This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118247 (90 seq.)
>W1710864882
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
993195
993279
+
Leu
CAA
[ENA]
¡û
>W1710912936
LNSA01000017
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
38388
38304
-
Leu
CAA
[ENA]
¡û
>W1710912976
LNSB01000034
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
53969
54053
+
Leu
CAA
[ENA]
¡û
>W1710913037
LNSC01000093
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
8267
8351
+
Leu
CAA
[ENA]
¡û
>W1710913060
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
133370
133286
-
Leu
CAA
[ENA]
¡û
>W1710913099
LNSE01000003
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
70909
70825
-
Leu
CAA
[ENA]
¡û
>W1710913145
LNSF01000003
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
133370
133286
-
Leu
CAA
[ENA]
¡û
>W1710913190
LNSG01000003
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
133370
133286
-
Leu
CAA
[ENA]
¡û
>W1710913225
LNSH01000001
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
16535
16451
-
Leu
CAA
[ENA]
¡û
>W1710913277
LNSI01000002
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
70913
70829
-
Leu
CAA
[ENA]
¡û
>W1710913311
LNSJ01000001
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
69338
69422
+
Leu
CAA
[ENA]
¡û
>W1710913396
LNSK01000013
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
6349
6265
-
Leu
CAA
[ENA]
¡û
>W1711127855
LURA01000073
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
24085
24001
-
Leu
CAA
[ENA]
¡û
>W1711127887
LURB01000022
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
17589
17505
-
Leu
CAA
[ENA]
¡û
>W1711127940
LURE01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
202290
202374
+
Leu
CAA
[ENA]
¡û
>W1711127990
LURG01000041
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
1704
1788
+
Leu
CAA
[ENA]
¡û
>W1711128033
LURH01000017
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
19525
19441
-
Leu
CAA
[ENA]
¡û
>W1711128055
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
775656
775740
+
Leu
CAA
[ENA]
¡û
>W1711259772
LYVN01000021
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
35788
35872
+
Leu
CAA
[ENA]
¡û
>W1711386429
MEFH01000177
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
3297
3213
-
Leu
CAA
[ENA]
¡û
>W1711503951
MKUC01000025
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
5473
5389
-
Leu
CAA
[ENA]
¡û
>W1711603449
MOLY01000036
Alphaproteobacteria
Sphingomonas montana W16RD [MOLY]
64760
64676
-
Leu
CAA
[ENA]
¡û
>C171094584
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
754475
754391
-
Leu
CAA
-
¡û
>C171128411
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
1495657
1495741
+
Leu
CAA
-
¡û
>W131100423
AOUN01000006
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
173444
173360
-
Leu
CAA
[ENA]
¡û
>C019719
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
791522
791606
+
Leu
CAA
[Ensembl]
¡û
>WENV180284622
OBID01071356
[OBID] metagenome; sludge
113
29
-
Leu
CAA
[ENA]
¢þ
>WENV181167642
OEIU01052980
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
927
843
-
Leu
CAA
[ENA]
¢þ
>WENV181308505
OFIS01041832
[OFIS] sludge metagenome; sludge
377
461
+
Leu
CAA
[ENA]
¢þ
>WENV181312299
OFJB01073949
[OFJB] sludge metagenome; sludge
155
71
-
Leu
CAA
[ENA]
¢þ
>WENV181384119
OFRH01019243
[OFRH] wastewater metagenome; Exp Tend NO 100WW
283
367
+
Leu
CAA
[ENA]
¢þ
>WENV181402327
OFTY01000626
[OFTY] sludge metagenome; sludge
16355
16439
+
Leu
CAA
[ENA]
¢þ
>WENV183729284
PJTQ01018084
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
686
602
-
Leu
CAA
[ENA]
¢þ
>WENV183746487
POYD01033257
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
1588
1504
-
Leu
CAA
[ENA]
¢þ
>WENV170727414
LULE01000048
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
63781
63865
+
Leu
CAA
[ENA]
¢þ
>WENV170728818
LULF01001090
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
4716
4800
+
Leu
CAA
[ENA]
¢þ
>WENV170729934
LULG01004274
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
1704
1788
+
Leu
CAA
[ENA]
¢þ
>WENV170732212
LULI01022984
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
1984
1900
-
Leu
CAA
[ENA]
¢þ
>WENV170732464
LULJ01000023
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
119686
119770
+
Leu
CAA
[ENA]
¢þ
>WENV170734686
LULK01014201
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
776
860
+
Leu
CAA
[ENA]
¢þ
>WENV170735732
LULL01009999
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
820
736
-
Leu
CAA
[ENA]
¢þ
>WENV170736287
LULM01000692
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
7839
7923
+
Leu
CAA
[ENA]
¢þ
>WENV170737470
LULO01000191
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
28864
28780
-
Leu
CAA
[ENA]
¢þ
>WENV170738334
LULP01000003
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
202290
202374
+
Leu
CAA
[ENA]
¢þ
>WENV170739684
LULQ01007691
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
1194
1110
-
Leu
CAA
[ENA]
¢þ
