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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118332 (51 seq.)
>W1710881414
LMTB01000001
Actinomycetota
Dietzia timorensis [LMTB]
19297
19213
-
Leu
TAG
[ENA]
¡û
>W1711081653
LSSV01000093
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
134269
134187
-
Leu
TAG
[ENA]
¡û
>W1711082321
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
69963
70045
+
Leu
TAG
[ENA]
¡û
>W1711139715
LVFF01000004
Actinomycetota
Dietzia maris [LVFF]
23526
23608
+
Leu
TAG
[ENA]
¡û
>W1711187606
LWPP01000451
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
10860
10778
-
Leu
TAG
[ENA]
¡û
>W1711351236
MDCG01000321
Actinomycetota
Dietzia alimentaria [MDCG]
10443
10525
+
Leu
TAG
[ENA]
¡û
>C171044545
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
1219635
1219719
+
Leu
TAG
-
¡û
>W131099101
AOSR01000014
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
22612
22528
-
Leu
TAG
[ENA]
¡û
>W131159248
AQUX01000001
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
47255
47339
+
Leu
TAG
[ENA]
¡û
>W131219768
ATYV01000004
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
16791
16707
-
Leu
TAG
[ENA]
¡û
>WENV181169914
OEIV010014626
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1273
1356
+
Leu
TAG
[ENA]
¢þ
>WENV181212254
OFBN01001511
[OFBN] metagenome; hydrothermal vent
798
880
+
Leu
TAG
[ENA]
¢þ
>WENV181212334
OFBO01001318
[OFBO] metagenome; hydrothermal vent
152
70
-
Leu
TAG
[ENA]
¢þ
>WENV181212492
OFBQ01001560
[OFBQ] metagenome; hydrothermal vent
118
36
-
Leu
TAG
[ENA]
¢þ
>WENV181212567
OFBR01001446
[OFBR] metagenome; hydrothermal vent
798
880
+
Leu
TAG
[ENA]
¢þ
>WENV181212642
OFBS01001526
[OFBS] metagenome; hydrothermal vent
118
36
-
Leu
TAG
[ENA]
¢þ
>WENV181212729
OFBT01001492
[OFBT] metagenome; hydrothermal vent
798
880
+
Leu
TAG
[ENA]
¢þ
>W141243547
CAJP01000007
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
36360
36278
-
Leu
TAG
[ENA]
¡û
>WENV170687732
LFRM01208017
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
109
25
-
Leu
TAG
[ENA]
¢þ
>C181017342
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
1201662
1201744
+
Leu
TAG
-
¡û
>C181017390
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
1147990
1148072
+
Leu
TAG
-
¡û
>C181107044
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
1108846
1108929
+
Leu
TAG
-
¡û
>C181143902
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
1850500
1850418
-
Leu
TAG
-
¡û
>C181148318
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
2376506
2376588
+
Leu
TAG
-
¡û
>W1911179008
NQMQ01000002
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
32900
32982
+
Leu
TAG
[ENA]
¡û
>W1911243328
NSGK01000003
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
259783
259701
-
Leu
TAG
[ENA]
¡û
>W1911243384
NSGL01000002
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
52483
52565
+
Leu
TAG
[ENA]
¡û
>W1911243425
NSGM01000001
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
556805
556723
-
Leu
TAG
[ENA]
¡û
>W1911243486
NSGN01000004
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
172497
172415
-
Leu
TAG
[ENA]
¡û
>W1911243534
NSGO01000004
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
26232
26314
+
Leu
TAG
[ENA]
¡û
>W1911243617
NSGP01000022
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
25618
25700
+
Leu
TAG
[ENA]
¡û
>W1911279022
NTGA01000025
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
72942
73025
+
Leu
TAG
[ENA]
¡û
>W1911422559
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
1241291
1241208
-
Leu
TAG
[ENA]
¡û
>W1911551225
OVSI01000009
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
124555
124637
+
Leu
TAG
[ENA]
¡û
>W1810463958
PZZY01000006
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
26323
26241
-
Leu
TAG
[ENA]
¡û
>W1810568909
QEEY01000010
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
34161
34243
+
Leu
TAG
[ENA]
¡û
>W1810580872
QETM01000036
Actinomycetota
Dietzia maris AMT [QETM]
10473
10391
-
Leu
TAG
[ENA]
¡û
>W1810722001
QNTT01000015
Actinomycetota
Dietzia maris SST1 [QNTT]
11854
11936
+
Leu
TAG
[ENA]
¡û
>C151012250
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
2186182
2186098
-
Leu
TAG
[Ensembl]
¡û
>W11139523
AEKG01000196
Actinomycetota
Dietzia cinnamea P4 [AEKG]
1017
1099
+
Leu
TAG
[ENA]
¡û
>W11178785
AGFF01000024
Actinomycetota
Dietzia alimentaria 72 [AGFF]
53992
53908
-
Leu
TAG
[ENA]
¡û
>W1610069410
BCSL01000031
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
23158
23240
+
Leu
TAG
[ENA]
¡û
>W1610069923
BCSW01000044
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
23140
23222
+
Leu
TAG
[ENA]
¡û
>W1610436799
FJVG01000016
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
137791
137707
-
Leu
TAG
[ENA]
¡û
>W1610743760
LMTB01000001
Actinomycetota
Dietzia timorensis [LMTB]
19297
19213
-
Leu
TAG
[ENA]
¡û
>W1610920488
LSSV01000093
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
134269
134187
-
Leu
TAG
[ENA]
¡û
>W1610921106
LSTT01000386
Actinomycetota
Dietzia cinnamea [LSTT]
69963
70045
+
Leu
TAG
[ENA]
¡û
>W1610950723
LVFF01000004
Actinomycetota
Dietzia maris [LVFF]
23526
23608
+
Leu
TAG
[ENA]
¡û
>W1710066783
BCSL01000031
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
23158
23240
+
Leu
TAG
[ENA]
¡û
>W1710067296
BCSW01000044
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
23140
23222
+
Leu
TAG
[ENA]
¡û
>W1710436535
FJVG01000016
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
137791
137707
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK