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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118297 (127 seq.)
>W1710778514
LJCZ01000087
Bacillota
Lactobacillus crispatus [LJCZ]
165
248
+
Leu
TAG
[ENA]
¡û
>W1710778575
LJDA01000215
Bacillota
Lactobacillus crispatus [LJDA]
521
438
-
Leu
TAG
[ENA]
¡û
>W1710792665
LJON01000117
Bacillota
Lactobacillus crispatus [LJON]
188
271
+
Leu
TAG
[ENA]
¡û
>W1711304380
MAKH01000002
Bacillota
Lactobacillus crispatus [MAKH]
3473
3390
-
Leu
TAG
[ENA]
¡û
>W1711305395
MAMR01000291
Bacillota
Lactobacillus crispatus [MAMR]
1972
1889
-
Leu
TAG
[ENA]
¡û
>W1711344564
MCJG01000012
Bacillota
Lactobacillus crispatus [MCJG]
896
979
+
Leu
TAG
[ENA]
¡û
>W1711372495
MDTN01000025
Bacillota
Lactobacillus jensenii [MDTN]
78430
78349
-
Leu
TAG
[ENA]
¡û
>W1711632579
MPSU01000082
Bacillota
Lactobacillus helveticus [MPSU]
250
333
+
Leu
TAG
[ENA]
¡û
>W1711744923
MUJA01000006
Bacillota
Lactobacillus gasseri [MUJA]
9055
8971
-
Leu
TAG
[ENA]
¡û
>W1711790977
MWIK01000039
Bacillota
Lactobacillus johnsonii [MWIK]
9247
9163
-
Leu
TAG
[ENA]
¡û
>W1712039812
NFJY01000024
Bacillota
Lactobacillus johnsonii [NFJY]
250
334
+
Leu
TAG
[ENA]
¡û
>W1712042826
NFLZ01000068
Bacillota
Lactobacillus gallinarum [NFLZ]
836
753
-
Leu
TAG
[ENA]
¡û
>C171048920
CP016400
Bacillota
Lactobacillus johnsonii BS15 [CP016400]
942959
942875
-
Leu
TAG
-
¡û
>C171048944
CP016400
Bacillota
Lactobacillus johnsonii BS15 [CP016400]
927049
926965
-
Leu
TAG
-
¡û
>C171118809
CP021427
Bacillota
Lactobacillus gasseri 4M13 [CP021427]
1289917
1290001
+
Leu
TAG
-
¡û
>W131194898
ASRG01000032
Bacillota
Lactobacillus paragasseri K7 [ASRG]
172
256
+
Leu
TAG
[ENA]
¡û
>WENV180044249
MAUZ01001389
[MAUZ] viral metagenome; DNA from tracheal sample collected at farm Unique, Mogri
412
329
-
Leu
TAG
[ENA]
¢þ
>W141007963
AGZF01000044
Bacillota
Lactobacillus crispatus FB049-03 [AGZF]
263
346
+
Leu
TAG
[ENA]
¡û
>WENV180130140
OATF01000053
[OATF] human gut metagenome; faeces
4199
4282
+
Leu
TAG
[ENA]
¢þ
>WENV180717294
ODGC01002206
[ODGC] human metagenome; G_DNA_Vaginal introitus
121
204
+
Leu
TAG
[ENA]
¢þ
>WENV180718752
ODGH01000071
[ODGH] human metagenome; G_DNA_Posterior fornix
223
306
+
Leu
TAG
[ENA]
¢þ
>W141087820
AUUE01000006
Bacillota
Lactobacillus gasseri 2016 [AUUE]
15721
15637
-
Leu
TAG
[ENA]
¡û
>W141087843
AUUE01000006
Bacillota
Lactobacillus gasseri 2016 [AUUE]
1550
1466
-
Leu
TAG
[ENA]
¡û
>WENV180912594
ODSK01000068
[ODSK] human metagenome; G_DNA_Posterior fornix
1369
1288
-
Leu
TAG
[ENA]
¢þ
>WENV180914419
ODSW01001002
[ODSW] human metagenome; G_DNA_Posterior fornix
223
306
+
Leu
TAG
[ENA]
¢þ
>W141094693
