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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118312 (20 seq.)
>W1711326579
MBFM01000001
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
648474
648390
-
Leu
GAG
[ENA]
¡û
>W131050712
AMXA01000008
Betaproteobacteria
Thauera sp. 28 [AMXA]
29082
29166
+
Leu
GAG
[ENA]
¡û
>W131050742
AMXB01000001
Betaproteobacteria
Thauera sp. 27 [AMXB]
218240
218156
-
Leu
GAG
[ENA]
¡û
>W131050869
AMXD01000032
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
707
791
+
Leu
GAG
[ENA]
¡û
>W131050971
AMXF01000043
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
3881
3797
-
Leu
GAG
[ENA]
¡û
>W08007989
ABKT01000003
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
115355
115439
+
Leu
GAG
[ENA]
¡û
>WENV170560848
CZCA01000745
[CZCA] anaerobic digester metagenome; anaerobic digester
23451
23367
-
Leu
GAG
[ENA]
¢þ
>WENV170650695
JRYE01010853
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
634
718
+
Leu
GAG
[ENA]
¢þ
>WENV170652705
JRYH01016886
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1
85
+
Leu
GAG
[ENA]
¢þ
>WENV170653082
JRYI01002626
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1758
1674
-
Leu
GAG
[ENA]
¢þ
>C181081468
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
4622019
4621935
-
Leu
GAG
-
¡û
>C191019149
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
22357
22441
+
Leu
GAG
-
¡û
>C191022896
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
3176551
3176635
+
Leu
GAG
-
¡û
>C191081668
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
2418089
2418005
-
Leu
GAG
-
¡û
>C10113186
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
2778530
2778614
+
Leu
GAG
[Ensembl]
¡û
>W1511398316
JTDM01000021
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
146827
146911
+
Leu
GAG
[ENA]
¡û
>W11185949
CACR01002180
Betaproteobacteria
Thauera selenatis AX [CACR]
6171
6087
-
Leu
GAG
[ENA]
¡û
>W1610042944
BAZL01001820
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
132
216
+
Leu
GAG
[ENA]
¡û
>W1611063315
MBFM01000001
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
648474
648390
-
Leu
GAG
[ENA]
¡û
>W1710040104
BAZL01001820
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
132
216
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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