>WENV170741842
LULT01008286
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
521
437
-
Leu
CAA
[ENA]
¢þ
>WENV170742412
LULU01018762
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
685
769
+
Leu
CAA
[ENA]
¢þ
>WENV170742673
LULV01000108
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
17589
17505
-
Leu
CAA
[ENA]
¢þ
>WENV170743473
LULW01000145
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
24085
24001
-
Leu
CAA
[ENA]
¢þ
>WENV170759360
LUMS01015496
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
578
494
-
Leu
CAA
[ENA]
¢þ
>WENV170759506
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
775656
775740
+
Leu
CAA
[ENA]
¢þ
>WENV170761432
LUMV01000348
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
4702
4618
-
Leu
CAA
[ENA]
¢þ
>C191000583
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
1904387
1904303
-
Leu
CAA
-
¡û
>C191163795
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
1975191
1975275
+
Leu
CAA
-
¡û
>W09102954
AAIP01000007
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
41717
41633
-
Leu
CAA
[ENA]
¡û
>W1910501781
FYAT01000016
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
15025
14941
-
Leu
CAA
[ENA]
¡û
>W1910549094
FZPA01000001
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
567948
568032
+
Leu
CAA
[ENA]
¡û
>W1910744389
MIAM01000026
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
92873
92957
+
Leu
CAA
[ENA]
¡û
>W1910934264
NIWD01000011
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
120669
120753
+
Leu
CAA
[ENA]
¡û
>W1911411577
NWUR01000012
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
141532
141616
+
Leu
CAA
[ENA]
¡û
>C151051500
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
1737573
1737657
+
Leu
CAA
-
¡û
>W1510015788
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
2483828
2483744
-
Leu
CAA
[ENA]
¡û
>W1511221176
JNFC01000045
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
146471
146387
-
Leu
CAA
[ENA]
¡û
>W1511324678
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
555220
555136
-
Leu
CAA
[ENA]
¡û
>C161021380
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
1359650
1359734
+
Leu
CAA
[Ensembl]
¡û
>C161055607
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
2956556
2956640
+
Leu
CAA
[Ensembl]
¡û
>C161055679
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
2638773
2638689
-
Leu
CAA
-
¡û
>W1610077677
BCZQ01000012
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
131823
131907
+
Leu
CAA
[ENA]
¡û
>W1610727228
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
993195
993279
+
Leu
CAA
[ENA]
¡û
>W1610771295
LNSA01000017
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
38388
38304
-
Leu
CAA
[ENA]
¡û
>W1610771335
LNSB01000034
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
53969
54053
+
Leu
CAA
[ENA]
¡û
>W1610771396
LNSC01000093
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
8267
8351
+
Leu
CAA
[ENA]
¡û
>W1610771419
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
133370
133286
-
Leu
CAA
[ENA]
¡û
>W1610771458
LNSE01000003
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
70909
70825
-
Leu
CAA
[ENA]
¡û
>W1610771504
LNSF01000003
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
133370
133286
-
Leu
CAA
[ENA]
¡û
>W1610771549
LNSG01000003
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
133370
133286
-
Leu
CAA
[ENA]
¡û
>W1610771584
LNSH01000001
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
16535
16451
-
Leu
CAA
[ENA]
¡û
>W1610771636
LNSI01000002
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
70913
70829
-
Leu
CAA
[ENA]
¡û
>W1610771670
LNSJ01000001
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
69338
69422
+
Leu
CAA
[ENA]
¡û
>W1610771755
LNSK01000013
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
6349
6265
-
Leu
CAA
[ENA]
¡û
>W1610938969
LURA01000073
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
24085
24001
-
Leu
CAA
[ENA]
¡û
>W1610939001
LURB01000022
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
17589
17505
-
Leu
CAA
[ENA]
¡û
>W1610939054
LURE01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
202290
202374
+
Leu
CAA
[ENA]
¡û
>W1610939104
LURG01000041
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
1704
1788
+
Leu
CAA
[ENA]
¡û
>W1610939147
LURH01000017
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
19525
19441
-
Leu
CAA
[ENA]
¡û
>W1610939169
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
775656
775740
+
Leu
CAA
[ENA]
¡û
>W1710075315
BCZQ01000012
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
131823
131907
+
Leu
CAA
[ENA]
¡û
>W1710540065
FNWK01000005
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
29136
29052
-
Leu
CAA
[ENA]
¡û
>W1710602908
FUYP01000064
Alphaproteobacteria
Sphingopyxis flava [FUYP]
2815
2899
+
Leu
CAA
[ENA]
¡û
>W1710609449
FXWL01000003
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
141626
141710
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK