This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118257 (35 seq.)
>W131037631
AMFF01000559
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
32788
32704
-
Tyr
GTA
[ENA]
¡û
>W131038484
AMGC01000406
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
32617
32533
-
Tyr
GTA
[ENA]
¡û
>W1711138249
LVCQ01000015
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
32718
32634
-
Tyr
GTA
[ENA]
¡û
>W1711372819
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
1561269
1561185
-
Tyr
GTA
[ENA]
¡û
>C171026484
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
1433431
1433515
+
Tyr
GTA
-
¡û
>C171026540
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
1564056
1564140
+
Tyr
GTA
-
¡û
>C171026615
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
1805266
1805182
-
Tyr
GTA
-
¡û
>C171026670
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
1802375
1802291
-
Tyr
GTA
-
¡û
>C171026729
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
1668146
1668062
-
Tyr
GTA
-
¡û
>C171026785
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
1660315
1660231
-
Tyr
GTA
-
¡û
>C171026841
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
1660578
1660494
-
Tyr
GTA
-
¡û
>C171026894
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
2314225
2314141
-
Tyr
GTA
-
¡û
>C171026928
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
1067799
1067883
+
Tyr
GTA
-
¡û
>C171027003
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
2866607
2866523
-
Tyr
GTA
-
¡û
>C171027065
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1660387
1660303
-
Tyr
GTA
-
¡û
>C171027118
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
2314229
2314145
-
Tyr
GTA
-
¡û
>C171027174
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
2314228
2314144
-
Tyr
GTA
-
¡û
>C171027227
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
2867806
2867722
-
Tyr
GTA
-
¡û
>W141221193
AZYQ02000045
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
33737
33653
-
Tyr
GTA
[ENA]
¡û
>WENV182589021
OJHY01010498
[OJHY] seawater metagenome; Sea water
522
604
+
Tyr
GTA
[ENA]
¢þ
>WENV170457120
CEVA01246728
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
169
85
-
Tyr
GTA
[ENA]
¢þ
>C191116646
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
2875747
2875663
-
Tyr
GTA
-
¡û
>W1911652712
QBEV01000002
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
4131
4215
+
Tyr
GTA
[ENA]
¡û
>W1810054372
PDFD01000037
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
1355
1439
+
Tyr
GTA
[ENA]
¡û
>C151086959
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
320179
320263
+
Tyr
GTA
[Ensembl]
¡û
>C151095313
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
2866605
2866521
-
Tyr
GTA
-
¡û
>W1511336308
JRAD02000028
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
33740
33656
-
Tyr
GTA
[ENA]
¡û
>W1511337039
JRAV02000025
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
33330
33246
-
Tyr
GTA
[ENA]
¡û
>W1511346411
JRHD01000028
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
32813
32729
-
Tyr
GTA
[ENA]
¡û
>W1511346866
JRHP01000043
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
32974
32890
-
Tyr
GTA
[ENA]
¡û
>W1511657141
LELB01000034
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
34217
34133
-
Tyr
GTA
[ENA]
¡û
>C161042017
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
302213
302297
+
Tyr
GTA
[Ensembl]
¡û
>C161062488
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
2839315
2839231
-
Tyr
GTA
-
¡û
>C161063155
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
2884875
2884791
-
Tyr
GTA
-
¡û
>W1610949335
LVCQ01000015
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
32718
32634
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK