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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118396 (86 seq.)
>W1710787534
LJJR01000014
Deinococcota
Thermus scotoductus [LJJR]
55789
55873
+
Leu
TAG
[ENA]
¡û
>C171047213
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1963732
1963816
+
Leu
TAG
-
¡û
>W131155625
AQOS01000043
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
8542
8458
-
Leu
TAG
[ENA]
¡û
>W131160718
AQWU01000050
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
10259
10175
-
Leu
TAG
[ENA]
¡û
>W131167521
ARDI01000010
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
111078
111162
+
Leu
TAG
[ENA]
¡û
>W131177923
ARLD01000088
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
7948
8032
+
Leu
TAG
[ENA]
¡û
>W131218089
ATXJ01000003
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
111848
111932
+
Leu
TAG
[ENA]
¡û
>W131231938
AUIW01000001
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
224515
224431
-
Leu
TAG
[ENA]
¡û
>C025874
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
236870
236954
+
Leu
TAG
[Ensembl]
¡û
>C025928
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
582887
582971
+
Leu
TAG
[Ensembl]
¡û
>WENV180013578
FMSI01105825
[FMSI] soil metagenome; Soil
1
85
+
Leu
TAG
[ENA]
¢þ
>WENV180014191
FPIC01088815
[FPIC] soil metagenome; Soil
1
85
+
Leu
TAG
[ENA]
¢þ
>WENV180014680
FQKF010093351
[FQKF] soil metagenome; Soil
2
86
+
Leu
TAG
[ENA]
¢þ
>WENV180037074
FVAA010581874
[FVAA] soil metagenome; Soil
1
83
+
Leu
TAG
[ENA]
¢þ
>W141080524
ATNI01000077
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
30424
30340
-
Leu
TAG
[ENA]
¡û
>WENV181227933
OFDN01081127
[OFDN] hot springs metagenome; Water
576
492
-
Leu
TAG
[ENA]
¢þ
>WENV181285594
OFGS01003756
[OFGS] hot springs metagenome; Water and soil
481
565
+
Leu
TAG
[ENA]
¢þ
>WENV181404647
OGCB01000015
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
3968
4052
+
Leu
TAG
[ENA]
¢þ
>WENV181405419
OGCE01000080
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
20935
21019
+
Leu
TAG
[ENA]
¢þ
>WENV181407991
OGCH01000341
[OGCH] hot springs metagenome; hot springs
3644
3560
-
Leu
TAG
[ENA]
¢þ
>W08011596
ABVK01000006
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
130703
130787
+
Leu
TAG
[ENA]
¡û
>C181003594
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
666784
666700
-
Leu
TAG
-
¡û
>C191159693
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
744055
743971
-
Leu
TAG
-
¡û
>C191190030
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1049897
1049813
-
Leu
TAG
-
¡û
>W141818274
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
719085
719001
-
Leu
TAG
[ENA]
¡û
>W141818290
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1508017
1508101
+
Leu
TAG
[ENA]
¡û
>W141820374
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1147365
1147281
-
Leu
TAG
[ENA]
¡û
>W141820772
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
793077
792993
-
Leu
TAG
[ENA]
¡û
>W1911578811
PELL01000369
Deinococcota
Thermus scotoductus 39_S39 [PELL]
27952
28036
+
Leu
TAG
[ENA]
¡û
>W1911578840
PELM01000111
Deinococcota
Thermus scotoductus 38_S38 [PELM]
28551
28467
-
Leu
TAG
[ENA]
¡û
>W1911578903
PELN01000333
Deinococcota
Thermus scotoductus 37_S37 [PELN]
12744
12828
+
Leu
TAG
[ENA]
¡û
>W1911578963
PELO01000329
Deinococcota
Thermus scotoductus 35_S35 [PELO]
8545
8461
-
Leu
TAG
[ENA]
¡û
>W1911579009
PELP01000548
Deinococcota
Thermus scotoductus 34_S34 [PELP]
10935
10851
-
Leu
TAG
[ENA]
¡û
>W1911579026
PELQ01000044
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
19152
19236
+
Leu
TAG
[ENA]
¡û
>W1911579078
PELR01000066
Deinococcota
Thermus scotoductus 32_S32 [PELR]
12744
12828
+
Leu
TAG
[ENA]
¡û
>W1911579121
PELS01000077
Deinococcota
Thermus scotoductus 31_S31 [PELS]
10898
10814
-
Leu
TAG
[ENA]
¡û
>W1911579183
PELT01000077
Deinococcota
Thermus scotoductus 30_S30 [PELT]
10925
10841
-
Leu
TAG
[ENA]
¡û
>W1911579255
PELU01000461
Deinococcota
Thermus scotoductus 29_S29 [PELU]
12744
12828
+
Leu
TAG
[ENA]
¡û
>W1911579264
PELV01000033
Deinococcota
Thermus scotoductus 28_S28 [PELV]
10856
10772
-
Leu
TAG
[ENA]
¡û
>W1911579331
PELW01000222
Deinococcota
Thermus scotoductus 27_S27 [PELW]
28537
28453
-
Leu
TAG
[ENA]
¡û
>W1911579372
PELX01000088
Deinococcota
Thermus scotoductus 26_S26 [PELX]
8939
8855
-
Leu
TAG
[ENA]
¡û
>W1911579426
PELY01000088
Deinococcota
Thermus scotoductus 25_S25 [PELY]
10925
11009
+
Leu
TAG
[ENA]
¡û
>W1911579469
PELZ01000111
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
24854
24938
+
Leu
TAG
[ENA]
¡û
>W1911579501
PEMA01000055
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