AVCU01000049
Bacillota
Lactobacillus jensenii MD IIE-70(2) [AVCU]
540
621
+
Leu
TAG
[ENA]
¡û
>WENV181057198
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
2507
2424
-
Leu
TAG
[ENA]
¢þ
>WENV181131365
OEGB01000224
[OEGB] human metagenome; G_DNA_Posterior fornix
169
250
+
Leu
TAG
[ENA]
¢þ
>WENV181173626
OEJK01000982
[OEJK] human metagenome; G_DNA_Posterior fornix
782
698
-
Leu
TAG
[ENA]
¢þ
>WENV181187335
OENY01002065
[OENY] human gut metagenome; human gut
1331
1415
+
Leu
TAG
[ENA]
¢þ
>WENV181259142
OFFV01023772
[OFFV] mouse gut metagenome; faeces
1133
1049
-
Leu
TAG
[ENA]
¢þ
>W141227531
BALB01000066
Bacillota
Lactobacillus gallinarum JCM 2011 [BALB]
163
246
+
Leu
TAG
[ENA]
¡û
>W141228091
BALQ01000014
Bacillota
Lactobacillus gasseri JCM 1131 [BALQ]
172
256
+
Leu
TAG
[ENA]
¡û
>W141228141
BALR01000026
Bacillota
Lactobacillus acidophilus JCM 1132 [BALR]
163
246
+
Leu
TAG
[ENA]
¡û
>W141228458
BALY01000037
Bacillota
Lactobacillus hamsteri JCM 6256 [BALY]
14092
14009
-
Leu
TAG
[ENA]
¡û
>WENV182409107
OIFG01001854
[OIFG] human gut metagenome; stool
2526
2442
-
Leu
TAG
[ENA]
¢þ
>WENV182943908
OKVI01001516
[OKVI] human gut metagenome; human gut
249
333
+
Leu
TAG
[ENA]
¢þ
>WENV183204877
OLPZ01001035
[OLPZ] human gut metagenome; faeces
223
306
+
Leu
TAG
[ENA]
¢þ
>WENV183238639
OLQZ01003045
[OLQZ] human gut metagenome; faeces
884
800
-
Leu
TAG
[ENA]
¢þ
>WENV183307239
OLTD01005843
[OLTD] human gut metagenome; faeces
921
837
-
Leu
TAG
[ENA]
¢þ
>WENV183428319
OMBN01019306
[OMBN] human gut metagenome; feces
227
311
+
Leu
TAG
[ENA]
¢þ
>C181017434
CP015496
Bacillota
Lactobacillus helveticus FAM8105 [CP015496]
448797
448880
+
Leu
TAG
-
¡û
>C181017496
CP015498
Bacillota
Lactobacillus helveticus FAM22155 [CP015498]
479793
479876
+
Leu
TAG
-
¡û
>C181181869
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1641067
1641151
+
Leu
TAG
-
¡û
>C181181893
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1656986
1657070
+
Leu
TAG
-
¡û
>C191044578
CP026503
Bacillota
Lactobacillus crispatus AB70 [CP026503]
478070
478153
+
Leu
TAG
-
¡û
>C191078705
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1612293
1612377
+
Leu
TAG
-
¡û
>C191078728
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1626734
1626818
+
Leu
TAG
-
¡û
>C191093484
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1705058
1704974
-
Leu
TAG
-
¡û
>C191093508
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1689141
1689057
-
Leu
TAG
-
¡û
>C191138819
CP035307
Bacillota
Lactobacillus helveticus IDCC3801 [CP035307]
1530204
1530121
-
Leu
TAG
-
¡û
>W09123042
ACGR01000027
Bacillota
Lactobacillus johnsonii ATCC 33200 [ACGR]
