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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118316 (32 seq.)
>W1710869535
LMJU01000017
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
629158
629242
+
Leu
CAA
[ENA]
¡û
>W1711385479
MEEG01000142
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
6704
6788
+
Leu
CAA
[ENA]
¡û
>W131218128
ATXK01000002
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
556730
556646
-
Leu
CAA
[ENA]
¡û
>C171049974
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
4838265
4838349
+
Leu
CAA
-
¡û
>w018773
AATP01000005
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
46328
46412
+
Leu
CAA
[ENA]
¡û
>w015779
AAPJ01000005
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
261459
261543
+
Leu
CAA
[ENA]
¡û
>WENV180032024
FTJU01010181
[FTJU] metagenome; soil
791
707
-
Leu
CAA
[ENA]
¢þ
>WENV181166650
OEIU01000988
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
12432
12516
+
Leu
CAA
[ENA]
¢þ
>WENV183726162
PJQF01097818
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
182
98
-
Leu
CAA
[ENA]
¢þ
>WENV170269049
CERH01030024
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
209
125
-
Leu
CAA
[ENA]
¢þ
>WENV170672359
LAZR01000078
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
97943
97859
-
Leu
CAA
[ENA]
¢þ
>WENV170680889
LFEF01030368
[LFEF] freshwater metagenome; waterbloom
935
851
-
Leu
CAA
[ENA]
¢þ
>WENV170962820
MRWF01027781
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
405
489
+
Leu
CAA
[ENA]
¢þ
>WENV170962967
MRWF01031727
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
5656
5740
+
Leu
CAA
[ENA]
¢þ
>WENV170964502
MRWG01015255
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1691
1607
-
Leu
CAA
[ENA]
¢þ
>WENV170964503
MRWG01015280
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1689
1605
-
Leu
CAA
[ENA]
¢þ
>C191005683
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
3943876
3943792
-
Leu
CAA
-
¡û
>W1910635419
LNCQ01000036
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
116530
116446
-
Leu
CAA
[ENA]
¡û
>W1810394339
PYBP01000017
Alphaproteobacteria
Nitratireductor sp. StC3 [PYBP]
9421
9505
+
Leu
CAA
[ENA]
¡û
>W1810889066
QURL01000003
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
56758
56842
+
Leu
CAA
[ENA]
¡û
>W1510081389
CDSD01000219
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
31758
31674
-
Leu
CAA
[ENA]
¡û
>C161001669
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
1014666
1014582
-
Leu
CAA
[Ensembl]
¡û
>C161047995
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
279894
279978
+
Leu
CAA
-
¡û
>C161108086
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
3402965
3403049
+
Leu
CAA
[Ensembl]
¡û
>W1610056750
BBWN01000004
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
103996
103912
-
Leu
CAA
[ENA]
¡û
>W1610056844
BBWP01000009
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
3208
3292
+
Leu
CAA
[ENA]
¡û
>W1610912610
LSIK01000215
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
1637
1721
+
Leu
CAA
[ENA]
¡û
>W1611061610
MAYB01000008
Alphaproteobacteria
Nitratireductor aquibiodomus [MAYB]
218112
218028
-
Leu
CAA
[ENA]
¡û
>WENV081102
ABEF01028230
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
1030
946
-
Leu
CAA
[ENA]
>W1710053449
BBWN01000004
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
103996
103912
-
Leu
CAA
[ENA]
¡û
>W1710053543
BBWP01000009
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
3208
3292
+
Leu
CAA
[ENA]
¡û
>W1710606290
FWXR01000014
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
21436
21520
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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