10935
10851
-
Leu
TAG
[ENA]
¡û
>W1911579584
PEMB01000356
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
11070
10986
-
Leu
TAG
[ENA]
¡û
>W1911579631
PEMC01000335
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
14154
14238
+
Leu
TAG
[ENA]
¡û
>W1911579656
PEMD01000088
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
16475
16559
+
Leu
TAG
[ENA]
¡û
>W1911579702
PEME01000122
Deinococcota
Thermus scotoductus 19_S19 [PEME]
14146
14230
+
Leu
TAG
[ENA]
¡û
>W1911579750
PEMF01000111
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
11024
10940
-
Leu
TAG
[ENA]
¡û
>W1911579793
PEMG01000055
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
11118
11034
-
Leu
TAG
[ENA]
¡û
>W1911579859
PEMH01000266
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
4294
4378
+
Leu
TAG
[ENA]
¡û
>W1911579919
PEMI01000417
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
16989
16905
-
Leu
TAG
[ENA]
¡û
>W1911579952
PEMJ01000222
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
29247
29163
-
Leu
TAG
[ENA]
¡û
>W1911579984
PEMK01000088
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
14183
14267
+
Leu
TAG
[ENA]
¡û
>W1911580065
PEML01000339
Deinococcota
Thermus scotoductus 12_S12 [PEML]
20112
20196
+
Leu
TAG
[ENA]
¡û
>W1911580088
PEMM01000144
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
14156
14240
+
Leu
TAG
[ENA]
¡û
>W1911580143
PEMN01000222
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
39700
39784
+
Leu
TAG
[ENA]
¡û
>W1911580191
PEMO01000266
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
8781
8697
-
Leu
TAG
[ENA]
¡û
>W1911580213
PEMP01000011
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
17420
17336
-
Leu
TAG
[ENA]
¡û
>W1911580307
PEMQ01000314
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
8785
8701
-
Leu
TAG
[ENA]
¡û
>W1911580327
PEMR01000055
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
20084
20168
+
Leu
TAG
[ENA]
¡û
>W1911580388
PEMS01000390
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
10922
10838
-
Leu
TAG
[ENA]
¡û
>W1911580440
PEMT01000321
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
11020
10936
-
Leu
TAG
[ENA]
¡û
>W1911580489
PEMU01000293
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
20084
20168
+
Leu
TAG
[ENA]
¡û
>W1911580507
PEMV01000044
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
8538
8454
-
Leu
TAG
[ENA]
¡û
>W1911580548
PEMW01000011
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
8493
8577
+
Leu
TAG
[ENA]
¡û
>W1810268434
PRDA01000015
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
558
642
+
Leu
TAG
[ENA]
¡û
>W1810605099
QGMX01000005
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
18362
18446
+
Leu
TAG
[ENA]
¡û
>W1810889186
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
419220
419136
-
Leu
TAG
[ENA]
¡û
>ENV09004173
ADKJ01000838
Hot springs metagenome ctg_1106445192081
775
691
-
Leu
TAG
[ENA]
¡û
>W1511312788
JPSL02000039
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
189768
189852
+
Leu
TAG
[ENA]
¡û
>W1511401689
JTJB01000010
Deinococcota
Thermus sp. 2.9 [JTJB]
93585
93669
+
Leu
TAG
[ENA]
¡û
>C11123072
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1355588
1355504
-
Leu
TAG
[Ensembl]
¡û
>C11123181
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
589295
589379
+
Leu
TAG
[Ensembl]
¡û
>C121006397
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1051690
1051774
+
Leu
TAG
[Ensembl]
¡û
>C121009750
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1351252
1351168
-
Leu
TAG
[Ensembl]
¡û
>C161028703
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1024342
1024258
-
Leu
TAG
-
¡û
>C161067107
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1387316
1387232
-
Leu
TAG
[Ensembl]
¡û
>W121056030
AIJQ01000004
Deinococcota
Thermus parvatiensis RL [AIJQ]
169160
169244
+
Leu
TAG
[ENA]
¡û
>W1610045316
BBBL01000080
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2648
2732
+
Leu
TAG
[ENA]
¡û
>W1610045389
BBBN01000002
Deinococcota
Thermus sp. JCM 17653 [BBBN]
10491
10575
+
Leu
TAG
[ENA]
¡û
>C131002423
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
1295631
1295547
-
Leu
TAG
[Ensembl]
¡û
>W1610651389
LJJR01000014
Deinococcota
Thermus scotoductus [LJJR]
55789
55873
+
Leu
TAG
[ENA]
¡û
>W1710042157
BBBL01000080
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
2648
2732
+
Leu
TAG
[ENA]
¡û
>W1710042230
BBBN01000002
Deinococcota
Thermus sp. JCM 17653 [BBBN]
10491
10575
+
Leu
TAG
[ENA]
¡û
>W1710514654
FNBC01000018
Deinococcota
Thermus arciformis [FNBC]
37572
37488
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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