1227
1143
-
Leu
TAG
[ENA]
¡û
>W09123209
ACGU01000007
Bacillota
Lactobacillus ultunensis DSM 16047 [ACGU]
166
249
+
Leu
TAG
[ENA]
¡û
>W1910652958
LYQX01000049
Bacillota
Lactobacillus crispatus UMNLC7 [LYQX]
188
271
+
Leu
TAG
[ENA]
¡û
>W1910653231
LYRC01000027
Bacillota
Lactobacillus crispatus UMNLC12 [LYRC]
363
446
+
Leu
TAG
[ENA]
¡û
>W1910653346
LYRE01000053
Bacillota
Lactobacillus crispatus UMNLC14 [LYRE]
11886
11803
-
Leu
TAG
[ENA]
¡û
>W1910653647
LYRJ01000056
Bacillota
Lactobacillus crispatus UMNLC20 [LYRJ]
188
271
+
Leu
TAG
[ENA]
¡û
>W1910653818
LYRM01000056
Bacillota
Lactobacillus crispatus UMNLC23 [LYRM]
12049
11966
-
Leu
TAG
[ENA]
¡û
>W1910653937
LYRO01000059
Bacillota
Lactobacillus crispatus UMNLC25 [LYRO]
188
271
+
Leu
TAG
[ENA]
¡û
>W1910755341
MKXG01000400
Bacillota
Lactobacillus crispatus DISK12 [MKXG]
26452
26369
-
Leu
TAG
[ENA]
¡û
>W1910901059
NGNV01000014
Bacillota
Lactobacillus taiwanensis 609u [NGNV]
11434
11350
-
Leu
TAG
[ENA]
¡û
>W1910901592
NGOF01000013
Bacillota
Lactobacillus johnsonii 117k [NGOF]
300
384
+
Leu
TAG
[ENA]
¡û
>W1910901745
NGOI01000014
Bacillota
Lactobacillus johnsonii 117a [NGOI]
300
384
+
Leu
TAG
[ENA]
¡û
>W1910902280
NGOS01000068
Bacillota
Lactobacillus taiwanensis 107v [NGOS]
2764
2680
-
Leu
TAG
[ENA]
¡û
>W1910918447
NIBB01000057
Bacillota
Lactobacillus johnsonii UMNLJ54 [NIBB]
193
277
+
Leu
TAG
[ENA]
¡û
>W1910979102
NKKS01000038
Bacillota
Lactobacillus crispatus RL31 [NKKS]
295
378
+
Leu
TAG
[ENA]
¡û
>W1910979231
NKKU01000037
Bacillota
Lactobacillus crispatus RL29 [NKKU]
295
378
+
Leu
TAG
[ENA]
¡û
>W1910979487
NKKY01000035
Bacillota
Lactobacillus crispatus RL25 [NKKY]
295
378
+
Leu
TAG
[ENA]
¡û
>W1910979555
NKKZ01000038
Bacillota
Lactobacillus crispatus RL24 [NKKZ]
345
428
+
Leu
TAG
[ENA]
¡û
>W1910980193
NKLJ01000039
Bacillota
Lactobacillus crispatus RL11 [NKLJ]
295
378
+
Leu
TAG
[ENA]
¡û
>W1910980681
NKLR01000033
Bacillota
Lactobacillus crispatus RL02 [NKLR]
295
378
+
Leu
TAG
[ENA]
¡û
>W1911569283
PCYR01000039
Bacillota
Lactobacillus sp. UMNPBX19 [PCYR]
8966
8882
-
Leu
TAG
[ENA]
¡û
>W1911569993
PCZD01000139
Bacillota
Lactobacillus sp. UMNPBX6 [PCZD]
141
224
+
Leu
TAG
[ENA]
¡û
>W1911570105
PCZF01000143
Bacillota
Lactobacillus sp. UMNPBX4 [PCZF]
141
224
+
Leu
TAG
[ENA]
¡û
>W1911632240
PUFQ01000017
Bacillota
Lactobacillus pasteurii DSM 23907 [PUFQ]
3324
3407
+
Leu
TAG
[ENA]
¡û
>W1911702484
QOCU01000001
Bacillota
Lactobacillus bombicola BI-4G [QOCU]
332264
332181
-
Leu
TAG
[ENA]
¡û
>W1810001336
BEXH01000015
Bacillota
Lactobacillus paragasseri JCM 5343 [BEXH]
164
248
+
Leu
TAG
[ENA]
¡û
>W1810189125
PKIV01000026
Bacillota
