1005992
SRR014589.94124
Metagenomic analysis of viruses in reclaimed water (SRP000673)
132
215
+
Tyr
GTA
[SRA]
>SRA1006035
SRR014589.130010
Metagenomic analysis of viruses in reclaimed water (SRP000673)
150
233
+
Tyr
GTA
[SRA]
>SRA1006091
SRR014589.179032
Metagenomic analysis of viruses in reclaimed water (SRP000673)
214
131
-
Tyr
GTA
[SRA]
>SRA1006124
SRR014589.222739
Metagenomic analysis of viruses in reclaimed water (SRP000673)
153
236
+
Tyr
GTA
[SRA]
>SRA1006125
SRR014589.226733
Metagenomic analysis of viruses in reclaimed water (SRP000673)
141
58
-
Tyr
GTA
[SRA]
>W1810760023
QPJW01000004
Bacillota
Fontibacillus phaseoli CECT 8333 [QPJW]
1098
1182
+
Tyr
GTA
[ENA]
¡û
>W1810760041
QPJW01000006
Bacillota
Fontibacillus phaseoli CECT 8333 [QPJW]
900
984
+
Tyr
GTA
[ENA]
¡û
>W1510562758
CTEK01000027
Bacillota
Paenibacillus sp. GM2 [CTEK]
804
888
+
Tyr
GTA
[ENA]
¡û
>W1511433052
JUGY01000019
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
1021
1104
+
Tyr
GTA
[ENA]
¡û
>W1511433063
JUGY01000021
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
1109
1192
+
Tyr
GTA
[ENA]
¡û
>W1511433116
JUGY01000095
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
1443
1526
+
Tyr
GTA
[ENA]
¡û
>C121009273
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
185495
185579
+
Tyr
GTA
[Ensembl]
¡û
>C121009278
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
260485
260569
+
Tyr
GTA
[Ensembl]
¡û
>C121009359
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
1600621
1600705
+
Tyr
GTA
[Ensembl]
¡û
>C121009396
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
7668967
7668883
-
Tyr
GTA
[Ensembl]
¡û
>C121009409
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
7357103
7357019
-
Tyr
GTA
[Ensembl]
¡û
>W1610049668
BBFE01000038
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
39664
39580
-
Tyr
GTA
[ENA]
¡û
>W1610049710
BBFE01000080
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
891
975
+
Tyr
GTA
[ENA]
¡û
>W1610501418
FLKE01000004
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
84244
84328
+
Tyr
GTA
[ENA]
¡û
>W1610501458
FLKE01000013
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
48438
48354
-
Tyr
GTA
[ENA]
¡û
>W1610501480
FLKE01000015
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
267205
267121
-
Tyr
GTA
[ENA]
¡û
>W1610725004
LMEO01000008
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
140948
140865
-
Tyr
GTA
[ENA]
¡û
>W1610725056
LMEO01000048
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
194
111
-
Tyr
GTA
[ENA]
¡û
>W1610725068
LMEO01000052
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
311909
311826
-
Tyr
GTA
[ENA]
¡û
>W1610742187
LMRY01000009
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
218093
218010
-
Tyr
GTA
[ENA]
¡û
>W1610742209
LMRY01000023
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
316626
316543
-
Tyr
GTA
[ENA]
¡û
>W1610742240
LMRY01000057
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
251
168
-
Tyr
GTA
[ENA]
¡û
>W1610742458
LMSD01000004
Bacillota
Paenibacillus sp. Soil750 [LMSD]
273597
273514
-
Tyr
GTA
[ENA]
¡û
>W1610742496
LMSD01000022
Bacillota
Paenibacillus sp. Soil750 [LMSD]
693
776
+
Tyr
GTA
[ENA]
¡û
>W1610742530
LMSD01000035
Bacillota
Paenibacillus sp. Soil750 [LMSD]
5839
5756
-
Tyr
GTA
[ENA]
¡û
>W1610742544
LMSD01000041
Bacillota
Paenibacillus sp. Soil750 [LMSD]
4545
4629
+
Tyr
GTA
[ENA]
¡û
>W1610742792
LMSJ01000002
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
3967
4050
+
Tyr
GTA
[ENA]
¡û
>W1610742816
LMSJ01000010
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
153213
153132
-
Tyr
GTA
[ENA]
¡û
>W1610742862
LMSJ01000053
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
183
266
+
Tyr
GTA
[ENA]
¡û
>W1610743139
LMSP01000013
Bacillota
Paenibacillus sp. Soil787 [LMSP]
896
980
+
Tyr
GTA
[ENA]
¡û
>W1610743170
LMSP01000031
Bacillota
Paenibacillus sp. Soil787 [LMSP]
32461
32378
-
Tyr
GTA
[ENA]
¡û
>W1610743192
LMSP01000037
Bacillota
Paenibacillus sp. Soil787 [LMSP]
9483
9400
-
Tyr
GTA
[ENA]
¡û
>W1610909799
LSFN01000021
Bacillota
Paenibacillus crassostreae LPB0068 [LSFN]
872
956
+
Tyr
GTA
[ENA]
¡û
>W1611017317
LYPB01000054
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
787
870
+
Tyr
GTA
[ENA]
¡û
>W1611017333
LYPB01000066
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
134
217
+
Tyr
GTA
[ENA]
¡û
>W1611017404
LYPC01000010
Bacillota
Paenibacillus pectinilyticus [LYPC]
284562
284479
-
Tyr
GTA
[ENA]
¡û
>W1611017419
LYPC01000012
Bacillota
Paenibacillus pectinilyticus [LYPC]
772
853
+
Tyr
GTA
[ENA]
¡û
>W1710046067
BBFE01000038
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
39664
39580
-
Tyr
GTA
[ENA]
¡û
>W1710046109
BBFE01000080
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
891
975
+
Tyr
GTA
[ENA]
¡û
>W1710494888
FLKE01000004
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
84244
84328
+
Tyr
GTA
[ENA]
¡û
>W1710494928
FLKE01000013
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
48438
48354
-
Tyr
GTA
[ENA]
¡û
>W1710494950
FLKE01000015
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
267205
267121
-
Tyr
GTA
[ENA]
¡û
>W1710514824
FNBG01000006
Bacillota
Fontibacillus panacisegetis [FNBG]
172773
172689
-
Tyr
GTA
[ENA]
¡û
>W1710514864
FNBG01000041
Bacillota
Fontibacillus panacisegetis [FNBG]
34244
34160
-
Tyr
GTA
[ENA]
¡û
>W1710523728
FNIF01000020
Bacillota
Paenibacillus sp. yr247 [FNIF]
761
844
+
Tyr
GTA
[ENA]
¡û
>W1710523739
FNIF01000023
Bacillota
Paenibacillus sp. yr247 [FNIF]
73029
72946
-
Tyr
GTA
[ENA]
¡û
>W1710770336
LITP01000001
Bacillota
Bacillus sp. FJAT-18019 [LITP]
2373777
2373693
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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