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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118277 (67 seq.)
>W1710864394
LMFV01000034
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
160676
160760
+
Leu
TAG
[ENA]
¡û
>W1710865046
LMGJ01000006
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
93722
93806
+
Leu
TAG
[ENA]
¡û
>W1710989567
LPWA01000057
Alphaproteobacteria
Mesorhizobium loti [LPWA]
25030
25114
+
Leu
TAG
[ENA]
¡û
>W1711257260
LYTM01000034
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
193981
193897
-
Leu
TAG
[ENA]
¡û
>W1711257369
LYTP01000031
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
239144
239060
-
Leu
TAG
[ENA]
¡û
>W1711353169
MDDT01000018
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
94376
94292
-
Leu
TAG
[ENA]
¡û
>W1711353213
MDDU01000006
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
99409
99493
+
Leu
TAG
[ENA]
¡û
>W1711354734
MDFL01000104
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
42033
41949
-
Leu
TAG
[ENA]
¡û
>W1711501779
MKRZ01000129
Alphaproteobacteria
Mesorhizobium sp. 61-13 [MKRZ]
9490
9574
+
Leu
TAG
[ENA]
¡û
>W1711505388
MKVL01000031
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
63760
63676
-
Leu
TAG
[ENA]
¡û
>C171037583
CP015318
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [CP015318]
4467591
4467675
+
Leu
TAG
-
¡û
>W131219411
ATYO01000008
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
200467
200383
-
Leu
TAG
[ENA]
¡û
>W131242071
CAAF010000063
Alphaproteobacteria
Mesorhizobium sp. STM 4661 [CAAF]
112933
113017
+
Leu
TAG
[ENA]
¡û
>W131250157
CAUM01000123
Alphaproteobacteria
Mesorhizobium metallidurans STM 2683 [CAUM]
58
142
+
Leu
TAG
[ENA]
¡û
>WENV180693680
OCZS011444212
[OCZS] soil metagenome; soil
228
144
-
Leu
TAG
[ENA]
¢þ
>W141073778
ASTL01000009
Alphaproteobacteria
Mesorhizobium ciceri ca181 [ASTL]
609700
609784
+
Leu
TAG
[ENA]
¡û
>WENV181308233
OFIS01001295
[OFIS] sludge metagenome; sludge
1625
1709
+
Leu
TAG
[ENA]
¢þ
>WENV181311743
OFJB01010513
[OFJB] sludge metagenome; sludge
907
991
+
Leu
TAG
[ENA]
¢þ
>WENV181401758
OFTX01005189
[OFTX] sludge metagenome; sludge
1959
2043
+
Leu
TAG
[ENA]
¢þ
>WENV181402460
OFTY01001891
[OFTY] sludge metagenome; sludge
5054
4970
-
Leu
TAG
[ENA]
¢þ
>WENV181843765
OGVU01060716
[OGVU] freshwater metagenome; freshwater
222
306
+
Leu
TAG
[ENA]
¢þ
>W141197547
AYVL01000021
Alphaproteobacteria
Mesorhizobium sp. LSJC280B00 [AYVL]
151034
151118
+
Leu
TAG
[ENA]
¡û
>W141198151
AYVY01000014
Alphaproteobacteria
Mesorhizobium sp. LSHC420B00 [AYVY]
129425
129509
+
Leu
TAG
[ENA]
¡û
>W141266734
CCMZ01000056
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
26001
26085
+
Leu
TAG
[ENA]
¡û
>W141266795
CCNA01000060
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
264616
264532
-
Leu
TAG
[ENA]
¡û
>W141266801
CCNB01000004
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
321504
321588
+
Leu
TAG
[ENA]
¡û
>W141266876
CCNC01000139
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
30912
30996
+
Leu
TAG
[ENA]
¡û
>W141266915
CCNE01000023
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
222275
222359
+
Leu
TAG
[ENA]
¡û
>WENV183726391
PJQF01182676
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
262
178
-
Leu
TAG
[ENA]
¢þ
>WENV170003114
AGTN01230111
[AGTN] bioreactor metagenome; poplar biomass
286
202
-
Leu
TAG
[ENA]
¢þ
>WENV170708397
LNAP01077943
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
647
563
-
Leu
TAG
[ENA]
¢þ
>C191125500
CP034443
Alphaproteobacteria
Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 [CP034443]
4521773
4521689
-
Leu
TAG
-
¡û
>C191125549
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
6326781
6326697
-
Leu
TAG
-
¡û
>C191125570
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
408650