Lactobacillus crispatus UMB0824 [PKIV]
27851
27768
-
Leu
TAG
[ENA]
¡û
>W1810190641
PKJZ01000049
Bacillota
Lactobacillus jensenii UMB0007 [PKJZ]
332
413
+
Leu
TAG
[ENA]
¡û
>W1810190692
PKKA01000048
Bacillota
Lactobacillus gasseri UMB0045 [PKKA]
2478
2394
-
Leu
TAG
[ENA]
¡û
>W1810190971
PKKF01000088
Bacillota
Lactobacillus crispatus UMB0054 [PKKF]
322
405
+
Leu
TAG
[ENA]
¡û
>W1810252703
PQGL01000045
Bacillota
Lactobacillus sp. HT06-2 [PQGL]
286
369
+
Leu
TAG
[ENA]
¡û
>W1810267986
PQWW01000032
Bacillota
Lactobacillus gasseri JG141 [PQWW]
1229
1145
-
Leu
TAG
[ENA]
¡û
>W1810473873
QAHT01000014
Bacillota
Lactobacillus acidophilus DS1_1A [QAHT]
14748
14665
-
Leu
TAG
[ENA]
¡û
>W1810665833
QJOG01000046
Bacillota
Lactobacillus helveticus FAM22157 [QJOG]
12154
12071
-
Leu
TAG
[ENA]
¡û
>W1810666252
QJON01000049
Bacillota
Lactobacillus helveticus FAM19191 [QJON]
11983
11900
-
Leu
TAG
[ENA]
¡û
>C151068718
CP010432
Bacillota
Lactobacillus acidophilus FSI4 [CP010432]
419345
419428
+
Leu
TAG
[Ensembl]
¡û
>W10103213
ACQC01000198
Bacillota
Lactobacillus crispatus MV-3A-US [ACQC]
168
251
+
Leu
TAG
[ENA]
¡û
>W10103470
ACQN01000014
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
171
252
+
Leu
TAG
[ENA]
¡û
>W10112033
ADDY01000040
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
173
257
+
Leu
TAG
[ENA]
¡û
>W10113192
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
4526
4610
+
Leu
TAG
[ENA]
¡û
>W10113220
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
11404
11320
-
Leu
TAG
[ENA]
¡û
>W10113936
ADGR01000179
Bacillota
Lactobacillus crispatus 214-1 [ADGR]
148
231
+
Leu
TAG
[ENA]
¡û
>W11103369
ACQC01000198
Bacillota
Lactobacillus crispatus MV-3A-US [ACQC]
168
251
+
Leu
TAG
[ENA]
¡û
>W11103626
ACQN01000014
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
171
252
+
Leu
TAG
[ENA]
¡û
>C11112011
CP002609
Bacillota
Lactobacillus amylovorus GRL1118 [CP002609]
418343
418426
+
Leu
TAG
[Ensembl]
¡û
>C11112939
CP002464
Bacillota
Lactobacillus johnsonii DPC 6026 [CP002464]
1664728
1664644
-
Leu
TAG
[Ensembl]
¡û
>W11115010
ADDY01000040
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
173
257
+
Leu
TAG
[ENA]
¡û
>W11116419
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
4526
4610
+
Leu
TAG
[ENA]
¡û
>W11116447
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
11404
11320
-
Leu
TAG
[ENA]
¡û
>W11117272
ADGR01000179
Bacillota
Lactobacillus crispatus 214-1 [ADGR]
148
231
+
Leu
TAG
[ENA]
¡û
>W11120111
ADML01000036
Bacillota
Lactobacillus crispatus CTV-05 [ADML]
10807
10724
-
Leu
TAG
[ENA]
¡û
>W1511437380
JUKW01000024
Bacillota
Lactobacillus gasseri 987_LJOH [JUKW]
144
228
+
Leu
TAG
