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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118273 (33 seq.)
>W1710866471
LMHM01000013
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
958883
958967
+
Leu
GAG
[ENA]
¡û
>W1711220369
LXQJ01000052
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
61167
61251
+
Leu
GAG
[ENA]
¡û
>W131215597
ATVD01000002
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
365558
365474
-
Leu
GAG
[ENA]
¡û
>W131244890
CAQP01000145
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
64075
63991
-
Leu
GAG
[ENA]
¡û
>W1711386666
MEFP01000019
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-320 [MEFP]
192032
191948
-
Leu
GAG
[ENA]
¡û
>W1711387514
MEGS01000013
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-25 [MEGS]
102033
101949
-
Leu
GAG
[ENA]
¡û
>W1711506708
MKWQ01000005
Gammaproteobacteria
Xanthomonadales bacterium 69-70 [MKWQ]
247323
247239
-
Leu
GAG
[ENA]
¡û
>W1711711493
MTAY01000018
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
28883
28967
+
Leu
GAG
[ENA]
¡û
>W131226639
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
726133
726217
+
Leu
GAG
[ENA]
¡û
>WENV180692867
OCZS010822791
[OCZS] soil metagenome; soil
180
96
-
Leu
GAG
[ENA]
¢þ
>W141094242
AVCI01000001
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 = YC6267 [AVCI]
365510
365426
-
Leu
GAG
[ENA]
¡û
>WENV182572995
OJFO01014870
[OJFO] seawater metagenome; Sea water
156
240
+
Leu
GAG
[ENA]
¢þ
>W141282825
JAJA01000013
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
36979
36895
-
Leu
GAG
[ENA]
¡û
>WENV182941866
OKVG01011610
[OKVG] human gut metagenome; human gut
1187
1103
-
Leu
GAG
[ENA]
¢þ
>WENV182943969
OKVI01001829
[OKVI] human gut metagenome; human gut
7318
7234
-
Leu
GAG
[ENA]
¢þ
>WENV183747889
PPFU01001952
[PPFU] hypolithon metagenome; Antarctic Hypolithon
15370
15286
-
Leu
GAG
[ENA]
¢þ
>WENV170010913
APMI01034805
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
282
366
+
Leu
GAG
[ENA]
¢þ
>C181001033
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
3637882
3637798
-
Leu
GAG
-
¡û
>C181081828
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
3476363
3476279
-
Leu
GAG
-
¡û
>C191181044
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
2539343
2539427
+
Leu
GAG
-
¡û
>W141713893
JMTZ01000012
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
85924
85840
-
Leu
GAG
[ENA]
¡û
>W1910729300
MGYJ01000061
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 [MGYJ]
36507
36591
+
Leu
GAG
[ENA]
¡û
>W1911770879
QXJI01000001
Gammaproteobacteria
Lysobacter tabacisoli C8-1 [QXJI]
526988
527072
+
Leu
GAG
[ENA]
¡û
>W1511595020
LBMI01000006
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
598576
598492
-
Leu
GAG
[ENA]
¡û
>C161031576
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
3467320
3467236
-
Leu
GAG
[Ensembl]
¡û
>C161031626
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
3445492
3445408
-
Leu
GAG
[Ensembl]
¡û
>C161031637
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
2399394
2399478
+
Leu
GAG
[Ensembl]
¡û
>C161052026
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
2342073
2342157
+
Leu
GAG
[Ensembl]
¡û
>C161052072
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
212333
212417
+
Leu
GAG
-
¡û
>W1610728817
LMHM01000013
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
958883
958967
+
Leu
GAG
[ENA]
¡û
>W1611004841
LXQJ01000052
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
61167
61251
+
Leu
GAG
[ENA]
¡û
>W1710529766
FNOG01000004
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
115394
115310
-
Leu
GAG
[ENA]
¡û
>W1710531729
FNPT01000009
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
68638
68722
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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