408734
+
Leu
TAG
-
¡û
>C191125657
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
1151135
1151051
-
Leu
TAG
-
¡û
>C191125699
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
4816385
4816301
-
Leu
TAG
-
¡û
>C191125755
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
4519324
4519240
-
Leu
TAG
-
¡û
>C191125801
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
5982678
5982594
-
Leu
TAG
-
¡û
>C191125847
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
5834753
5834669
-
Leu
TAG
-
¡û
>W1910569017
JHUP01000076
Alphaproteobacteria
Mesorhizobium amorphae CCBAU 01583 [JHUP]
78892
78808
-
Leu
TAG
[ENA]
¡û
>W1911156059
NPKI01000017
Alphaproteobacteria
Mesorhizobium mediterraneum USDA 3392 [NPKI]
412646
412730
+
Leu
TAG
[ENA]
¡û
>W1911156123
NPKJ01000050
Alphaproteobacteria
Mesorhizobium temperatum SDW018 [NPKJ]
35612
35696
+
Leu
TAG
[ENA]
¡û
>W1911242440
NSFT01000001
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
339391
339307
-
Leu
TAG
[ENA]
¡û
>W1911242710
NSFY01000012
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
21732
21816
+
Leu
TAG
[ENA]
¡û
>W1911242763
NSFZ01000018
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
78385
78469
+
Leu
TAG
[ENA]
¡û
>W1911242801
NSGA01000008
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
188568
188484
-
Leu
TAG
[ENA]
¡û
>W1911242839
NSGB01000009
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
1956
2040
+
Leu
TAG
[ENA]
¡û
>W1911242899
NSGC01000010
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
12827
12911
+
Leu
TAG
[ENA]
¡û
>W1911242924
NSGD01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
267711
267627
-
Leu
TAG
[ENA]
¡û
>W1911242966
NSGE01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
603538
603622
+
Leu
TAG
[ENA]
¡û
>W1911243039
NSGF01000006
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
215609
215525
-
Leu
TAG
[ENA]
¡û
>W1911243064
NSGG01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
149580
149664
+
Leu
TAG
[ENA]
¡û
>W1911405043
NWQG01000212
Alphaproteobacteria
Mesorhizobium sanjuanii BSA136 [NWQG]
24136
24220
+
Leu
TAG
[ENA]
¡û
>W1911695532
QMBQ01000003
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
590404
590320
-
Leu
TAG
[ENA]
¡û
>W1911824713
QZWZ01000035
Alphaproteobacteria
Mesorhizobium waimense ICMP19557 [QZWZ]
16883
16799
-
Leu
TAG
[ENA]
¡û
>W1810390360
PXYK01000001
Alphaproteobacteria
Mesorhizobium ephedrae 6GN30 [PXYK]
92910
92994
+
Leu
TAG
[ENA]
¡û
>W1810444841
PZJX01000007
Alphaproteobacteria
Mesorhizobium helmanticense CSLC115N [PZJX]
220247
220331
+
Leu
TAG
[ENA]
¡û
>W1810698999
QMBP01000009
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
98455
98539
+
Leu
TAG
[ENA]
¡û
>W121018070
AGSN01000128
Alphaproteobacteria
Mesorhizobium amorphae CCNWGS0123 [AGSN]
204000
203916
-
Leu
TAG
[ENA]
¡û
>W1610083661
CCND01000007
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
84183
84267
+
Leu
TAG
[ENA]
¡û
>W1610726740
LMFV01000034
Alphaproteobacteria
Mesorhizobium sp. Root552 [LMFV]
160676
160760
+
Leu
TAG
[ENA]
¡û
>W1610727392
LMGJ01000006
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
93722
93806
+
Leu
TAG
[ENA]
¡û
>W1610844443
LPWA01000057
Alphaproteobacteria
Mesorhizobium loti [LPWA]
25030
25114
+
Leu
TAG
[ENA]
¡û
>W1611020236
LYTM01000034
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
193981
193897
-
Leu
TAG
[ENA]
¡û
>W1611020391
LYTP01000031
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
239144
239060
-
Leu
TAG
[ENA]
¡û
>W1710088678
CCND01000007
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
84183
84267
+
Leu
TAG
[ENA]
¡û
>W1710571251
FOVT01000008
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
48350
48434
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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