[ENA]
¡û
>W1511453084
JVEV01000020
Bacillota
Lactobacillus gasseri 497_LGAS [JVEV]
148
232
+
Leu
TAG
[ENA]
¡û
>W1511454691
JVGG01000068
Bacillota
Lactobacillus gasseri 459_LHEL [JVGG]
154
238
+
Leu
TAG
[ENA]
¡û
>W1610032327
AYZN01000003
Bacillota
Lactobacillus pasteurii DSM 23907 = CRBIP 24.76 [AYZN]
60922
61005
+
Leu
TAG
[ENA]
¡û
>W1610035386
AZEL01000075
Bacillota
Lactobacillus gallinarum DSM 10532 = JCM 2011 [AZEL]
11782
11699
-
Leu
TAG
[ENA]
¡û
>W1610037844
AZGI01000073
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
225
308
+
Leu
TAG
[ENA]
¡û
>W1610039736
AZRE01000035
Bacillota
Lactobacillus jensenii IM3 [AZRE]
120
201
+
Leu
TAG
[ENA]
¡û
>W1610073137
BCVR01000011
Bacillota
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 [BCVR]
162
245
+
Leu
TAG
[ENA]
¡û
>C131007101
CP003799
Bacillota
Lactobacillus helveticus R0052 [CP003799]
460053
460136
+
Leu
TAG
[Ensembl]
¡û
>W1610502777
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
822046
821963
-
Leu
TAG
[ENA]
¡û
>W1610514737
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
795046
794963
-
Leu
TAG
[ENA]
¡û
>W1610528913
JQBQ01000123
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
246
163
-
Leu
TAG
[ENA]
¡û
>W1610642733
LJCZ01000087
Bacillota
Lactobacillus crispatus [LJCZ]
165
248
+
Leu
TAG
[ENA]
¡û
>W1610656590
LJON01000117
Bacillota
Lactobacillus crispatus [LJON]
188
271
+
Leu
TAG
[ENA]
¡û
>W1611054580
MAKH01000002
Bacillota
Lactobacillus crispatus [MAKH]
3473
3390
-
Leu
TAG
[ENA]
¡û
>W1611054862
MAMR01000291
Bacillota
Lactobacillus crispatus [MAMR]
1972
1889
-
Leu
TAG
[ENA]
¡û
>W1710032425
AZEL01000075
Bacillota
Lactobacillus gallinarum DSM 10532 = JCM 2011 [AZEL]
11782
11699
-
Leu
TAG
[ENA]
¡û
>W1710034883
AZGI01000073
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
225
308
+
Leu
TAG
[ENA]
¡û
>W1710036881
AZRE01000035
Bacillota
Lactobacillus jensenii IM3 [AZRE]
120
201
+
Leu
TAG
[ENA]
¡û
>W1710070255
BCVR01000011
Bacillota
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 [BCVR]
162
245
+
Leu
TAG
[ENA]
¡û
>W1710082758
BDHM01000002
Bacillota
Lactobacillus acidophilus [BDHM]
182
265
+
Leu
TAG
[ENA]
¡û
>W1710496176
FLLT01000006
Bacillota
Lactobacillus delbrueckii [FLLT]
822046
821963
-
Leu
TAG
[ENA]
¡û
>W1710500427
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
795046
794963
-
Leu
TAG
[ENA]
¡û
>W1710559292
FOMN01000006
Bacillota
Lactobacillus bombicola [FOMN]
513
596
+
Leu
TAG
[ENA]
¡û
>W1710630503
JQBQ01000123
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
246
163
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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